Wall clock time and date at job start Sun Mar 7 2021 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47108 * 2 1 4 4 C 1.50698 * 109.47408 * 119.99774 * 2 1 3 5 5 C 1.38242 * 119.97777 * 245.00743 * 4 2 1 6 6 C 1.38282 * 120.11652 * 180.02562 * 5 4 2 7 7 C 1.38129 * 120.05466 * 359.97438 * 6 5 4 8 8 C 1.38757 * 119.94012 * 359.97438 * 7 6 5 9 9 O 1.35902 * 120.05313 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99916 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47361 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09002 * 112.85022 * 335.91707 * 14 13 11 16 16 C 1.53782 * 113.61718 * 107.22525 * 14 13 11 17 17 C 1.53774 * 87.08161 * 89.11276 * 16 14 13 18 18 H 1.09000 * 113.69696 * 270.87608 * 17 16 14 19 19 C 1.53000 * 113.61649 * 139.98421 * 17 16 14 20 20 O 1.42894 * 109.47515 * 87.50141 * 19 17 16 21 21 C 1.35901 * 117.00231 * 180.02562 * 20 19 17 22 22 C 1.38731 * 120.05483 * 359.72957 * 21 20 19 23 23 C 1.38142 * 119.94230 * 179.69901 * 22 21 20 24 24 C 1.38262 * 120.05542 * 0.59109 * 23 22 21 25 25 C 1.38265 * 120.11157 * 359.68281 * 24 23 22 26 26 C 1.38141 * 120.05686 * 0.02562 * 25 24 23 27 27 C 1.53781 * 113.61158 * 204.72374 * 14 13 11 28 28 C 1.38169 * 119.96844 * 65.25599 * 4 2 1 29 29 H 0.96698 * 114.00672 * 299.99786 * 1 2 3 30 30 H 1.09001 * 109.47612 * 240.00061 * 2 1 3 31 31 H 1.48504 * 109.99984 * 300.00292 * 3 2 1 32 32 H 1.48506 * 109.99951 * 61.31806 * 3 2 1 33 33 H 1.08002 * 119.93738 * 359.97438 * 5 4 2 34 34 H 1.07997 * 119.97772 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.03038 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47421 * 59.99643 * 10 9 8 37 37 H 1.09002 * 109.47461 * 299.99906 * 10 9 8 38 38 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 39 39 H 1.08999 * 113.61704 * 203.66488 * 16 14 13 40 40 H 1.09006 * 113.61098 * 334.56706 * 16 14 13 41 41 H 1.09003 * 109.47197 * 207.50993 * 19 17 16 42 42 H 1.09005 * 109.46557 * 327.49928 * 19 17 16 43 43 H 1.07999 * 120.02942 * 359.97438 * 22 21 20 44 44 H 1.08004 * 119.97489 * 180.27345 * 23 22 21 45 45 H 1.08005 * 119.94881 * 179.70060 * 24 23 22 46 46 H 1.08009 * 119.97272 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.03065 * 180.02562 * 26 25 24 48 48 H 1.08995 * 113.61890 * 25.43111 * 27 14 13 49 49 H 1.08997 * 113.61580 * 156.33630 * 27 14 13 50 50 H 1.08001 * 120.02938 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6386 -0.0116 2.1910 6 6 3.1014 -0.6607 3.3209 7 6 2.8574 -2.0094 3.4928 8 6 2.1469 -2.7127 2.5306 9 8 1.9060 -4.0398 2.6971 10 6 2.4132 -4.6469 3.8871 11 6 2.0514 -6.1098 3.8982 12 8 1.4207 -6.5855 2.9779 13 7 2.4277 -6.8893 4.9314 14 6 2.0811 -8.3127 4.9392 15 1 1.2091 -8.5394 4.3258 16 6 3.2794 -9.2400 4.6764 17 6 3.5163 -9.2346 6.1958 18 1 4.1666 -8.4281 6.5349 19 6 3.9197 -10.5991 6.7581 20 8 5.3386 -10.7476 6.6761 21 6 5.8646 -11.9130 7.1368 22 6 5.0328 -12.8910 7.6622 23 6 5.5694 -14.0772 8.1241 24 6 6.9354 -14.2851 8.0743 25 6 7.7671 -13.3096 7.5563 26 6 7.2349 -12.1241 7.0876 27 6 2.0181 -8.9235 6.3491 28 6 1.6891 -2.0606 1.3951 29 1 -0.3934 0.4416 0.7650 30 1 1.7924 -0.5138 -0.8900 31 1 1.5614 2.4680 -1.2085 32 1 1.5878 2.4586 1.2243 33 1 2.8307 1.0428 2.0582 34 1 3.6541 -0.1128 4.0697 35 1 3.2194 -2.5160 4.3752 36 1 1.9772 -4.1585 4.7585 37 1 3.4976 -4.5403 3.9156 38 1 2.9317 -6.5087 5.6676 39 1 2.9978 -10.2162 4.2818 40 1 4.0806 -8.7676 4.1079 41 1 3.6065 -10.6699 7.7997 42 1 3.4378 -11.3873 6.1795 43 1 3.9662 -12.7270 7.7060 44 1 4.9218 -14.8408 8.5292 45 1 7.3535 -15.2112 8.4404 46 1 8.8339 -13.4742 7.5189 47 1 7.8849 -11.3626 6.6827 48 1 1.8010 -8.1958 7.1310 49 1 1.3917 -9.8133 6.4119 50 1 1.1396 -2.6069 0.6427 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:52 Heat of formation + Delta-G solvation = -51.165343 kcal Electronic energy + Delta-G solvation = -31052.759719 eV Core-core repulsion = 26592.542028 eV Total energy + Delta-G solvation = -4460.217691 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.166 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.75377 -41.28510 -40.81667 -39.68561 -38.87510 -38.08702 -37.34354 -34.68716 -32.50643 -32.04817 -31.71339 -31.06576 -29.76209 -28.56406 -26.82687 -26.75472 -24.55441 -23.69687 -23.43457 -22.87598 -22.50626 -21.70536 -20.37150 -19.36486 -19.19480 -18.61223 -17.75085 -17.55133 -17.43007 -17.19639 -17.00476 -16.91164 -16.71850 -16.59177 -16.23079 -15.82199 -15.61488 -15.39861 -15.21148 -15.04533 -14.81848 -14.64556 -14.35196 -14.15269 -14.10589 -13.99646 -13.59612 -13.51608 -13.43810 -13.13250 -13.01269 -12.62268 -12.51352 -12.13862 -12.11905 -12.06419 -12.00535 -11.73089 -11.63069 -11.59812 -11.21478 -11.07981 -10.66785 -10.21512 -9.97567 -9.95492 -9.30132 -9.18407 -4.90991 0.19613 0.37002 0.38216 0.47394 1.26614 1.36303 1.44824 1.61054 1.96305 2.17934 2.54703 2.65459 2.82851 3.38912 3.39996 3.47184 3.49135 3.65633 3.74390 3.78223 3.83300 3.89777 3.97149 3.98338 4.05781 4.11757 4.22280 4.23905 4.28304 4.31940 4.35215 4.42491 4.49205 4.53060 4.55361 4.63428 4.65700 4.70411 4.73881 4.80047 4.97307 4.98058 5.01714 5.06487 5.11108 5.23495 5.33426 5.36144 5.44080 5.46440 5.49638 5.59680 5.68618 5.84551 6.24601 6.41965 6.45163 6.45960 7.06633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.095 4.095 3 Si 0.786 3.214 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.039 3.961 11 C 0.515 3.485 12 O -0.573 6.573 13 N -0.692 5.692 14 C 0.113 3.887 15 H 0.085 0.915 16 C -0.148 4.148 17 C -0.101 4.101 18 H 0.109 0.891 19 C 0.063 3.937 20 O -0.329 6.329 21 C 0.112 3.888 22 C -0.219 4.219 23 C -0.089 4.089 24 C -0.169 4.169 25 C -0.087 4.087 26 C -0.174 4.174 27 C -0.117 4.117 28 C -0.149 4.149 29 H 0.386 0.614 30 H 0.118 0.882 31 H -0.305 1.305 32 H -0.274 1.274 33 H 0.148 0.852 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.422 0.578 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.132 0.868 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 1.180 8.730 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.203 4.203 3 Si 0.690 3.310 4 C -0.081 4.081 5 C -0.176 4.176 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.237 6.237 10 C -0.039 4.039 11 C 0.301 3.699 12 O -0.451 6.451 13 N -0.346 5.346 14 C 0.008 3.992 15 H 0.103 0.897 16 C -0.187 4.187 17 C -0.119 4.119 18 H 0.127 0.873 19 C -0.011 4.011 20 O -0.244 6.244 21 C 0.067 3.933 22 C -0.238 4.238 23 C -0.107 4.107 24 C -0.187 4.187 25 C -0.105 4.105 26 C -0.192 4.192 27 C -0.155 4.155 28 C -0.168 4.168 29 H 0.236 0.764 30 H 0.136 0.864 31 H -0.234 1.234 32 H -0.200 1.200 33 H 0.165 0.835 34 H 0.180 0.820 35 H 0.178 0.822 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.260 0.740 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.150 0.850 48 H 0.117 0.883 49 H 0.129 0.871 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.359 1.383 7.327 8.637 hybrid contribution -1.172 -0.486 0.510 1.367 sum 3.187 0.897 7.837 8.507 Atomic orbital electron populations 1.86583 1.18658 1.80581 1.50111 1.25472 0.83465 1.12938 0.98401 0.93841 0.90002 0.70698 0.76494 1.20116 0.98180 0.92893 0.96958 1.21252 1.00597 1.00876 0.94856 1.21331 0.96821 0.93499 0.97153 1.21640 1.03422 0.96369 1.00547 1.19202 0.96350 0.82278 0.95363 1.86123 1.74620 1.20901 1.42073 1.22719 1.02608 0.89903 0.88679 1.20586 0.78661 0.88625 0.82016 1.90769 1.40977 1.76066 1.37288 1.45337 1.57394 1.08737 1.23101 1.21840 0.98230 0.79761 0.99406 0.89686 1.23529 0.98123 1.00396 0.96607 1.22608 0.97487 0.96365 0.95446 0.87305 1.23031 0.77922 0.98315 1.01849 1.86044 1.25003 1.34655 1.78669 1.19244 0.93360 0.85889 0.94782 1.21508 1.00681 0.95588 1.05992 1.21316 0.95846 0.96606 0.96961 1.21425 0.93882 1.00709 1.02724 1.21300 1.01142 0.92225 0.95843 1.20710 0.92532 0.99932 1.06039 1.23279 0.94542 1.02240 0.95451 1.20313 1.04312 0.94611 0.97599 0.76443 0.86421 1.23365 1.20020 0.83466 0.81982 0.82159 0.85551 0.85617 0.74025 0.88936 0.91913 0.90556 0.91314 0.84064 0.83934 0.84171 0.83583 0.85001 0.88331 0.87127 0.87033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.14 12.84 -148.98 -1.91 -5.05 16 2 C -0.10 -0.18 2.80 71.24 0.20 0.02 16 3 Si 0.79 -1.44 29.88 68.60 2.05 0.61 16 4 C -0.08 -0.19 5.35 -19.88 -0.11 -0.30 16 5 C -0.16 0.31 8.67 22.28 0.19 0.51 16 6 C -0.07 0.30 10.04 22.25 0.22 0.52 16 7 C -0.20 0.53 9.04 22.37 0.20 0.73 16 8 C 0.11 0.51 6.69 22.51 0.15 0.66 16 9 O -0.32 -2.38 9.67 -73.41 -0.71 -3.09 16 10 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 11 C 0.51 1.66 7.91 87.66 0.69 2.35 16 12 O -0.57 -8.87 16.10 16.00 0.26 -8.62 16 13 N -0.69 2.98 5.26 -440.03 -2.32 0.66 16 14 C 0.11 -0.29 4.32 45.52 0.20 -0.09 16 15 H 0.08 0.24 7.47 -2.39 -0.02 0.22 16 16 C -0.15 0.32 7.43 31.12 0.23 0.55 16 17 C -0.10 0.60 3.89 -10.27 -0.04 0.56 16 18 H 0.11 -0.77 8.14 -2.39 -0.02 -0.79 16 19 C 0.06 -0.22 4.58 71.98 0.33 0.11 16 20 O -0.33 -1.07 10.14 -92.44 -0.94 -2.01 16 21 C 0.11 0.48 6.69 22.51 0.15 0.63 16 22 C -0.22 -0.36 9.04 22.36 0.20 -0.16 16 23 C -0.09 -0.06 10.04 22.25 0.22 0.17 16 24 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 25 C -0.09 -0.12 10.04 22.25 0.22 0.10 16 26 C -0.17 -0.67 9.99 22.36 0.22 -0.44 16 27 C -0.12 0.98 7.39 31.12 0.23 1.21 16 28 C -0.15 -1.02 9.63 22.37 0.22 -0.80 16 29 H 0.39 -0.23 8.70 -74.06 -0.64 -0.88 16 30 H 0.12 0.17 7.96 -2.39 -0.02 0.15 16 31 H -0.31 -1.89 7.11 99.48 0.71 -1.19 16 32 H -0.27 -0.13 7.01 99.48 0.70 0.56 16 33 H 0.15 -0.91 4.84 -2.91 -0.01 -0.92 16 34 H 0.16 -1.70 8.06 -2.91 -0.02 -1.72 16 35 H 0.16 -1.55 6.30 -2.91 -0.02 -1.57 16 36 H 0.13 -1.19 7.66 -2.39 -0.02 -1.21 16 37 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 38 H 0.42 -5.02 8.70 -92.71 -0.81 -5.83 16 39 H 0.09 -0.17 7.90 -2.39 -0.02 -0.19 16 40 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 41 H 0.08 -0.44 7.65 -2.39 -0.02 -0.46 16 42 H 0.07 -0.29 7.37 -2.38 -0.02 -0.30 16 43 H 0.14 -0.36 6.30 -2.91 -0.02 -0.37 16 44 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 45 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16 46 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 47 H 0.13 0.28 8.06 -2.91 -0.02 0.26 16 48 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 49 H 0.11 -1.08 8.10 -2.39 -0.02 -1.10 16 50 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 Total: 0.00 -29.06 416.16 0.33 -28.74 By element: Atomic # 1 Polarization: -17.51 SS G_CDS: -0.44 Total: -17.96 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.34 Total: 6.71 kcal Atomic # 7 Polarization: 2.98 SS G_CDS: -2.32 Total: 0.66 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -3.30 Total: -18.77 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.05 Total: 0.61 kcal Total: -29.06 0.33 -28.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.428 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds