Wall clock time and date at job start Sun Mar 7 2021 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47274 * 2 1 4 4 C 1.50698 * 109.47081 * 120.00207 * 2 1 3 5 5 C 1.38355 * 120.34791 * 65.26345 * 4 2 1 6 6 C 1.40026 * 118.28738 * 180.26162 * 5 4 2 7 7 C 1.47842 * 120.56007 * 179.73380 * 6 5 4 8 8 O 1.21557 * 119.99885 * 359.71714 * 7 6 5 9 9 N 1.34774 * 119.99878 * 179.72131 * 7 6 5 10 10 C 1.46506 * 119.99903 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84540 * 23.80460 * 10 9 7 12 12 C 1.53776 * 113.61307 * 154.99797 * 10 9 7 13 13 C 1.53779 * 87.07861 * 89.11850 * 12 10 9 14 14 H 1.09002 * 113.61384 * 270.79213 * 13 12 10 15 15 C 1.53003 * 113.61497 * 139.98097 * 13 12 10 16 16 O 1.42899 * 109.47433 * 176.52667 * 15 13 12 17 17 C 1.35893 * 117.00392 * 179.97438 * 16 15 13 18 18 C 1.38736 * 120.05957 * 180.02562 * 17 16 15 19 19 C 1.38138 * 119.94337 * 180.30421 * 18 17 16 20 20 C 1.38271 * 120.05803 * 359.41293 * 19 18 17 21 21 C 1.38259 * 120.10889 * 0.60974 * 20 19 18 22 22 C 1.38146 * 120.05909 * 359.67363 * 21 20 19 23 23 C 1.53774 * 87.17396 * 25.38876 * 13 12 10 24 24 C 1.39517 * 118.87987 * 359.45420 * 6 5 4 25 25 N 1.31691 * 120.56703 * 0.29984 * 24 6 5 26 26 C 1.31927 * 121.88324 * 359.97438 * 25 24 6 27 27 H 0.96702 * 113.99709 * 299.99640 * 1 2 3 28 28 H 1.08996 * 109.46635 * 240.00350 * 2 1 3 29 29 H 1.48494 * 110.00061 * 178.68465 * 3 2 1 30 30 H 1.48498 * 109.99825 * 300.00715 * 3 2 1 31 31 H 1.07998 * 120.85743 * 359.97438 * 5 4 2 32 32 H 0.96997 * 120.00122 * 359.97438 * 9 7 6 33 33 H 1.08999 * 113.62096 * 334.57055 * 12 10 9 34 34 H 1.09005 * 113.61222 * 203.66504 * 12 10 9 35 35 H 1.09002 * 109.47184 * 56.52921 * 15 13 12 36 36 H 1.09001 * 109.46987 * 296.52627 * 15 13 12 37 37 H 1.08002 * 120.02291 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.96766 * 179.69880 * 19 18 17 39 39 H 1.08001 * 119.94323 * 180.30282 * 20 19 18 40 40 H 1.08006 * 119.97147 * 179.69573 * 21 20 19 41 41 H 1.07993 * 120.03340 * 180.02562 * 22 21 20 42 42 H 1.09005 * 113.61535 * 89.15936 * 23 13 12 43 43 H 1.09000 * 113.61685 * 220.05849 * 23 13 12 44 44 H 1.08006 * 119.71933 * 180.27544 * 24 6 5 45 45 H 1.07994 * 119.45776 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6933 -2.0624 1.4032 6 6 2.1748 -2.6778 2.5651 7 6 1.9439 -4.1184 2.8036 8 8 1.3270 -4.7780 1.9899 9 7 2.4172 -4.7004 3.9233 10 6 2.1879 -6.1280 4.1599 11 1 2.0122 -6.6865 3.2405 12 6 3.2334 -6.7750 5.0835 13 6 2.3242 -6.3796 6.2591 14 1 2.5331 -5.3870 6.6580 15 6 2.2307 -7.4500 7.3484 16 8 1.4338 -6.9613 8.4292 17 6 1.2495 -7.7953 9.4862 18 6 0.4862 -7.3856 10.5699 19 6 0.3056 -8.2329 11.6458 20 6 0.8747 -9.4930 11.6381 21 6 1.6362 -9.9036 10.5596 22 6 1.8247 -9.0578 9.4837 23 6 1.1524 -6.4096 5.2638 24 6 2.8812 -1.9097 3.4912 25 7 3.0866 -0.6264 3.2791 26 6 2.6402 -0.0188 2.1965 27 1 -0.3933 0.4417 0.7651 28 1 1.7922 -0.5138 -0.8900 29 1 3.5346 1.7702 0.0320 30 1 1.5614 2.4679 -1.2084 31 1 1.1461 -2.6275 0.6631 32 1 2.9096 -4.1742 4.5725 33 1 4.1945 -6.2609 5.0828 34 1 3.3284 -7.8524 4.9482 35 1 3.2306 -7.6864 7.7123 36 1 1.7720 -8.3487 6.9362 37 1 0.0373 -6.4032 10.5741 38 1 -0.2845 -7.9125 12.4917 39 1 0.7283 -10.1558 12.4781 40 1 2.0838 -10.8865 10.5581 41 1 2.4192 -9.3791 8.6413 42 1 0.6774 -7.3870 5.1778 43 1 0.4360 -5.6010 5.4083 44 1 3.2625 -2.3716 4.3900 45 1 2.8315 1.0355 2.0621 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_13287814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:57 Heat of formation + Delta-G solvation = -7.107562 kcal Electronic energy + Delta-G solvation = -27716.278365 eV Core-core repulsion = 23666.765062 eV Total energy + Delta-G solvation = -4049.513303 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05220 -41.29132 -40.70799 -39.41033 -38.09422 -37.94356 -34.88299 -33.80054 -32.94725 -31.99333 -31.01891 -29.14937 -27.30342 -26.75667 -26.07877 -24.33336 -23.88594 -23.35266 -22.56451 -21.92267 -20.39455 -19.36228 -19.13657 -18.16151 -17.91606 -17.70554 -17.29378 -16.92261 -16.79537 -16.64816 -16.51331 -16.19413 -15.85023 -15.57192 -15.35140 -15.08283 -14.73509 -14.66310 -14.39526 -14.34367 -14.23918 -14.04418 -13.57433 -13.49827 -13.48132 -13.13518 -12.73969 -12.50631 -12.19830 -12.12537 -12.05824 -11.72708 -11.63263 -11.49418 -11.20368 -11.11414 -10.62802 -10.59526 -10.38974 -10.15087 -9.96745 -9.17456 -5.03289 -0.61108 -0.06419 0.37809 0.48206 1.21512 1.58860 1.61912 1.85335 1.96915 2.18775 2.59308 2.83636 3.07466 3.35330 3.39355 3.43482 3.50150 3.62988 3.68090 3.70686 3.78051 3.79147 3.90565 3.98164 4.07529 4.22287 4.23484 4.29030 4.32739 4.42268 4.45733 4.49948 4.56178 4.63589 4.71361 4.74789 4.78002 4.80740 4.91174 4.99250 5.02303 5.07268 5.10162 5.29198 5.34270 5.47077 5.49456 5.60389 5.85363 6.30121 6.46288 6.61323 6.69209 6.98107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.074 4.074 3 Si 0.784 3.216 4 C -0.176 4.176 5 C -0.002 4.002 6 C -0.198 4.198 7 C 0.567 3.433 8 O -0.574 6.574 9 N -0.692 5.692 10 C 0.112 3.888 11 H 0.091 0.909 12 C -0.118 4.118 13 C -0.103 4.103 14 H 0.106 0.894 15 C 0.064 3.936 16 O -0.329 6.329 17 C 0.113 3.887 18 C -0.173 4.173 19 C -0.087 4.087 20 C -0.169 4.169 21 C -0.089 4.089 22 C -0.218 4.218 23 C -0.146 4.146 24 C 0.148 3.852 25 N -0.493 5.493 26 C 0.132 3.868 27 H 0.397 0.603 28 H 0.111 0.889 29 H -0.277 1.277 30 H -0.295 1.295 31 H 0.136 0.864 32 H 0.416 0.584 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.191 0.809 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 0.891 4.763 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.184 4.184 3 Si 0.688 3.312 4 C -0.179 4.179 5 C -0.029 4.029 6 C -0.203 4.203 7 C 0.355 3.645 8 O -0.453 6.453 9 N -0.344 5.344 10 C 0.007 3.993 11 H 0.109 0.891 12 C -0.156 4.156 13 C -0.121 4.121 14 H 0.124 0.876 15 C -0.011 4.011 16 O -0.244 6.244 17 C 0.067 3.933 18 C -0.192 4.192 19 C -0.105 4.105 20 C -0.188 4.188 21 C -0.107 4.107 22 C -0.237 4.237 23 C -0.185 4.185 24 C -0.011 4.011 25 N -0.200 5.200 26 C -0.024 4.024 27 H 0.247 0.753 28 H 0.128 0.872 29 H -0.203 1.203 30 H -0.222 1.222 31 H 0.153 0.847 32 H 0.254 0.746 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.208 0.792 45 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.594 1.361 3.825 5.422 hybrid contribution -0.365 -1.205 -0.822 1.503 sum 3.229 0.156 3.003 4.412 Atomic orbital electron populations 1.86514 1.17001 1.82201 1.50521 1.25258 0.85496 1.11555 0.96082 0.93767 0.78023 0.73858 0.85552 1.21453 1.02015 0.94771 0.99637 1.21656 0.92124 0.94059 0.95065 1.20979 1.05930 0.94508 0.98875 1.18212 0.78181 0.86726 0.81422 1.90801 1.42335 1.65444 1.46768 1.45452 1.56580 1.10434 1.21894 1.21932 0.97828 0.80961 0.98571 0.89104 1.23290 0.97628 1.03028 0.91666 1.22616 0.97318 0.99754 0.92428 0.87554 1.23026 0.94917 0.97663 0.85470 1.86046 1.68921 1.42173 1.27228 1.19248 0.95868 0.89983 0.88170 1.20705 1.02859 1.02098 0.93550 1.21295 0.98098 0.93541 0.97597 1.21423 1.00172 0.97196 0.99966 1.21315 0.96762 0.99903 0.92737 1.21508 1.05813 0.94306 1.02079 1.23542 0.96855 1.02908 0.95167 1.23437 0.90907 0.89132 0.97586 1.67808 1.20027 1.10878 1.21298 1.23241 0.90462 1.00875 0.87780 0.75292 0.87164 1.20313 1.22217 0.84661 0.74564 0.88500 0.86850 0.90593 0.91141 0.85067 0.83624 0.84183 0.83925 0.84021 0.88668 0.91963 0.79198 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.14 12.84 -148.98 -1.91 -1.77 16 2 C -0.07 0.13 2.82 71.24 0.20 0.33 16 3 Si 0.78 -3.71 29.83 68.60 2.05 -1.67 16 4 C -0.18 0.12 5.35 -19.81 -0.11 0.01 16 5 C 0.00 -0.01 9.38 22.73 0.21 0.21 16 6 C -0.20 -0.34 5.89 -19.99 -0.12 -0.46 16 7 C 0.57 2.50 7.78 86.79 0.68 3.17 16 8 O -0.57 -7.65 16.02 -3.89 -0.06 -7.71 16 9 N -0.69 1.83 5.21 -442.63 -2.31 -0.48 16 10 C 0.11 -0.28 4.33 45.57 0.20 -0.08 16 11 H 0.09 0.17 7.46 -2.39 -0.02 0.15 16 12 C -0.12 0.96 7.39 31.12 0.23 1.19 16 13 C -0.10 0.57 3.88 -10.27 -0.04 0.53 16 14 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 15 C 0.06 -0.21 4.57 71.98 0.33 0.12 16 16 O -0.33 -1.16 10.14 -92.34 -0.94 -2.09 16 17 C 0.11 0.50 6.69 22.51 0.15 0.65 16 18 C -0.17 -0.71 9.99 22.37 0.22 -0.49 16 19 C -0.09 -0.14 10.04 22.25 0.22 0.08 16 20 C -0.17 -0.15 10.04 22.28 0.22 0.08 16 21 C -0.09 -0.07 10.04 22.25 0.22 0.16 16 22 C -0.22 -0.37 9.04 22.37 0.20 -0.17 16 23 C -0.15 0.32 7.44 31.17 0.23 0.55 16 24 C 0.15 -0.35 10.71 85.02 0.91 0.57 16 25 N -0.49 0.07 10.35 -194.76 -2.01 -1.95 16 26 C 0.13 -0.30 9.84 84.71 0.83 0.53 16 27 H 0.40 -3.45 8.70 -74.06 -0.64 -4.10 16 28 H 0.11 -0.04 7.96 -2.39 -0.02 -0.06 16 29 H -0.28 0.18 7.11 99.48 0.71 0.89 16 30 H -0.29 -0.91 7.11 99.48 0.71 -0.21 16 31 H 0.14 0.84 7.74 -2.91 -0.02 0.81 16 32 H 0.42 -3.73 6.77 -92.71 -0.63 -4.35 16 33 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H 0.11 -1.13 8.10 -2.38 -0.02 -1.15 16 35 H 0.08 -0.42 7.66 -2.39 -0.02 -0.44 16 36 H 0.07 -0.31 7.40 -2.39 -0.02 -0.33 16 37 H 0.13 0.34 8.06 -2.91 -0.02 0.31 16 38 H 0.15 -0.40 8.06 -2.91 -0.02 -0.43 16 39 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 40 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 41 H 0.14 -0.36 6.30 -2.91 -0.02 -0.38 16 42 H 0.09 -0.22 7.92 -2.38 -0.02 -0.24 16 43 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 44 H 0.19 -1.85 6.42 -2.91 -0.02 -1.87 16 45 H 0.19 -1.46 4.91 -2.91 -0.01 -1.47 16 Total: 0.00 -23.63 377.81 -0.58 -24.21 By element: Atomic # 1 Polarization: -15.33 SS G_CDS: -0.19 Total: -15.53 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 4.80 Total: 6.99 kcal Atomic # 7 Polarization: 1.90 SS G_CDS: -4.32 Total: -2.42 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -2.91 Total: -11.57 kcal Atomic # 14 Polarization: -3.71 SS G_CDS: 2.05 Total: -1.67 kcal Total: -23.63 -0.58 -24.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13287814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.098 kcal (2) G-P(sol) polarization free energy of solvation -23.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds