Wall clock time and date at job start Sun Mar 7 2021 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86306 * 109.46934 * 2 1 4 4 C 1.50696 * 109.47295 * 239.99733 * 2 1 3 5 5 C 1.34859 * 125.89011 * 119.95877 * 4 2 1 6 6 C 1.40885 * 107.41515 * 179.80640 * 5 4 2 7 7 C 1.34848 * 107.42034 * 0.37503 * 6 5 4 8 8 C 1.50695 * 125.89154 * 179.88451 * 7 6 5 9 9 C 1.50701 * 109.47283 * 274.69453 * 8 7 6 10 10 O 1.21280 * 120.00170 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00083 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00077 * 180.02562 * 11 9 8 13 13 H 1.09005 * 112.84750 * 23.80236 * 12 11 9 14 14 C 1.53778 * 113.61567 * 155.00460 * 12 11 9 15 15 C 1.53776 * 87.08465 * 89.11316 * 14 12 11 16 16 H 1.09001 * 113.61661 * 270.80214 * 15 14 12 17 17 C 1.52998 * 113.61428 * 139.97925 * 15 14 12 18 18 O 1.42901 * 109.47046 * 175.00210 * 17 15 14 19 19 C 1.35905 * 116.99604 * 180.02562 * 18 17 15 20 20 C 1.38723 * 120.05884 * 359.72201 * 19 18 17 21 21 C 1.38145 * 119.94323 * 179.77076 * 20 19 18 22 22 C 1.38260 * 120.05692 * 0.50972 * 21 20 19 23 23 C 1.38268 * 120.10972 * 359.74026 * 22 21 20 24 24 C 1.38139 * 120.05510 * 0.02562 * 23 22 21 25 25 C 1.53784 * 87.08046 * 25.43342 * 15 14 12 26 26 N 1.36335 * 125.89508 * 299.99956 * 4 2 1 27 27 H 0.96702 * 113.99716 * 60.00583 * 1 2 3 28 28 H 1.09002 * 109.46967 * 119.99692 * 2 1 3 29 29 H 1.48499 * 109.99680 * 298.67680 * 3 2 1 30 30 H 1.48496 * 109.99868 * 59.99810 * 3 2 1 31 31 H 1.08006 * 126.28671 * 0.05580 * 5 4 2 32 32 H 1.07998 * 126.28907 * 180.24157 * 6 5 4 33 33 H 1.09001 * 109.47343 * 154.69691 * 8 7 6 34 34 H 1.08997 * 109.47222 * 34.69440 * 8 7 6 35 35 H 0.97002 * 120.00278 * 0.02562 * 11 9 8 36 36 H 1.09002 * 113.61364 * 334.56128 * 14 12 11 37 37 H 1.08997 * 113.61502 * 203.66402 * 14 12 11 38 38 H 1.08999 * 109.47084 * 55.00252 * 17 15 14 39 39 H 1.08998 * 109.47592 * 295.00354 * 17 15 14 40 40 H 1.08001 * 120.02769 * 0.02562 * 20 19 18 41 41 H 1.08006 * 119.97076 * 180.25587 * 21 20 19 42 42 H 1.08001 * 119.94806 * 179.77234 * 22 21 20 43 43 H 1.08008 * 119.97007 * 179.97438 * 23 22 21 44 44 H 1.08005 * 120.02914 * 180.02562 * 24 23 22 45 45 H 1.08999 * 113.61579 * 89.11443 * 25 15 14 46 46 H 1.09002 * 113.61460 * 220.01544 * 25 15 14 47 47 H 0.97003 * 125.63454 * 359.94692 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7093 -0.1725 -2.1917 6 6 2.9483 -1.1759 -3.1514 7 6 2.3005 -2.2863 -2.7443 8 6 2.2751 -3.6089 -3.4661 9 6 1.1817 -3.5945 -4.5030 10 8 0.4913 -2.6072 -4.6426 11 7 0.9717 -4.6784 -5.2761 12 6 -0.0908 -4.6641 -6.2846 13 1 -0.3556 -3.6568 -6.6062 14 6 0.1518 -5.6389 -7.4489 15 6 -0.5838 -6.6985 -6.6117 16 1 0.0722 -7.2663 -5.9519 17 6 -1.5159 -7.5906 -7.4340 18 8 -2.0612 -8.6110 -6.5952 19 6 -2.9154 -9.4949 -7.1749 20 6 -3.2269 -9.3791 -8.5217 21 6 -4.0917 -10.2818 -9.1096 22 6 -4.6549 -11.2938 -8.3543 23 6 -4.3501 -11.4083 -7.0106 24 6 -3.4821 -10.5110 -6.4191 25 6 -1.3041 -5.5331 -5.9133 26 7 1.6772 -2.0076 -1.5642 27 1 -0.3933 0.4416 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5879 2.4585 -1.2243 30 1 1.5614 2.4679 1.2084 31 1 3.0839 0.8402 -2.2186 32 1 3.5396 -1.0737 -4.0493 33 1 2.0869 -4.4096 -2.7508 34 1 3.2358 -3.7754 -3.9533 35 1 1.5241 -5.4679 -5.1648 36 1 1.2046 -5.8673 -7.6150 37 1 -0.3724 -5.3647 -8.3644 38 1 -0.9547 -8.0503 -8.2475 39 1 -2.3254 -6.9881 -7.8462 40 1 -2.7904 -8.5863 -9.1111 41 1 -4.3313 -10.1945 -10.1591 42 1 -5.3337 -11.9963 -8.8149 43 1 -4.7917 -12.1994 -6.4226 44 1 -3.2440 -10.6011 -5.3695 45 1 -2.2263 -5.2299 -6.4090 46 1 -1.4268 -5.6760 -4.8397 47 1 1.1416 -2.6297 -1.0473 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_14644196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:13:37 Heat of formation + Delta-G solvation = -6.545961 kcal Electronic energy + Delta-G solvation = -28122.449963 eV Core-core repulsion = 24045.649535 eV Total energy + Delta-G solvation = -4076.800428 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.35201 -41.45872 -40.83613 -39.43613 -38.11827 -37.85956 -34.56190 -33.03517 -32.02539 -31.92612 -31.06901 -29.69292 -28.77443 -26.75875 -25.41974 -24.39594 -23.40351 -22.61890 -22.21950 -21.36197 -21.02389 -20.32066 -19.22104 -19.01082 -18.27458 -17.35377 -17.22613 -16.94563 -16.78027 -16.62916 -16.39859 -16.34745 -15.67602 -15.38209 -15.23914 -15.12163 -14.79387 -14.58617 -14.36906 -14.25102 -14.15398 -14.03797 -13.86188 -13.60007 -13.54323 -13.41739 -13.14696 -12.76573 -12.52547 -12.21612 -12.11740 -12.07193 -11.87617 -11.72453 -11.62464 -11.21332 -11.03292 -10.84425 -10.10331 -9.99068 -9.80267 -9.20054 -8.97299 -4.89199 0.35483 0.45844 1.06894 1.30371 1.57298 1.66724 1.83820 1.92938 2.16533 2.27372 2.49478 2.81328 3.35413 3.40361 3.49308 3.66423 3.74078 3.78654 3.80083 3.88480 3.95777 4.02145 4.20127 4.21057 4.27095 4.30376 4.41828 4.43003 4.47807 4.50659 4.54148 4.61041 4.67339 4.69298 4.72686 4.79490 4.82893 4.96988 5.02608 5.05028 5.15482 5.25106 5.28642 5.32010 5.45137 5.56848 5.58124 5.83106 5.97793 6.12844 6.36433 6.43448 6.49592 6.66086 7.23314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.063 4.063 3 Si 0.800 3.200 4 C -0.019 4.019 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.032 3.968 8 C -0.067 4.067 9 C 0.513 3.487 10 O -0.578 6.578 11 N -0.701 5.701 12 C 0.115 3.885 13 H 0.083 0.917 14 C -0.119 4.119 15 C -0.100 4.100 16 H 0.107 0.893 17 C 0.064 3.936 18 O -0.330 6.330 19 C 0.112 3.888 20 C -0.219 4.219 21 C -0.089 4.089 22 C -0.169 4.169 23 C -0.087 4.087 24 C -0.174 4.174 25 C -0.148 4.148 26 N -0.537 5.537 27 H 0.385 0.615 28 H 0.127 0.873 29 H -0.292 1.292 30 H -0.296 1.296 31 H 0.151 0.849 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.418 0.582 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.131 0.869 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 -5.022 -2.583 7.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.171 4.171 3 Si 0.704 3.296 4 C -0.133 4.133 5 C -0.226 4.226 6 C -0.223 4.223 7 C -0.082 4.082 8 C -0.107 4.107 9 C 0.300 3.700 10 O -0.457 6.457 11 N -0.354 5.354 12 C 0.009 3.991 13 H 0.101 0.899 14 C -0.157 4.157 15 C -0.119 4.119 16 H 0.125 0.875 17 C -0.011 4.011 18 O -0.244 6.244 19 C 0.067 3.933 20 C -0.237 4.237 21 C -0.107 4.107 22 C -0.187 4.187 23 C -0.105 4.105 24 C -0.192 4.192 25 C -0.187 4.187 26 N -0.133 5.133 27 H 0.234 0.766 28 H 0.145 0.855 29 H -0.219 1.219 30 H -0.224 1.224 31 H 0.169 0.831 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.165 0.835 35 H 0.256 0.744 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.149 0.851 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.120 -3.892 -1.848 5.962 hybrid contribution -1.477 -0.634 -0.433 1.665 sum 2.643 -4.526 -2.281 5.716 Atomic orbital electron populations 1.86533 1.18965 1.80576 1.50171 1.25024 0.83023 1.12326 0.96747 0.93441 0.90009 0.70136 0.76054 1.20921 1.06109 0.85772 1.00480 1.20918 1.04897 1.00652 0.96148 1.20854 1.06763 0.92987 1.01717 1.19927 1.01331 0.97558 0.89377 1.20256 0.99980 0.94075 0.96345 1.21085 0.84689 0.82200 0.82019 1.90753 1.50010 1.34828 1.70064 1.45565 1.35810 1.17302 1.36685 1.21765 0.88253 0.99464 0.89622 0.89926 1.23271 1.02530 0.92893 0.96975 1.22590 0.97215 0.93725 0.98337 0.87507 1.23032 0.96677 0.87906 0.93470 1.86048 1.58252 1.40306 1.39828 1.19252 0.91230 0.90643 0.92218 1.21504 1.04378 1.03733 0.94120 1.21319 0.94879 0.93606 1.00890 1.21428 1.02522 1.00213 0.94540 1.21300 0.95749 0.97997 0.95466 1.20704 1.01379 0.96248 1.00883 1.23512 0.98005 0.96075 1.01065 1.41890 1.40929 1.11048 1.19405 0.76566 0.85494 1.21905 1.22369 0.83110 0.83999 0.85439 0.83511 0.74416 0.88466 0.87360 0.90587 0.91363 0.84092 0.83885 0.84116 0.83573 0.85066 0.89243 0.92187 0.74449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.05 12.88 -148.98 -1.92 -4.97 16 2 C -0.06 -0.11 3.08 71.23 0.22 0.10 16 3 Si 0.80 0.20 30.59 68.60 2.10 2.30 16 4 C -0.02 -0.08 6.51 41.08 0.27 0.19 16 5 C -0.20 -0.96 9.37 22.14 0.21 -0.76 16 6 C -0.20 -1.00 10.76 22.14 0.24 -0.76 16 7 C 0.03 0.09 5.66 41.08 0.23 0.32 16 8 C -0.07 0.31 6.24 29.10 0.18 0.50 16 9 C 0.51 0.80 7.82 87.66 0.69 1.48 16 10 O -0.58 -7.35 15.63 -3.03 -0.05 -7.40 16 11 N -0.70 2.95 5.26 -440.03 -2.32 0.63 16 12 C 0.11 -0.24 4.32 45.52 0.20 -0.05 16 13 H 0.08 0.27 7.46 -2.38 -0.02 0.25 16 14 C -0.12 0.89 7.39 31.12 0.23 1.12 16 15 C -0.10 0.51 3.89 -10.27 -0.04 0.47 16 16 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 17 C 0.06 -0.17 4.58 71.98 0.33 0.16 16 18 O -0.33 -1.32 10.14 -92.48 -0.94 -2.26 16 19 C 0.11 0.54 6.69 22.50 0.15 0.69 16 20 C -0.22 -0.46 9.04 22.36 0.20 -0.25 16 21 C -0.09 -0.09 10.04 22.25 0.22 0.14 16 22 C -0.17 -0.17 10.04 22.28 0.22 0.05 16 23 C -0.09 -0.15 10.04 22.25 0.22 0.07 16 24 C -0.17 -0.75 9.99 22.36 0.22 -0.53 16 25 C -0.15 0.21 7.43 31.12 0.23 0.45 16 26 N -0.54 -1.56 6.07 -171.13 -1.04 -2.60 16 27 H 0.39 0.75 8.70 -74.06 -0.64 0.11 16 28 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 29 H -0.29 -1.74 7.11 99.48 0.71 -1.04 16 30 H -0.30 -1.93 7.11 99.48 0.71 -1.22 16 31 H 0.15 0.21 6.22 -2.91 -0.02 0.20 16 32 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 33 H 0.13 -1.29 8.14 -2.39 -0.02 -1.31 16 34 H 0.15 -1.53 8.14 -2.39 -0.02 -1.55 16 35 H 0.42 -4.53 8.70 -92.71 -0.81 -5.34 16 36 H 0.10 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16 38 H 0.08 -0.37 7.67 -2.39 -0.02 -0.39 16 39 H 0.07 -0.23 7.35 -2.39 -0.02 -0.25 16 40 H 0.14 -0.28 6.30 -2.91 -0.02 -0.30 16 41 H 0.14 -0.50 8.06 -2.91 -0.02 -0.53 16 42 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 43 H 0.15 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.13 0.36 8.06 -2.91 -0.02 0.33 16 45 H 0.09 -0.09 7.90 -2.39 -0.02 -0.10 16 46 H 0.06 0.09 8.14 -2.39 -0.02 0.08 16 47 H 0.42 -0.11 8.96 -92.71 -0.83 -0.94 16 Total: 0.00 -25.02 394.00 -1.16 -26.19 By element: Atomic # 1 Polarization: -14.06 SS G_CDS: -1.23 Total: -15.29 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 4.23 Total: 3.40 kcal Atomic # 7 Polarization: 1.39 SS G_CDS: -3.36 Total: -1.97 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -2.90 Total: -14.63 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: 2.10 Total: 2.30 kcal Total: -25.02 -1.16 -26.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_14644196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.641 kcal (2) G-P(sol) polarization free energy of solvation -25.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds