Wall clock time and date at job start Sun Mar 7 2021 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47274 * 2 1 4 4 C 1.50698 * 109.47081 * 120.00207 * 2 1 3 5 5 C 1.38355 * 120.34791 * 65.26345 * 4 2 1 6 6 C 1.40026 * 118.28738 * 180.26162 * 5 4 2 7 7 C 1.47842 * 120.56007 * 179.73380 * 6 5 4 8 8 O 1.21557 * 119.99885 * 359.71714 * 7 6 5 9 9 N 1.34774 * 119.99878 * 179.72131 * 7 6 5 10 10 C 1.46506 * 119.99903 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84540 * 23.80460 * 10 9 7 12 12 C 1.53776 * 113.61307 * 154.99797 * 10 9 7 13 13 C 1.53779 * 87.07861 * 89.11850 * 12 10 9 14 14 H 1.09002 * 113.61384 * 270.79213 * 13 12 10 15 15 C 1.53003 * 113.61497 * 139.98097 * 13 12 10 16 16 O 1.42899 * 109.47433 * 176.52667 * 15 13 12 17 17 C 1.35893 * 117.00392 * 179.97438 * 16 15 13 18 18 C 1.38736 * 120.05957 * 180.02562 * 17 16 15 19 19 C 1.38138 * 119.94337 * 180.30421 * 18 17 16 20 20 C 1.38271 * 120.05803 * 359.41293 * 19 18 17 21 21 C 1.38259 * 120.10889 * 0.60974 * 20 19 18 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 20 19 23 23 C 1.53774 * 87.17396 * 25.38876 * 13 12 10 24 24 C 1.39517 * 118.87987 * 359.45420 * 6 5 4 25 25 N 1.31691 * 120.56703 * 0.29984 * 24 6 5 26 26 C 1.31927 * 121.88324 * 359.97438 * 25 24 6 27 27 H 0.96702 * 113.99709 * 299.99640 * 1 2 3 28 28 H 1.08996 * 109.46635 * 240.00350 * 2 1 3 29 29 H 1.48494 * 110.00061 * 178.68465 * 3 2 1 30 30 H 1.48498 * 109.99825 * 300.00715 * 3 2 1 31 31 H 1.07998 * 120.85743 * 359.97438 * 5 4 2 32 32 H 0.96997 * 120.00122 * 359.97438 * 9 7 6 33 33 H 1.08999 * 113.62096 * 334.57055 * 12 10 9 34 34 H 1.09005 * 113.61222 * 203.66504 * 12 10 9 35 35 H 1.09002 * 109.47184 * 56.52921 * 15 13 12 36 36 H 1.09001 * 109.46987 * 296.52627 * 15 13 12 37 37 H 1.08002 * 120.02291 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96766 * 179.69880 * 19 18 17 39 39 H 1.08001 * 119.94323 * 180.30282 * 20 19 18 40 40 H 1.08006 * 119.97147 * 179.69573 * 21 20 19 41 41 H 1.07993 * 120.03340 * 180.02562 * 22 21 20 42 42 H 1.09005 * 113.61535 * 89.15936 * 23 13 12 43 43 H 1.09000 * 113.61685 * 220.05849 * 23 13 12 44 44 H 1.08006 * 119.71933 * 180.27544 * 24 6 5 45 45 H 1.07994 * 119.45776 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6933 -2.0624 1.4032 6 6 2.1748 -2.6778 2.5651 7 6 1.9439 -4.1184 2.8036 8 8 1.3270 -4.7780 1.9899 9 7 2.4172 -4.7004 3.9233 10 6 2.1879 -6.1280 4.1599 11 1 2.0122 -6.6865 3.2405 12 6 3.2334 -6.7750 5.0835 13 6 2.3242 -6.3796 6.2591 14 1 2.5331 -5.3870 6.6580 15 6 2.2307 -7.4500 7.3484 16 8 1.4338 -6.9613 8.4292 17 6 1.2495 -7.7953 9.4862 18 6 0.4862 -7.3856 10.5699 19 6 0.3056 -8.2329 11.6458 20 6 0.8747 -9.4930 11.6381 21 6 1.6362 -9.9036 10.5596 22 6 1.8247 -9.0578 9.4837 23 6 1.1524 -6.4096 5.2638 24 6 2.8812 -1.9097 3.4912 25 7 3.0866 -0.6264 3.2791 26 6 2.6402 -0.0188 2.1965 27 1 -0.3933 0.4417 0.7651 28 1 1.7922 -0.5138 -0.8900 29 1 3.5346 1.7702 0.0320 30 1 1.5614 2.4679 -1.2084 31 1 1.1461 -2.6275 0.6631 32 1 2.9096 -4.1742 4.5725 33 1 4.1945 -6.2609 5.0828 34 1 3.3284 -7.8524 4.9482 35 1 3.2306 -7.6864 7.7123 36 1 1.7720 -8.3487 6.9362 37 1 0.0373 -6.4032 10.5741 38 1 -0.2845 -7.9125 12.4917 39 1 0.7283 -10.1558 12.4781 40 1 2.0838 -10.8865 10.5581 41 1 2.4192 -9.3791 8.6413 42 1 0.6774 -7.3870 5.1778 43 1 0.4360 -5.6010 5.4083 44 1 3.2625 -2.3716 4.3900 45 1 2.8315 1.0355 2.0621 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534226_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:59 Heat of formation + Delta-G solvation = -7.624592 kcal Electronic energy + Delta-G solvation = -27716.300785 eV Core-core repulsion = 23666.765062 eV Total energy + Delta-G solvation = -4049.535723 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.05548 -41.33730 -40.71029 -39.37977 -38.09838 -37.99432 -34.83687 -33.80568 -32.98848 -31.99165 -31.03123 -29.21144 -27.36083 -26.92118 -26.08913 -24.38314 -23.90667 -23.34294 -22.60103 -21.91881 -20.48352 -19.37036 -19.15245 -18.21650 -17.96176 -17.73844 -17.35027 -16.95913 -16.81035 -16.66651 -16.52082 -16.17963 -15.84103 -15.62824 -15.38475 -15.10796 -14.76859 -14.67377 -14.40446 -14.35418 -14.24322 -14.06899 -13.72217 -13.59546 -13.51522 -13.19617 -12.78428 -12.53350 -12.23830 -12.17590 -12.12152 -11.81484 -11.69749 -11.39561 -11.33087 -11.08328 -10.65440 -10.60908 -10.41016 -10.19271 -9.94418 -9.14503 -5.17866 -0.62775 -0.06669 0.40007 0.51792 1.09955 1.49879 1.65592 1.80904 1.88641 2.12495 2.58119 2.86345 2.96450 3.24282 3.27150 3.34090 3.34358 3.55433 3.57684 3.65247 3.67724 3.69910 3.87678 3.92671 4.04917 4.09696 4.13396 4.19699 4.24206 4.26706 4.38521 4.46765 4.49233 4.53084 4.54677 4.62888 4.71632 4.78515 4.84678 4.89323 4.90835 4.97595 5.06586 5.24569 5.35642 5.40400 5.48006 5.62010 5.83110 6.25203 6.40806 6.45896 6.57635 7.00221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.064 4.064 3 Si 0.687 3.313 4 C -0.179 4.179 5 C 0.012 3.988 6 C -0.189 4.189 7 C 0.569 3.431 8 O -0.525 6.525 9 N -0.708 5.708 10 C 0.120 3.880 11 H 0.110 0.890 12 C -0.135 4.135 13 C -0.111 4.111 14 H 0.102 0.898 15 C 0.069 3.931 16 O -0.313 6.313 17 C 0.129 3.871 18 C -0.153 4.153 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.080 4.080 22 C -0.211 4.211 23 C -0.144 4.144 24 C 0.140 3.860 25 N -0.477 5.477 26 C 0.130 3.870 27 H 0.381 0.619 28 H 0.120 0.880 29 H -0.253 1.253 30 H -0.248 1.248 31 H 0.152 0.848 32 H 0.401 0.599 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.161 0.839 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 0.737 3.397 3.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.587 3.413 4 C -0.182 4.182 5 C -0.014 4.014 6 C -0.194 4.194 7 C 0.355 3.645 8 O -0.401 6.401 9 N -0.360 5.360 10 C 0.015 3.985 11 H 0.128 0.872 12 C -0.174 4.174 13 C -0.129 4.129 14 H 0.120 0.880 15 C -0.006 4.006 16 O -0.227 6.227 17 C 0.084 3.916 18 C -0.172 4.172 19 C -0.098 4.098 20 C -0.178 4.178 21 C -0.099 4.099 22 C -0.229 4.229 23 C -0.182 4.182 24 C -0.018 4.018 25 N -0.185 5.185 26 C -0.026 4.026 27 H 0.228 0.772 28 H 0.137 0.863 29 H -0.177 1.177 30 H -0.172 1.172 31 H 0.170 0.830 32 H 0.237 0.763 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.178 0.822 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.376 1.219 2.398 3.589 hybrid contribution 0.047 -1.139 -0.369 1.198 sum 2.423 0.080 2.029 3.161 Atomic orbital electron populations 1.86553 1.16604 1.81655 1.49264 1.25032 0.85613 1.10326 0.96605 0.94866 0.81180 0.77179 0.88033 1.21440 1.02002 0.95417 0.99297 1.21642 0.91585 0.93276 0.94882 1.21010 1.04998 0.94969 0.98411 1.17996 0.78766 0.86402 0.81335 1.90828 1.39917 1.64387 1.44999 1.45551 1.57619 1.10215 1.22591 1.21881 0.96431 0.81121 0.99081 0.87216 1.23339 0.97875 1.02352 0.93791 1.22657 0.97854 0.99675 0.92748 0.87975 1.22847 0.94644 0.97200 0.85944 1.86070 1.68283 1.41607 1.26724 1.19030 0.95345 0.89366 0.87868 1.20488 1.02216 1.01589 0.92918 1.21028 0.98016 0.93457 0.97326 1.21123 1.00333 0.96966 0.99331 1.20995 0.96864 0.99106 0.92889 1.21271 1.05727 0.94597 1.01351 1.23539 0.96729 1.03437 0.94527 1.23029 0.92054 0.89531 0.97232 1.67720 1.19469 1.10456 1.20818 1.22884 0.91424 0.99884 0.88400 0.77191 0.86281 1.17733 1.17239 0.83000 0.76290 0.89998 0.88031 0.91729 0.91633 0.85195 0.85245 0.85786 0.85732 0.85568 0.88680 0.90420 0.82183 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.26 12.84 -35.23 -0.45 -0.19 16 2 C -0.06 0.08 2.82 36.00 0.10 0.18 16 3 Si 0.69 -1.56 29.83 -169.99 -5.07 -6.63 16 4 C -0.18 0.10 5.35 -104.54 -0.56 -0.46 16 5 C 0.01 0.01 9.38 -38.87 -0.36 -0.35 16 6 C -0.19 -0.09 5.89 -104.82 -0.62 -0.70 16 7 C 0.57 0.87 7.78 -12.33 -0.10 0.78 16 8 O -0.53 -2.83 16.02 5.32 0.09 -2.74 16 9 N -0.71 1.02 5.21 -53.87 -0.28 0.74 16 10 C 0.12 -0.17 4.33 -67.03 -0.29 -0.46 16 11 H 0.11 0.02 7.46 -51.93 -0.39 -0.37 16 12 C -0.14 0.48 7.39 -25.92 -0.19 0.28 16 13 C -0.11 0.28 3.88 -89.81 -0.35 -0.07 16 14 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 15 C 0.07 -0.09 4.57 37.16 0.17 0.07 16 16 O -0.31 -0.50 10.14 -19.40 -0.20 -0.70 16 17 C 0.13 0.26 6.69 -39.21 -0.26 0.00 16 18 C -0.15 -0.26 9.99 -39.43 -0.39 -0.65 16 19 C -0.08 -0.06 10.04 -39.61 -0.40 -0.46 16 20 C -0.16 -0.10 10.04 -39.56 -0.40 -0.50 16 21 C -0.08 -0.05 10.04 -39.61 -0.40 -0.45 16 22 C -0.21 -0.21 9.04 -39.43 -0.36 -0.56 16 23 C -0.14 0.20 7.44 -25.84 -0.19 0.01 16 24 C 0.14 -0.12 10.71 -17.14 -0.18 -0.30 16 25 N -0.48 -0.20 10.35 -12.91 -0.13 -0.34 16 26 C 0.13 -0.10 9.84 -17.47 -0.17 -0.28 16 27 H 0.38 -1.69 8.70 45.56 0.40 -1.29 16 28 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H -0.25 0.01 7.11 56.52 0.40 0.41 16 30 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 31 H 0.15 0.24 7.74 -52.49 -0.41 -0.17 16 32 H 0.40 -1.61 6.77 -40.82 -0.28 -1.89 16 33 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 34 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 35 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 36 H 0.07 -0.13 7.40 -51.93 -0.38 -0.51 16 37 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 38 H 0.13 -0.17 8.06 -52.48 -0.42 -0.59 16 39 H 0.12 -0.14 8.06 -52.49 -0.42 -0.56 16 40 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 41 H 0.13 -0.11 6.30 -52.49 -0.33 -0.44 16 42 H 0.09 -0.15 7.92 -51.93 -0.41 -0.57 16 43 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.16 -0.64 6.42 -52.48 -0.34 -0.98 16 45 H 0.16 -0.52 4.91 -52.49 -0.26 -0.77 16 LS Contribution 377.81 15.07 5.69 5.69 Total: 0.00 -9.31 377.81 -11.09 -20.40 By element: Atomic # 1 Polarization: -6.52 SS G_CDS: -5.78 Total: -12.30 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -4.95 Total: -3.93 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.41 Total: 0.40 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.56 Total: -3.63 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: -5.07 Total: -6.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -9.31 -11.09 -20.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -9.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds