Wall clock time and date at job start Sun Mar 7 2021 05:15:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35899 * 117.00018 * 2 1
4 4 C 1.38607 * 120.02933 * 179.97438 * 3 2 1
5 5 C 1.38661 * 119.89089 * 179.69496 * 4 3 2
6 6 O 1.35898 * 120.02763 * 180.30076 * 5 4 3
7 7 C 1.42902 * 116.99980 * 359.97438 * 6 5 4
8 8 C 1.50702 * 109.47127 * 179.97438 * 7 6 5
9 9 O 1.21284 * 119.99867 * 0.02562 * 8 7 6
10 10 N 1.34775 * 120.00117 * 180.02562 * 8 7 6
11 11 C 1.46496 * 120.00078 * 180.02562 * 10 8 7
12 12 H 1.09000 * 112.84832 * 23.80601 * 11 10 8
13 13 C 1.53782 * 113.61558 * 154.99541 * 11 10 8
14 14 C 1.53780 * 87.07751 * 89.11518 * 13 11 10
15 15 H 1.09001 * 113.61827 * 270.88305 * 14 13 11
16 16 C 1.53008 * 113.61405 * 140.06594 * 14 13 11
17 17 O 1.42899 * 109.47331 * 175.00058 * 16 14 13
18 18 C 1.35897 * 117.00028 * 179.97438 * 17 16 14
19 19 C 1.38734 * 120.05478 * 359.73134 * 18 17 16
20 20 C 1.38148 * 119.94300 * 179.70060 * 19 18 17
21 21 C 1.38267 * 120.05232 * 0.59111 * 20 19 18
22 22 C 1.38268 * 120.11412 * 359.68270 * 21 20 19
23 23 C 1.38138 * 120.04989 * 0.02562 * 22 21 20
24 24 C 1.53776 * 113.61571 * 252.49667 * 11 10 8
25 25 C 1.38749 * 119.94317 * 0.28018 * 5 4 3
26 26 C 1.50703 * 119.97312 * 179.97438 * 25 5 4
27 27 O 1.42900 * 109.47029 * 74.99706 * 26 25 5
28 28 Si 1.86296 * 109.47234 * 195.00078 * 26 25 5
29 29 C 1.38202 * 120.05677 * 0.02562 * 25 5 4
30 30 C 1.38157 * 120.10718 * 359.97284 * 29 25 5
31 31 H 1.09004 * 109.47324 * 300.00034 * 1 2 3
32 32 H 1.08993 * 109.47167 * 60.00238 * 1 2 3
33 33 H 1.09005 * 109.46688 * 180.02562 * 1 2 3
34 34 H 1.08002 * 120.05734 * 359.97438 * 4 3 2
35 35 H 1.08998 * 109.47355 * 300.00087 * 7 6 5
36 36 H 1.09003 * 109.46834 * 60.00472 * 7 6 5
37 37 H 0.96997 * 119.99472 * 359.97438 * 10 8 7
38 38 H 1.08997 * 113.61805 * 203.66483 * 13 11 10
39 39 H 1.08998 * 113.61220 * 334.48730 * 13 11 10
40 40 H 1.08999 * 109.46880 * 295.00317 * 16 14 13
41 41 H 1.08994 * 109.46668 * 54.99984 * 16 14 13
42 42 H 1.08004 * 120.03092 * 359.97438 * 19 18 17
43 43 H 1.08001 * 119.97238 * 180.26962 * 20 19 18
44 44 H 1.07997 * 119.94261 * 179.70193 * 21 20 19
45 45 H 1.07996 * 119.97132 * 180.02562 * 22 21 20
46 46 H 1.08005 * 120.02093 * 180.02562 * 23 22 21
47 47 H 1.09002 * 113.61674 * 25.43075 * 24 11 10
48 48 H 1.09002 * 113.61489 * 156.33743 * 24 11 10
49 49 H 1.09002 * 109.47242 * 315.00154 * 26 25 5
50 50 H 0.96701 * 113.99445 * 60.00606 * 27 26 25
51 51 H 1.48499 * 110.00180 * 58.67918 * 28 26 25
52 52 H 1.48502 * 110.00046 * 179.97438 * 28 26 25
53 53 H 1.08001 * 119.94342 * 180.02562 * 29 25 5
54 54 H 1.07998 * 119.96795 * 180.02562 * 30 29 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0460 1.2109 0.0000
4 6 3.4301 1.2841 0.0005
5 6 4.0567 2.5211 -0.0059
6 8 5.4135 2.5961 -0.0115
7 6 6.1316 1.3606 -0.0099
8 6 7.6125 1.6402 -0.0175
9 8 8.0134 2.7849 -0.0231
10 7 8.4912 0.6184 -0.0179
11 6 9.9307 0.8902 -0.0247
12 1 10.1777 1.8730 0.3767
13 6 10.7755 -0.2484 0.5709
14 6 10.8274 -0.8450 -0.8455
15 1 10.0015 -1.5216 -1.0649
16 6 12.1912 -1.4333 -1.2131
17 8 12.1088 -2.0632 -2.4931
18 6 13.2428 -2.6398 -2.9711
19 6 14.4122 -2.5953 -2.2260
20 6 15.5620 -3.1876 -2.7113
21 6 15.5511 -3.8137 -3.9440
22 6 14.3884 -3.8545 -4.6911
23 6 13.2345 -3.2690 -4.2075
24 6 10.6092 0.5840 -1.3703
25 6 3.2970 3.6822 -0.0069
26 6 3.9773 5.0269 -0.0133
27 8 4.4992 5.2905 -1.3172
28 14 2.7452 6.3483 0.4414
29 6 1.9171 3.6065 -0.0010
30 6 1.2905 2.3752 0.0053
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 -0.3633 -1.0277 0.0005
34 1 4.0197 0.3792 0.0014
35 1 5.8735 0.7915 0.8831
36 1 5.8664 0.7851 -0.8969
37 1 8.1705 -0.2970 -0.0130
38 1 11.7467 0.0772 0.9435
39 1 10.2330 -0.8661 1.2866
40 1 12.9335 -0.6359 -1.2477
41 1 12.4831 -2.1693 -0.4641
42 1 14.4225 -2.1018 -1.2653
43 1 16.4715 -3.1570 -2.1297
44 1 16.4523 -4.2720 -4.3238
45 1 14.3823 -4.3446 -5.6535
46 1 12.3264 -3.3015 -4.7912
47 1 9.9321 0.6373 -2.2229
48 1 11.5350 1.1372 -1.5284
49 1 4.7921 5.0254 0.7107
50 1 3.8282 5.3069 -2.0134
51 1 2.1715 6.0682 1.7821
52 1 3.4038 7.6792 0.4392
53 1 1.3276 4.5115 -0.0023
54 1 0.2120 2.3187 0.0095
There are 74 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 74
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534226_4974312.mol2 54
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:15:00
Heat of formation + Delta-G solvation = -86.999404 kcal
Electronic energy + Delta-G solvation = -36068.200612 eV
Core-core repulsion = 31132.209229 eV
Total energy + Delta-G solvation = -4935.991384 eV
No. of doubly occupied orbitals = 74
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 400.181 amu
Computer time = 1.67 seconds
Orbital eigenvalues (eV)
-41.91737 -41.48096 -40.94372 -40.13423 -39.39273 -38.31731 -38.05602 -36.92586
-34.70791 -32.29988 -32.04657 -31.52188 -31.06164 -29.86724 -28.67610 -28.31556
-26.78017 -26.12134 -24.67564 -23.77573 -23.33634 -22.57504 -22.50867 -21.97633
-20.41092 -19.93546 -19.21094 -18.63133 -18.11343 -17.87342 -17.59181 -17.29590
-17.19887 -16.93503 -16.82739 -16.69312 -16.67760 -16.51432 -15.99013 -15.85619
-15.57126 -15.38064 -15.15628 -15.05303 -14.96224 -14.54200 -14.46619 -14.36073
-14.11687 -13.88648 -13.59667 -13.53097 -13.46919 -13.33295 -13.17572 -13.14111
-12.52695 -12.49794 -12.27169 -12.14180 -12.08579 -12.01899 -11.87573 -11.74367
-11.64643 -11.63542 -11.23678 -11.11354 -10.36430 -10.24015 -9.98405 -9.71296
-9.19370 -9.11187 -5.04164 0.19776 0.29049 0.36146 0.46503 1.31090
1.33102 1.37420 1.64170 1.98100 2.16654 2.23961 2.51885 2.56816
2.81980 3.36600 3.44534 3.46989 3.59577 3.72127 3.72873 3.76245
3.82224 3.88705 3.90136 3.96261 3.99184 4.07535 4.15466 4.20715
4.27194 4.30380 4.33701 4.38609 4.40535 4.43699 4.45875 4.48300
4.54067 4.60254 4.62538 4.68563 4.72315 4.77715 4.79813 4.95979
4.99506 5.01298 5.05564 5.08797 5.22591 5.26937 5.32618 5.44747
5.46023 5.49147 5.58724 5.83729 6.09934 6.33077 6.38970 6.44154
6.85347 7.03328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.331 6.331
3 C 0.164 3.836
4 C -0.254 4.254
5 C 0.173 3.827
6 O -0.305 6.305
7 C 0.035 3.965
8 C 0.516 3.484
9 O -0.568 6.568
10 N -0.693 5.693
11 C 0.113 3.887
12 H 0.085 0.915
13 C -0.117 4.117
14 C -0.101 4.101
15 H 0.107 0.893
16 C 0.064 3.936
17 O -0.330 6.330
18 C 0.112 3.888
19 C -0.219 4.219
20 C -0.089 4.089
21 C -0.169 4.169
22 C -0.087 4.087
23 C -0.174 4.174
24 C -0.147 4.147
25 C -0.203 4.203
26 C -0.069 4.069
27 O -0.558 6.558
28 Si 0.795 3.205
29 C -0.031 4.031
30 C -0.237 4.237
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.115 0.885
34 H 0.152 0.848
35 H 0.123 0.877
36 H 0.121 0.879
37 H 0.420 0.580
38 H 0.112 0.888
39 H 0.097 0.903
40 H 0.070 0.930
41 H 0.077 0.923
42 H 0.142 0.858
43 H 0.143 0.857
44 H 0.141 0.859
45 H 0.147 0.853
46 H 0.131 0.869
47 H 0.061 0.939
48 H 0.094 0.906
49 H 0.080 0.920
50 H 0.391 0.609
51 H -0.279 1.279
52 H -0.304 1.304
53 H 0.167 0.833
54 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.832 -6.550 0.482 8.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.244 6.244
3 C 0.117 3.883
4 C -0.273 4.273
5 C 0.126 3.874
6 O -0.218 6.218
7 C -0.042 4.042
8 C 0.303 3.697
9 O -0.446 6.446
10 N -0.347 5.347
11 C 0.008 3.992
12 H 0.104 0.896
13 C -0.155 4.155
14 C -0.119 4.119
15 H 0.125 0.875
16 C -0.010 4.010
17 O -0.244 6.244
18 C 0.067 3.933
19 C -0.237 4.237
20 C -0.107 4.107
21 C -0.187 4.187
22 C -0.105 4.105
23 C -0.192 4.192
24 C -0.186 4.186
25 C -0.205 4.205
26 C -0.177 4.177
27 O -0.366 6.366
28 Si 0.700 3.300
29 C -0.048 4.048
30 C -0.256 4.256
31 H 0.087 0.913
32 H 0.090 0.910
33 H 0.134 0.866
34 H 0.169 0.831
35 H 0.141 0.859
36 H 0.139 0.861
37 H 0.258 0.742
38 H 0.130 0.870
39 H 0.116 0.884
40 H 0.088 0.912
41 H 0.095 0.905
42 H 0.159 0.841
43 H 0.161 0.839
44 H 0.159 0.841
45 H 0.164 0.836
46 H 0.149 0.851
47 H 0.080 0.920
48 H 0.112 0.888
49 H 0.098 0.902
50 H 0.240 0.760
51 H -0.206 1.206
52 H -0.232 1.232
53 H 0.184 0.816
54 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -4.192 -5.117 1.292 6.740
hybrid contribution 0.633 -0.772 0.239 1.027
sum -3.559 -5.890 1.531 7.050
Atomic orbital electron populations
1.23418 0.75910 1.05722 1.02807 1.86056 1.23851 1.26591 1.87933
1.18875 0.91580 0.85102 0.92711 1.20545 0.93568 0.97309 1.15911
1.18632 0.81639 0.93351 0.93737 1.86220 1.15708 1.31614 1.88208
1.22722 0.88338 0.86541 1.06645 1.20476 0.88534 0.85145 0.75579
1.90778 1.80710 1.23271 1.49806 1.45341 1.05289 1.09492 1.74543
1.21849 0.79382 1.00233 0.97771 0.89642 1.23279 1.01269 0.95542
0.95375 1.22600 0.96695 0.95680 0.96939 0.87492 1.23021 0.98692
0.96783 0.82550 1.86046 1.32332 1.69157 1.36900 1.19250 0.85968
0.94110 0.94001 1.21509 0.93196 1.06718 1.02307 1.21320 0.98125
0.95298 0.95963 1.21428 0.99227 1.02370 0.95676 1.21297 0.91763
0.97129 1.00311 1.20704 1.00455 1.02870 0.95188 1.23527 1.01313
0.96588 0.97189 1.19757 0.93868 0.94004 1.12831 1.25154 1.04432
0.99763 0.88385 1.86544 1.39294 1.93797 1.16926 0.94115 0.80387
0.73021 0.82503 1.20868 0.91474 0.98644 0.93844 1.21457 1.01818
0.91138 1.11139 0.91286 0.91023 0.86627 0.83087 0.85901 0.86147
0.74153 0.86977 0.88410 0.91217 0.90515 0.84070 0.83891 0.84116
0.83567 0.85078 0.92031 0.88802 0.90216 0.76020 1.20586 1.23215
0.81602 0.82061
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16
2 O -0.33 -0.26 10.49 -92.41 -0.97 -1.23 16
3 C 0.16 0.28 6.68 22.49 0.15 0.43 16
4 C -0.25 -0.72 8.97 22.46 0.20 -0.52 16
5 C 0.17 1.13 6.66 22.49 0.15 1.28 16
6 O -0.31 -3.00 8.99 -73.36 -0.66 -3.66 16
7 C 0.04 0.04 5.22 71.24 0.37 0.41 16
8 C 0.52 3.08 7.91 87.66 0.69 3.78 16
9 O -0.57 -10.15 16.10 16.00 0.26 -9.89 16
10 N -0.69 1.23 5.26 -440.05 -2.32 -1.09 16
11 C 0.11 -0.07 4.32 45.52 0.20 0.12 16
12 H 0.09 0.39 7.46 -2.39 -0.02 0.37 16
13 C -0.12 0.80 7.39 31.12 0.23 1.03 16
14 C -0.10 0.44 3.88 -10.26 -0.04 0.40 16
15 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16
16 C 0.06 -0.14 4.58 71.98 0.33 0.19 16
17 O -0.33 -1.47 10.14 -92.39 -0.94 -2.40 16
18 C 0.11 0.58 6.69 22.50 0.15 0.73 16
19 C -0.22 -0.53 9.04 22.37 0.20 -0.33 16
20 C -0.09 -0.11 10.04 22.26 0.22 0.11 16
21 C -0.17 -0.22 10.04 22.28 0.22 0.00 16
22 C -0.09 -0.18 10.04 22.25 0.22 0.04 16
23 C -0.17 -0.82 9.99 22.36 0.22 -0.60 16
24 C -0.15 0.07 7.43 31.12 0.23 0.30 16
25 C -0.20 -0.97 5.27 -19.75 -0.10 -1.08 16
26 C -0.07 -0.47 2.37 71.24 0.17 -0.30 16
27 O -0.56 -4.72 12.88 -148.98 -1.92 -6.64 16
28 Si 0.80 0.77 29.91 68.60 2.05 2.83 16
29 C -0.03 0.03 8.65 22.24 0.19 0.23 16
30 C -0.24 0.39 9.04 22.38 0.20 0.59 16
31 H 0.07 -0.59 7.65 -2.38 -0.02 -0.61 16
32 H 0.07 -0.64 7.67 -2.39 -0.02 -0.66 16
33 H 0.12 -1.10 8.14 -2.38 -0.02 -1.12 16
34 H 0.15 -0.21 6.30 -2.91 -0.02 -0.23 16
35 H 0.12 -0.63 7.66 -2.39 -0.02 -0.65 16
36 H 0.12 -0.52 7.66 -2.39 -0.02 -0.54 16
37 H 0.42 -3.80 8.70 -92.71 -0.81 -4.61 16
38 H 0.11 -0.96 8.10 -2.39 -0.02 -0.98 16
39 H 0.10 -0.92 8.14 -2.39 -0.02 -0.94 16
40 H 0.07 -0.22 7.36 -2.39 -0.02 -0.24 16
41 H 0.08 -0.35 7.68 -2.39 -0.02 -0.37 16
42 H 0.14 -0.24 6.30 -2.91 -0.02 -0.26 16
43 H 0.14 -0.46 8.06 -2.91 -0.02 -0.48 16
44 H 0.14 -0.39 8.06 -2.91 -0.02 -0.42 16
45 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16
46 H 0.13 0.42 8.06 -2.91 -0.02 0.39 16
47 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16
48 H 0.09 -0.04 7.90 -2.39 -0.02 -0.06 16
49 H 0.08 1.00 7.83 -2.39 -0.02 0.98 16
50 H 0.39 -0.62 8.70 -74.06 -0.64 -1.27 16
51 H -0.28 -1.27 7.11 99.48 0.71 -0.56 16
52 H -0.30 -2.76 7.11 99.48 0.71 -2.05 16
53 H 0.17 -1.28 5.12 -2.91 -0.01 -1.29 16
54 H 0.16 -1.20 6.29 -2.91 -0.02 -1.21 16
Total: 0.00 -32.22 445.20 0.38 -31.84
By element:
Atomic # 1 Polarization: -17.13 SS G_CDS: -0.46 Total: -17.59 kcal
Atomic # 6 Polarization: 2.50 SS G_CDS: 5.33 Total: 7.83 kcal
Atomic # 7 Polarization: 1.23 SS G_CDS: -2.32 Total: -1.09 kcal
Atomic # 8 Polarization: -19.59 SS G_CDS: -4.23 Total: -23.82 kcal
Atomic # 14 Polarization: 0.77 SS G_CDS: 2.05 Total: 2.83 kcal
Total: -32.22 0.38 -31.84 kcal
The number of atoms in the molecule is 54
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534226_4974312.mol2 54
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -55.156 kcal
(2) G-P(sol) polarization free energy of solvation -32.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.67 seconds