Wall clock time and date at job start Sun Mar 7 2021 05:14:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42895 * 1
3 3 Si 1.86301 * 109.46918 * 2 1
4 4 C 1.50701 * 109.46918 * 240.00035 * 2 1 3
5 5 C 1.38237 * 119.94675 * 299.99857 * 4 2 1
6 6 C 1.38167 * 120.05632 * 179.97438 * 5 4 2
7 7 N 1.48009 * 120.02831 * 179.97438 * 6 5 4
8 8 O 1.21791 * 119.99988 * 0.02562 * 7 6 5
9 9 O 1.21802 * 119.99940 * 180.02562 * 7 6 5
10 10 C 1.38714 * 119.94546 * 0.02562 * 6 5 4
11 11 O 1.35902 * 120.05891 * 179.97438 * 10 6 5
12 12 C 1.42895 * 117.00017 * 179.97438 * 11 10 6
13 13 C 1.50701 * 109.46838 * 179.97438 * 12 11 10
14 14 O 1.21280 * 120.00269 * 0.02562 * 13 12 11
15 15 N 1.34781 * 119.99932 * 179.97438 * 13 12 11
16 16 C 1.46500 * 119.99985 * 179.97438 * 15 13 12
17 17 H 1.09002 * 112.85221 * 334.67013 * 16 15 13
18 18 C 1.53785 * 113.68813 * 105.94035 * 16 15 13
19 19 C 1.53777 * 87.08241 * 89.12417 * 18 16 15
20 20 H 1.08994 * 113.61814 * 270.88533 * 19 18 16
21 21 C 1.52998 * 113.68937 * 139.98701 * 19 18 16
22 22 O 1.42904 * 109.46578 * 87.46871 * 21 19 18
23 23 C 1.35905 * 116.99662 * 179.97438 * 22 21 19
24 24 C 1.38733 * 120.05949 * 359.72956 * 23 22 21
25 25 C 1.38143 * 119.94445 * 179.74055 * 24 23 22
26 26 C 1.38266 * 120.05393 * 0.51008 * 25 24 23
27 27 C 1.38256 * 120.11388 * 359.75872 * 26 25 24
28 28 C 1.38147 * 120.05673 * 359.97438 * 27 26 25
29 29 C 1.53781 * 113.61339 * 203.47543 * 16 15 13
30 30 C 1.38752 * 119.88801 * 0.24820 * 10 6 5
31 31 C 1.38123 * 119.94252 * 359.47697 * 30 10 6
32 32 H 0.96700 * 114.00607 * 60.00281 * 1 2 3
33 33 H 1.09005 * 109.47176 * 120.00405 * 2 1 3
34 34 H 1.48494 * 110.00042 * 298.68148 * 3 2 1
35 35 H 1.48498 * 109.99895 * 60.00402 * 3 2 1
36 36 H 1.07998 * 119.97245 * 359.97438 * 5 4 2
37 37 H 1.08997 * 109.47351 * 60.00259 * 12 11 10
38 38 H 1.08994 * 109.47217 * 299.99197 * 12 11 10
39 39 H 0.96998 * 119.99866 * 0.02562 * 15 13 12
40 40 H 1.08999 * 113.61060 * 203.67840 * 18 16 15
41 41 H 1.08997 * 113.61198 * 334.57634 * 18 16 15
42 42 H 1.08993 * 109.47595 * 207.46467 * 21 19 18
43 43 H 1.09002 * 109.47655 * 327.46970 * 21 19 18
44 44 H 1.08004 * 120.02480 * 359.97438 * 24 23 22
45 45 H 1.08002 * 119.96899 * 180.27129 * 25 24 23
46 46 H 1.08004 * 119.94043 * 179.74489 * 26 25 24
47 47 H 1.08004 * 119.97360 * 179.97438 * 27 26 25
48 48 H 1.07999 * 120.03135 * 179.97438 * 28 27 26
49 49 H 1.09000 * 113.61578 * 25.34726 * 29 16 15
50 50 H 1.09001 * 113.61682 * 156.17306 * 29 16 15
51 51 H 1.07994 * 120.02974 * 179.72817 * 30 10 6
52 52 H 1.08004 * 119.97554 * 180.27097 * 31 30 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4289 0.0000 0.0000
3 14 2.0499 1.7565 0.0000
4 6 1.9312 -0.7104 -1.2305
5 6 1.5966 -2.0339 -1.4481
6 6 2.0554 -2.6873 -2.5758
7 7 1.6972 -4.1045 -2.8079
8 8 0.9974 -4.6951 -2.0050
9 8 2.1024 -4.6801 -3.8019
10 6 2.8529 -2.0142 -3.4897
11 8 3.3060 -2.6548 -4.5993
12 6 4.1219 -1.8994 -5.4968
13 6 4.5274 -2.7684 -6.6594
14 8 4.1540 -3.9210 -6.7141
15 7 5.3041 -2.2644 -7.6387
16 6 5.6988 -3.1094 -8.7686
17 1 5.7009 -4.1713 -8.5226
18 6 4.9562 -2.7810 -10.0746
19 6 6.0797 -1.7727 -10.3677
20 1 5.8894 -0.7778 -9.9651
21 6 6.5155 -1.7469 -11.8340
22 8 5.6920 -0.8317 -12.5596
23 6 5.9494 -0.6887 -13.8864
24 6 6.9770 -1.4101 -14.4766
25 6 7.2331 -1.2670 -15.8266
26 6 6.4731 -0.3977 -16.5872
27 6 5.4520 0.3265 -16.0002
28 6 5.1884 0.1829 -14.6518
29 6 6.9824 -2.6375 -9.4719
30 6 3.1921 -0.6875 -3.2661
31 6 2.7262 -0.0372 -2.1401
32 1 -0.3934 0.4416 -0.7650
33 1 1.7923 -0.5139 0.8900
34 1 1.5878 2.4585 -1.2242
35 1 1.5614 2.4678 1.2085
36 1 0.9760 -2.5576 -0.7361
37 1 5.0135 -1.5537 -4.9738
38 1 3.5597 -1.0406 -5.8635
39 1 5.6025 -1.3425 -7.5951
40 1 4.9216 -3.6129 -10.7781
41 1 3.9826 -2.3167 -9.9184
42 1 7.5560 -1.4289 -11.8984
43 1 6.4134 -2.7446 -12.2611
44 1 7.5738 -2.0859 -13.8820
45 1 8.0301 -1.8317 -16.2873
46 1 6.6775 -0.2841 -17.6416
47 1 4.8601 1.0052 -16.5964
48 1 4.3910 0.7491 -14.1936
49 1 7.6443 -2.0571 -8.8291
50 1 7.5024 -3.4303 -10.0095
51 1 3.8165 -0.1626 -3.9738
52 1 2.9863 0.9968 -1.9678
There are 76 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 76
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534226_4549638.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:14:37
Heat of formation + Delta-G solvation = -47.287826 kcal
Electronic energy + Delta-G solvation = -37822.874372 eV
Core-core repulsion = 32531.808387 eV
Total energy + Delta-G solvation = -5291.065985 eV
No. of doubly occupied orbitals = 76
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 415.160 amu
Computer time = 1.82 seconds
Orbital eigenvalues (eV)
-43.29836 -41.85705 -41.39086 -40.86425 -39.87940 -39.10814 -38.08234 -37.62604
-37.46480 -34.65826 -33.47769 -32.27499 -32.02080 -31.14418 -30.12730 -28.73886
-27.82521 -26.73712 -26.57885 -24.67392 -24.02866 -23.37212 -22.87780 -22.54576
-22.00628 -20.58476 -20.31287 -19.78135 -19.23501 -19.11124 -18.64278 -18.52631
-18.23934 -17.61394 -17.41309 -17.11449 -16.91724 -16.78533 -16.72038 -16.37203
-16.15752 -15.88873 -15.68325 -15.48416 -15.36261 -15.05400 -14.82229 -14.69611
-14.34814 -14.14797 -14.04276 -13.84656 -13.69063 -13.51682 -13.47083 -13.22269
-13.11179 -12.71165 -12.51028 -12.39286 -12.37742 -12.28139 -12.21876 -12.09916
-12.04701 -11.81977 -11.71594 -11.61048 -11.19047 -11.05753 -10.84133 -10.75856
-10.16973 -9.97148 -9.80417 -9.17870 -4.92161 -1.31788 -0.24605 0.15353
0.35058 0.37379 0.47837 1.18735 1.26419 1.42312 1.60484 2.01875
2.04750 2.19086 2.29612 2.83249 3.10871 3.23423 3.34349 3.41897
3.44362 3.50975 3.59174 3.71356 3.75987 3.77677 3.80489 3.90459
3.92043 3.98299 4.01948 4.23593 4.28934 4.29605 4.33332 4.39289
4.44546 4.49701 4.55603 4.56570 4.63687 4.67956 4.71861 4.75878
4.82776 4.83877 5.00302 5.04374 5.06864 5.07334 5.14409 5.18996
5.33847 5.46940 5.53055 5.60073 5.75486 5.84924 6.41038 6.42809
6.44380 6.45805 7.13883
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.551 6.551
2 C -0.091 4.091
3 Si 0.789 3.211
4 C -0.147 4.147
5 C -0.003 4.003
6 C -0.105 4.105
7 N 0.035 4.965
8 O -0.203 6.203
9 O -0.175 6.175
10 C 0.194 3.806
11 O -0.292 6.292
12 C 0.025 3.975
13 C 0.510 3.490
14 O -0.565 6.565
15 N -0.691 5.691
16 C 0.115 3.885
17 H 0.082 0.918
18 C -0.150 4.150
19 C -0.099 4.099
20 H 0.111 0.889
21 C 0.063 3.937
22 O -0.329 6.329
23 C 0.113 3.887
24 C -0.219 4.219
25 C -0.090 4.090
26 C -0.170 4.170
27 C -0.088 4.088
28 C -0.173 4.173
29 C -0.116 4.116
30 C -0.188 4.188
31 C -0.004 4.004
32 H 0.389 0.611
33 H 0.128 0.872
34 H -0.262 1.262
35 H -0.309 1.309
36 H 0.150 0.850
37 H 0.149 0.851
38 H 0.143 0.857
39 H 0.423 0.577
40 H 0.089 0.911
41 H 0.061 0.939
42 H 0.077 0.923
43 H 0.067 0.933
44 H 0.142 0.858
45 H 0.143 0.857
46 H 0.140 0.860
47 H 0.146 0.854
48 H 0.132 0.868
49 H 0.101 0.899
50 H 0.108 0.892
51 H 0.207 0.793
52 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.845 13.013 -2.017 16.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.359 6.359
2 C -0.198 4.198
3 Si 0.692 3.308
4 C -0.149 4.149
5 C -0.023 4.023
6 C -0.190 4.190
7 N 0.545 4.455
8 O -0.410 6.410
9 O -0.389 6.389
10 C 0.144 3.856
11 O -0.202 6.202
12 C -0.052 4.052
13 C 0.296 3.704
14 O -0.442 6.442
15 N -0.345 5.345
16 C 0.009 3.991
17 H 0.101 0.899
18 C -0.188 4.188
19 C -0.118 4.118
20 H 0.129 0.871
21 C -0.012 4.012
22 O -0.243 6.243
23 C 0.068 3.932
24 C -0.237 4.237
25 C -0.107 4.107
26 C -0.188 4.188
27 C -0.106 4.106
28 C -0.192 4.192
29 C -0.154 4.154
30 C -0.207 4.207
31 C -0.021 4.021
32 H 0.238 0.762
33 H 0.145 0.855
34 H -0.187 1.187
35 H -0.237 1.237
36 H 0.168 0.832
37 H 0.166 0.834
38 H 0.160 0.840
39 H 0.262 0.738
40 H 0.107 0.893
41 H 0.080 0.920
42 H 0.095 0.905
43 H 0.085 0.915
44 H 0.160 0.840
45 H 0.160 0.840
46 H 0.158 0.842
47 H 0.164 0.836
48 H 0.150 0.850
49 H 0.120 0.880
50 H 0.126 0.874
51 H 0.224 0.776
52 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges 9.437 13.193 -1.345 16.276
hybrid contribution -1.501 -1.065 -0.558 1.923
sum 7.936 12.128 -1.903 14.618
Atomic orbital electron populations
1.86632 1.18522 1.80455 1.50327 1.25523 0.83589 1.13081 0.97583
0.94184 0.89258 0.69926 0.77431 1.20382 1.02126 0.92550 0.99830
1.20838 0.94151 0.94793 0.92472 1.20871 1.13513 0.81496 1.03143
1.43904 0.98196 1.04016 0.99431 1.94501 1.36052 1.68365 1.42116
1.94680 1.56391 1.69407 1.18375 1.18975 0.89619 0.92093 0.84908
1.86470 1.63692 1.39747 1.30314 1.23120 0.98325 0.94325 0.89403
1.20540 0.78403 0.87654 0.83836 1.90854 1.54742 1.20313 1.78314
1.45287 1.51535 1.16432 1.21266 1.21800 0.96627 0.95503 0.85149
0.89931 1.23528 0.98448 0.99597 0.97265 1.22612 0.96953 0.99941
0.92256 0.87057 1.23044 0.94528 0.92267 0.91366 1.86046 1.58178
1.62040 1.18084 1.19239 0.94842 0.95717 0.83439 1.21509 1.00659
1.04387 0.97177 1.21317 0.99034 0.97188 0.93206 1.21420 0.97383
0.98665 1.01305 1.21295 0.97082 0.98466 0.93711 1.20705 1.02449
1.01645 0.94387 1.23267 0.95208 0.99895 0.97019 1.21814 1.06042
0.90432 1.02374 1.21727 0.89365 1.01280 0.89776 0.76160 0.85474
1.18728 1.23743 0.83222 0.83369 0.83998 0.73843 0.89288 0.92011
0.90480 0.91506 0.84050 0.83957 0.84216 0.83629 0.85000 0.88003
0.87358 0.77622 0.79417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.55 0.82 12.77 -148.98 -1.90 -1.09 16
2 C -0.09 0.59 2.82 71.24 0.20 0.79 16
3 Si 0.79 -8.12 29.78 68.60 2.04 -6.07 16
4 C -0.15 0.90 5.39 -19.85 -0.11 0.79 16
5 C 0.00 -0.01 9.11 22.25 0.20 0.20 16
6 C -0.10 -0.71 6.87 36.47 0.25 -0.46 16
7 N 0.03 0.58 4.45 -46.24 -0.21 0.38 16
8 O -0.20 -3.81 18.45 18.90 0.35 -3.46 16
9 O -0.17 -3.81 17.24 25.61 0.44 -3.37 16
10 C 0.19 0.02 6.67 22.51 0.15 0.17 16
11 O -0.29 -1.18 7.68 -63.43 -0.49 -1.67 16
12 C 0.03 -0.20 5.22 71.24 0.37 0.17 16
13 C 0.51 0.24 7.91 87.66 0.69 0.93 16
14 O -0.57 -8.27 16.12 16.01 0.26 -8.01 16
15 N -0.69 4.85 5.27 -440.02 -2.32 2.53 16
16 C 0.11 -0.44 4.30 45.52 0.20 -0.25 16
17 H 0.08 0.18 7.50 -2.39 -0.02 0.16 16
18 C -0.15 0.43 7.44 31.12 0.23 0.66 16
19 C -0.10 0.72 3.89 -10.27 -0.04 0.68 16
20 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16
21 C 0.06 -0.26 4.58 71.98 0.33 0.07 16
22 O -0.33 -0.83 10.14 -92.48 -0.94 -1.77 16
23 C 0.11 0.42 6.69 22.51 0.15 0.57 16
24 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16
25 C -0.09 -0.03 10.04 22.25 0.22 0.19 16
26 C -0.17 -0.08 10.04 22.28 0.22 0.15 16
27 C -0.09 -0.09 10.04 22.25 0.22 0.13 16
28 C -0.17 -0.58 9.99 22.37 0.22 -0.36 16
29 C -0.12 1.14 7.38 31.12 0.23 1.37 16
30 C -0.19 2.15 9.04 22.37 0.20 2.35 16
31 C 0.00 0.05 8.66 22.26 0.19 0.24 16
32 H 0.39 -3.02 8.70 -74.06 -0.64 -3.66 16
33 H 0.13 -0.91 7.96 -2.38 -0.02 -0.93 16
34 H -0.26 2.36 7.11 99.48 0.71 3.07 16
35 H -0.31 0.05 7.11 99.48 0.71 0.76 16
36 H 0.15 0.55 7.61 -2.91 -0.02 0.53 16
37 H 0.15 -2.58 7.65 -2.39 -0.02 -2.60 16
38 H 0.14 -2.32 7.68 -2.39 -0.02 -2.34 16
39 H 0.42 -6.60 8.71 -92.71 -0.81 -7.41 16
40 H 0.09 -0.16 7.90 -2.39 -0.02 -0.18 16
41 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16
42 H 0.08 -0.51 7.65 -2.39 -0.02 -0.53 16
43 H 0.07 -0.30 7.38 -2.39 -0.02 -0.32 16
44 H 0.14 -0.42 6.30 -2.91 -0.02 -0.44 16
45 H 0.14 -0.57 8.06 -2.91 -0.02 -0.59 16
46 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16
47 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16
48 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16
49 H 0.10 -1.35 8.14 -2.39 -0.02 -1.37 16
50 H 0.11 -1.15 8.10 -2.39 -0.02 -1.17 16
51 H 0.21 -4.46 6.30 -2.91 -0.02 -4.47 16
52 H 0.19 -3.72 4.87 -2.91 -0.01 -3.74 16
Total: 0.00 -42.45 442.20 1.18 -41.27
By element:
Atomic # 1 Polarization: -26.67 SS G_CDS: -0.41 Total: -27.08 kcal
Atomic # 6 Polarization: 3.99 SS G_CDS: 4.35 Total: 8.34 kcal
Atomic # 7 Polarization: 5.43 SS G_CDS: -2.52 Total: 2.90 kcal
Atomic # 8 Polarization: -17.08 SS G_CDS: -2.28 Total: -19.36 kcal
Atomic # 14 Polarization: -8.12 SS G_CDS: 2.04 Total: -6.07 kcal
Total: -42.45 1.18 -41.27 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534226_4549638.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.017 kcal
(2) G-P(sol) polarization free energy of solvation -42.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.469 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.82 seconds