Wall clock time and date at job start Sun Mar 7 2021 05:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37790 * 119.85082 * 2 1 4 4 C 1.39710 * 119.90846 * 180.02562 * 3 2 1 5 5 C 1.47528 * 120.19114 * 180.02562 * 4 3 2 6 6 O 1.21584 * 120.00230 * 179.97438 * 5 4 3 7 7 N 1.34780 * 120.00040 * 359.97438 * 5 4 3 8 8 C 1.46503 * 119.99978 * 179.97438 * 7 5 4 9 9 H 1.08991 * 112.84922 * 25.32961 * 8 7 5 10 10 C 1.53782 * 113.61335 * 156.52728 * 8 7 5 11 11 C 1.53780 * 87.08448 * 89.11322 * 10 8 7 12 12 H 1.09000 * 113.61258 * 270.88614 * 11 10 8 13 13 C 1.53001 * 113.61511 * 140.06331 * 11 10 8 14 14 O 1.42902 * 109.46766 * 175.00353 * 13 11 10 15 15 C 1.35902 * 116.99544 * 180.02562 * 14 13 11 16 16 C 1.38733 * 120.05574 * 359.72438 * 15 14 13 17 17 C 1.38149 * 119.94327 * 179.69992 * 16 15 14 18 18 C 1.38267 * 120.05404 * 0.59895 * 17 16 15 19 19 C 1.38270 * 120.11146 * 359.67738 * 18 17 16 20 20 C 1.38144 * 120.05500 * 0.02562 * 19 18 17 21 21 C 1.53780 * 113.61165 * 254.12937 * 8 7 5 22 22 C 1.40139 * 119.61502 * 0.02562 * 4 3 2 23 23 O 1.35652 * 120.14676 * 180.02562 * 22 4 3 24 24 C 1.38711 * 119.70158 * 359.97438 * 22 4 3 25 25 C 1.50701 * 119.95663 * 179.97438 * 24 22 4 26 26 O 1.42903 * 109.46878 * 75.00334 * 25 24 22 27 27 Si 1.86300 * 109.46948 * 195.00552 * 25 24 22 28 28 C 1.38059 * 120.08167 * 0.26225 * 24 22 4 29 29 H 1.08995 * 109.47527 * 89.99770 * 1 2 3 30 30 H 1.09006 * 109.46747 * 210.00102 * 1 2 3 31 31 H 1.08999 * 109.46793 * 329.99298 * 1 2 3 32 32 H 1.08007 * 120.04479 * 0.02656 * 3 2 1 33 33 H 0.97003 * 120.00113 * 359.97438 * 7 5 4 34 34 H 1.08998 * 113.61345 * 203.66753 * 10 8 7 35 35 H 1.09008 * 113.61413 * 334.47853 * 10 8 7 36 36 H 1.09003 * 109.47220 * 295.00143 * 13 11 10 37 37 H 1.08997 * 109.46862 * 55.00250 * 13 11 10 38 38 H 1.07995 * 120.02935 * 359.97438 * 16 15 14 39 39 H 1.08000 * 119.97503 * 180.27664 * 17 16 15 40 40 H 1.07994 * 119.94629 * 179.70423 * 18 17 16 41 41 H 1.07999 * 119.97408 * 180.02562 * 19 18 17 42 42 H 1.08003 * 120.02641 * 179.97438 * 20 19 18 43 43 H 1.08997 * 113.61585 * 25.44062 * 21 8 7 44 44 H 1.09003 * 113.61054 * 156.33409 * 21 8 7 45 45 H 0.96700 * 114.00345 * 269.97262 * 23 22 4 46 46 H 1.09001 * 109.46927 * 315.00269 * 25 24 22 47 47 H 0.96695 * 113.99582 * 59.99825 * 26 25 24 48 48 H 1.48497 * 110.00010 * 58.68023 * 27 25 24 49 49 H 1.48495 * 109.99824 * 180.02562 * 27 25 24 50 50 H 1.08001 * 119.79936 * 179.73798 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5899 1.1965 -0.0005 5 6 4.3306 2.4724 0.0000 6 8 5.5464 2.4696 0.0000 7 7 3.6594 3.6412 0.0005 8 6 4.3949 4.9082 0.0017 9 1 5.3926 4.8188 -0.4277 10 6 3.5865 6.0902 -0.5591 11 6 3.0796 6.3218 0.8742 12 1 2.1729 5.7654 1.1118 13 6 2.9888 7.7993 1.2609 14 8 2.4021 7.9167 2.5587 15 6 2.2478 9.1725 3.0546 16 6 2.6580 10.2689 2.3100 17 6 2.4944 11.5448 2.8138 18 6 1.9338 11.7290 4.0642 19 6 1.5294 10.6376 4.8106 20 6 1.6852 9.3601 4.3088 21 6 4.3703 5.6335 1.3575 22 6 4.2837 -0.0211 -0.0016 23 8 5.6402 -0.0324 -0.0016 24 6 3.5771 -1.2148 -0.0016 25 6 4.3173 -2.5275 -0.0034 26 8 4.8564 -2.7720 1.2973 27 14 3.1439 -3.9013 -0.4577 28 6 2.1965 -1.2016 -0.0060 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6511 2.1295 0.0004 33 1 2.6894 3.6435 0.0002 34 1 4.2067 6.9019 -0.9395 35 1 2.8045 5.7921 -1.2575 36 1 3.9884 8.2337 1.2735 37 1 2.3720 8.3278 0.5341 38 1 3.1008 10.1253 1.3355 39 1 2.8095 12.3989 2.2326 40 1 1.8111 12.7270 4.4583 41 1 1.0913 10.7841 5.7869 42 1 1.3695 8.5079 4.8924 43 1 4.2198 4.9668 2.2066 44 1 5.2044 6.3205 1.5003 45 1 6.0335 -0.0352 -0.8850 46 1 5.1279 -2.4865 -0.7309 47 1 4.1901 -2.8210 1.9963 48 1 2.5521 -3.6425 -1.7948 49 1 3.8616 -5.2014 -0.4624 50 1 1.6509 -2.1337 -0.0103 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_13422088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:13:13 Heat of formation + Delta-G solvation = -64.353719 kcal Electronic energy + Delta-G solvation = -32389.709294 eV Core-core repulsion = 27928.919712 eV Total energy + Delta-G solvation = -4460.789582 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.92821 -41.23840 -40.59341 -39.28500 -38.15545 -38.00958 -37.62399 -34.73535 -33.04768 -32.69007 -31.98853 -31.00962 -29.11852 -27.51218 -26.80748 -26.77373 -25.56759 -24.22187 -23.35327 -22.58377 -22.01718 -21.69268 -20.37843 -19.64694 -19.17551 -18.50089 -17.92649 -17.51489 -17.24674 -16.92831 -16.84191 -16.76600 -16.55879 -16.14784 -15.97403 -15.63887 -15.49379 -15.30845 -15.10995 -14.88676 -14.66163 -14.39965 -14.35057 -14.19198 -14.05872 -13.66019 -13.54480 -13.49325 -13.32385 -13.13743 -12.83898 -12.55939 -12.51025 -12.20487 -12.14794 -12.08411 -12.06868 -11.77650 -11.72572 -11.62600 -11.21946 -11.03306 -10.41946 -10.29602 -10.03557 -9.97365 -9.51751 -9.18350 -5.04628 -0.37476 0.05461 0.37125 0.47486 1.24723 1.62156 1.66801 1.91592 1.99511 2.17698 2.53267 2.82950 3.13632 3.36137 3.39922 3.48134 3.50591 3.62921 3.74945 3.76438 3.81150 3.89801 3.97128 4.10973 4.17045 4.21476 4.28003 4.31107 4.32546 4.41432 4.47794 4.49349 4.55478 4.60445 4.64593 4.69344 4.73168 4.78746 4.81901 4.92489 4.96496 4.97058 5.00837 5.06560 5.11090 5.17043 5.27310 5.33632 5.42133 5.46609 5.51416 5.59686 5.67917 5.84712 6.39905 6.45277 6.67034 6.74197 7.10270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.062 4.062 4 C -0.183 4.183 5 C 0.557 3.443 6 O -0.564 6.564 7 N -0.696 5.696 8 C 0.114 3.886 9 H 0.086 0.914 10 C -0.116 4.116 11 C -0.100 4.100 12 H 0.105 0.895 13 C 0.065 3.935 14 O -0.330 6.330 15 C 0.112 3.888 16 C -0.219 4.219 17 C -0.089 4.089 18 C -0.169 4.169 19 C -0.087 4.087 20 C -0.174 4.174 21 C -0.148 4.148 22 C 0.160 3.840 23 O -0.492 6.492 24 C -0.160 4.160 25 C -0.076 4.076 26 O -0.555 6.555 27 Si 0.791 3.209 28 C -0.069 4.069 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.158 0.842 33 H 0.413 0.587 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.399 0.601 46 H 0.096 0.904 47 H 0.392 0.608 48 H -0.276 1.276 49 H -0.300 1.300 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 2.093 -2.258 10.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.186 4.186 5 C 0.346 3.654 6 O -0.444 6.444 7 N -0.349 5.349 8 C 0.008 3.992 9 H 0.104 0.896 10 C -0.154 4.154 11 C -0.119 4.119 12 H 0.123 0.877 13 C -0.010 4.010 14 O -0.244 6.244 15 C 0.067 3.933 16 C -0.237 4.237 17 C -0.107 4.107 18 C -0.187 4.187 19 C -0.105 4.105 20 C -0.192 4.192 21 C -0.187 4.187 22 C 0.114 3.886 23 O -0.304 6.304 24 C -0.161 4.161 25 C -0.185 4.185 26 O -0.363 6.363 27 Si 0.695 3.305 28 C -0.087 4.087 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.176 0.824 33 H 0.252 0.748 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.258 0.742 46 H 0.114 0.886 47 H 0.242 0.758 48 H -0.202 1.202 49 H -0.228 1.228 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.596 1.305 -2.478 9.041 hybrid contribution 0.964 0.564 -0.644 1.289 sum -7.632 1.868 -3.121 8.455 Atomic orbital electron populations 1.20942 0.87708 1.04904 1.03885 1.20158 0.98287 0.91645 0.99203 1.21437 0.90849 1.00035 0.95761 1.20404 0.95175 0.92402 1.10663 1.18354 0.86911 0.84408 0.75753 1.90808 1.15074 1.87903 1.50579 1.45464 1.10645 1.04216 1.74583 1.21840 0.96888 0.82858 0.97611 0.89552 1.23271 1.00114 0.96840 0.95176 1.22632 0.98713 0.93581 0.96930 0.87663 1.23017 0.98224 0.97774 0.81978 1.86051 1.77836 1.25232 1.35320 1.19253 0.96221 0.83984 0.93861 1.21507 1.07187 0.92835 1.02183 1.21318 0.96576 0.96936 0.95860 1.21426 1.01803 0.99950 0.95534 1.21297 0.97474 0.91329 1.00400 1.20706 1.04891 0.98826 0.94795 1.23574 0.98509 0.99430 0.97207 1.18592 0.83467 0.90987 0.95603 1.84768 1.15606 1.96094 1.33906 1.20788 0.94964 0.95085 1.05284 1.25305 1.04189 1.00026 0.88958 1.86534 1.38624 1.94224 1.16920 0.93794 0.80932 0.72942 0.82819 1.21323 0.91699 0.99536 0.96102 0.89765 0.89392 0.90016 0.82420 0.74819 0.86847 0.88443 0.91217 0.90400 0.84045 0.83891 0.84133 0.83585 0.85090 0.92465 0.88777 0.74222 0.88639 0.75818 1.20193 1.22848 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.29 10.00 71.24 0.71 2.01 16 2 C -0.09 0.50 5.87 -19.90 -0.12 0.38 16 3 C -0.06 0.21 9.18 22.52 0.21 0.41 16 4 C -0.18 -0.78 5.89 -20.01 -0.12 -0.90 16 5 C 0.56 4.24 7.76 86.69 0.67 4.91 16 6 O -0.56 -9.34 14.78 16.94 0.25 -9.09 16 7 N -0.70 0.07 5.21 -443.21 -2.31 -2.24 16 8 C 0.11 -0.03 4.30 45.52 0.20 0.17 16 9 H 0.09 0.37 7.50 -2.39 -0.02 0.36 16 10 C -0.12 0.80 7.38 31.12 0.23 1.03 16 11 C -0.10 0.42 3.90 -10.17 -0.04 0.38 16 12 H 0.11 -0.50 8.14 -2.39 -0.02 -0.52 16 13 C 0.06 -0.16 4.58 71.98 0.33 0.17 16 14 O -0.33 -1.41 10.14 -92.44 -0.94 -2.35 16 15 C 0.11 0.55 6.69 22.51 0.15 0.70 16 16 C -0.22 -0.46 9.04 22.37 0.20 -0.26 16 17 C -0.09 -0.09 10.04 22.26 0.22 0.14 16 18 C -0.17 -0.18 10.04 22.28 0.22 0.05 16 19 C -0.09 -0.16 10.04 22.26 0.22 0.06 16 20 C -0.17 -0.78 9.99 22.37 0.22 -0.55 16 21 C -0.15 -0.02 7.45 31.21 0.23 0.21 16 22 C 0.16 1.10 6.69 22.84 0.15 1.26 16 23 O -0.49 -5.54 10.91 -68.75 -0.75 -6.29 16 24 C -0.16 -0.27 5.27 -19.79 -0.10 -0.37 16 25 C -0.08 -0.14 2.38 71.24 0.17 0.03 16 26 O -0.56 -2.62 12.88 -148.98 -1.92 -4.54 16 27 Si 0.79 -2.33 29.91 68.60 2.05 -0.28 16 28 C -0.07 0.29 8.30 22.30 0.19 0.47 16 29 H 0.08 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.09 -1.14 8.09 -2.38 -0.02 -1.16 16 31 H 0.08 -1.01 8.08 -2.39 -0.02 -1.03 16 32 H 0.16 -1.55 6.40 -2.91 -0.02 -1.57 16 33 H 0.41 -2.72 6.73 -92.71 -0.62 -3.34 16 34 H 0.11 -1.01 8.10 -2.39 -0.02 -1.03 16 35 H 0.10 -0.93 8.14 -2.38 -0.02 -0.95 16 36 H 0.07 -0.23 7.36 -2.39 -0.02 -0.25 16 37 H 0.08 -0.39 7.67 -2.39 -0.02 -0.41 16 38 H 0.14 -0.30 6.30 -2.91 -0.02 -0.31 16 39 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 40 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 41 H 0.15 -0.38 8.06 -2.91 -0.02 -0.40 16 42 H 0.13 0.39 8.06 -2.91 -0.02 0.36 16 43 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.09 -0.01 7.91 -2.39 -0.02 -0.03 16 45 H 0.40 1.98 9.06 -74.06 -0.67 1.31 16 46 H 0.10 0.39 7.83 -2.39 -0.02 0.37 16 47 H 0.39 -1.62 8.70 -74.06 -0.64 -2.27 16 48 H -0.28 -0.13 7.11 99.48 0.71 0.57 16 49 H -0.30 -1.57 7.11 99.48 0.71 -0.86 16 50 H 0.17 -1.73 5.09 -2.91 -0.01 -1.74 16 Total: 0.00 -28.62 412.45 -0.56 -29.18 By element: Atomic # 1 Polarization: -13.77 SS G_CDS: -0.90 Total: -14.67 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 3.96 Total: 10.30 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -2.31 Total: -2.24 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -3.36 Total: -22.27 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.05 Total: -0.28 kcal Total: -28.62 -0.56 -29.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_13422088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.178 kcal (2) G-P(sol) polarization free energy of solvation -28.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds