Wall clock time and date at job start Sun Mar 7 2021 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00315 * 2 1 4 4 C 1.39143 * 120.07360 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07926 * 359.97438 * 4 3 2 6 6 C 1.42895 * 117.00349 * 179.72723 * 5 4 3 7 7 C 1.50701 * 109.46838 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00269 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99932 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08994 * 113.61814 * 270.88533 * 13 12 10 15 15 C 1.52998 * 113.68937 * 139.98701 * 13 12 10 16 16 O 1.42904 * 109.46578 * 87.46871 * 15 13 12 17 17 C 1.35905 * 116.99662 * 179.97438 * 16 15 13 18 18 C 1.38733 * 120.05949 * 359.72956 * 17 16 15 19 19 C 1.38143 * 119.94445 * 179.74055 * 18 17 16 20 20 C 1.38266 * 120.05393 * 0.51008 * 19 18 17 21 21 C 1.38256 * 120.11388 * 359.75872 * 20 19 18 22 22 C 1.38147 * 120.05673 * 359.97438 * 21 20 19 23 23 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 24 24 C 1.38570 * 119.85151 * 179.72684 * 4 3 2 25 25 C 1.38242 * 120.00289 * 0.27005 * 24 4 3 26 26 C 1.38253 * 120.14152 * 0.02562 * 25 24 4 27 27 C 1.50700 * 119.92668 * 179.97438 * 26 25 24 28 28 O 1.42902 * 109.47273 * 245.00419 * 27 26 25 29 29 Si 1.86306 * 109.46800 * 4.99986 * 27 26 25 30 30 C 1.38241 * 120.14989 * 0.02562 * 26 25 24 31 31 H 1.08990 * 109.47061 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.46991 * 300.00213 * 1 2 3 33 33 H 1.09000 * 109.46750 * 59.99973 * 1 2 3 34 34 H 1.08997 * 109.47351 * 60.00536 * 6 5 4 35 35 H 1.08994 * 109.47217 * 299.99473 * 6 5 4 36 36 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 37 37 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 38 38 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 39 39 H 1.08993 * 109.47595 * 207.46467 * 15 13 12 40 40 H 1.09002 * 109.47655 * 327.46970 * 15 13 12 41 41 H 1.08004 * 120.02480 * 359.97438 * 18 17 16 42 42 H 1.08002 * 119.96899 * 180.27129 * 19 18 17 43 43 H 1.08004 * 119.94043 * 179.74489 * 20 19 18 44 44 H 1.08004 * 119.97360 * 179.97438 * 21 20 19 45 45 H 1.07999 * 120.03135 * 179.97438 * 22 21 20 46 46 H 1.09000 * 113.61578 * 25.34726 * 23 10 9 47 47 H 1.09001 * 113.61682 * 156.17306 * 23 10 9 48 48 H 1.08007 * 119.99864 * 180.25785 * 24 4 3 49 49 H 1.07994 * 119.92885 * 180.02562 * 25 24 4 50 50 H 1.08995 * 109.47326 * 124.99968 * 27 26 25 51 51 H 0.96703 * 114.00197 * 59.99381 * 28 27 26 52 52 H 1.48494 * 110.00176 * 58.68499 * 29 27 26 53 53 H 1.48505 * 109.99911 * 180.02562 * 29 27 26 54 54 H 1.08000 * 120.00147 * 179.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1796 0.1476 0.0016 6 6 5.6003 0.3006 -0.0040 7 6 6.2518 -1.0583 -0.0025 8 8 5.5669 -2.0592 0.0023 9 7 7.5957 -1.1613 -0.0076 10 6 8.2290 -2.4824 -0.0056 11 1 7.5951 -3.2551 0.4294 12 6 8.8394 -2.8769 -1.3609 13 6 10.1345 -2.1966 -0.8869 14 1 10.1847 -1.1354 -1.1305 15 6 11.4050 -2.9559 -1.2741 16 8 11.8277 -2.5444 -2.5757 17 6 12.9505 -3.1270 -3.0726 18 6 13.6345 -4.0711 -2.3207 19 6 14.7725 -4.6658 -2.8303 20 6 15.2358 -4.3131 -4.0844 21 6 14.5591 -3.3684 -4.8335 22 6 13.4175 -2.7748 -4.3306 23 6 9.6630 -2.4771 0.5499 24 6 4.0603 2.5233 -0.0052 25 6 3.3030 3.6799 -0.0058 26 6 1.9225 3.6057 -0.0001 27 6 1.1017 4.8696 -0.0002 28 8 0.3696 4.9623 1.2235 29 14 2.2305 6.3430 -0.1617 30 6 1.2933 2.3748 0.0067 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 5.9098 0.8532 0.8831 35 1 5.9034 0.8474 -0.8968 36 1 8.1434 -0.3608 -0.0118 37 1 8.9370 -3.9537 -1.4988 38 1 8.3717 -2.3809 -2.2113 39 1 12.1919 -2.7400 -0.5515 40 1 11.2010 -4.0266 -1.2800 41 1 13.2754 -4.3437 -1.3392 42 1 15.3028 -5.4041 -2.2471 43 1 16.1280 -4.7761 -4.4793 44 1 14.9233 -3.0942 -5.8126 45 1 12.8895 -2.0366 -4.9159 46 1 9.8602 -1.6584 1.2418 47 1 9.9854 -3.4443 0.9356 48 1 5.1387 2.5839 -0.0090 49 1 3.7909 4.6433 -0.0107 50 1 0.4062 4.8511 -0.8392 51 1 0.9261 4.9834 2.0141 52 1 3.0206 6.2426 -1.4149 53 1 1.4332 7.5959 -0.1624 54 1 0.2147 2.3197 0.0115 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_60476.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:08 Heat of formation + Delta-G solvation = -85.220192 kcal Electronic energy + Delta-G solvation = -35695.993097 eV Core-core repulsion = 30760.078866 eV Total energy + Delta-G solvation = -4935.914232 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.181 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.87450 -41.46127 -40.91272 -39.87718 -39.10441 -38.81484 -38.07169 -36.91628 -34.64894 -32.10570 -31.98046 -31.48344 -31.09340 -29.90835 -28.71896 -28.38523 -26.74107 -26.20455 -24.58049 -23.67049 -23.32611 -22.66088 -22.49912 -21.87877 -20.36409 -19.79274 -19.19016 -18.53562 -18.41476 -17.93909 -17.55120 -17.38952 -17.09593 -16.92030 -16.80963 -16.71669 -16.67385 -16.10056 -15.91913 -15.78072 -15.65389 -15.49717 -15.33214 -15.03689 -14.92865 -14.60393 -14.34822 -14.30118 -14.07707 -13.78403 -13.64406 -13.53511 -13.50463 -13.42927 -13.11018 -12.63933 -12.54739 -12.50899 -12.18869 -12.13342 -12.09918 -12.04980 -11.98078 -11.76373 -11.71773 -11.61650 -11.19679 -11.03779 -10.43474 -10.17780 -9.97142 -9.80133 -9.17897 -8.92515 -4.97367 0.15762 0.27126 0.37391 0.47845 1.33344 1.41349 1.45366 1.67682 2.00173 2.19014 2.29813 2.54738 2.55498 2.83261 3.41096 3.48524 3.50139 3.51555 3.69488 3.76440 3.79894 3.85841 3.90061 3.90675 3.98174 4.03890 4.11233 4.13294 4.23290 4.27538 4.28846 4.29251 4.32964 4.35085 4.44122 4.49306 4.49653 4.56245 4.62721 4.64424 4.67300 4.71520 4.75234 4.82430 4.99524 4.99825 5.03976 5.06903 5.11608 5.13847 5.33941 5.36454 5.46904 5.52061 5.59081 5.60012 5.85045 5.95627 6.38968 6.45901 6.52844 6.78018 7.11918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.315 6.315 6 C 0.035 3.965 7 C 0.514 3.486 8 O -0.572 6.572 9 N -0.692 5.692 10 C 0.114 3.886 11 H 0.084 0.916 12 C -0.149 4.149 13 C -0.100 4.100 14 H 0.109 0.891 15 C 0.063 3.937 16 O -0.330 6.330 17 C 0.113 3.887 18 C -0.219 4.219 19 C -0.089 4.089 20 C -0.169 4.169 21 C -0.088 4.088 22 C -0.174 4.174 23 C -0.116 4.116 24 C -0.159 4.159 25 C -0.108 4.108 26 C -0.119 4.119 27 C -0.076 4.076 28 O -0.557 6.557 29 Si 0.787 3.213 30 C -0.153 4.153 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.422 0.578 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.146 0.854 45 H 0.131 0.869 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.177 0.823 49 H 0.161 0.839 50 H 0.103 0.897 51 H 0.396 0.604 52 H -0.281 1.281 53 H -0.303 1.303 54 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 4.267 3.529 9.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.228 6.228 6 C -0.043 4.043 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.008 3.992 11 H 0.102 0.898 12 C -0.188 4.188 13 C -0.119 4.119 14 H 0.127 0.873 15 C -0.011 4.011 16 O -0.244 6.244 17 C 0.067 3.933 18 C -0.237 4.237 19 C -0.107 4.107 20 C -0.188 4.188 21 C -0.105 4.105 22 C -0.192 4.192 23 C -0.154 4.154 24 C -0.177 4.177 25 C -0.126 4.126 26 C -0.120 4.120 27 C -0.185 4.185 28 O -0.365 6.365 29 Si 0.692 3.308 30 C -0.172 4.172 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.260 0.740 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.149 0.851 46 H 0.118 0.882 47 H 0.129 0.871 48 H 0.195 0.805 49 H 0.178 0.822 50 H 0.120 0.880 51 H 0.246 0.754 52 H -0.207 1.207 53 H -0.231 1.231 54 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.563 3.979 2.589 8.100 hybrid contribution -0.701 -0.426 -0.482 0.952 sum 5.861 3.554 2.107 7.171 Atomic orbital electron populations 1.23280 0.76833 1.05209 1.02061 1.86189 1.22985 1.26679 1.89111 1.18677 0.89952 0.85578 1.02727 1.18592 0.88162 0.86566 1.02775 1.86220 1.18223 1.29094 1.89313 1.22774 0.79350 0.95013 1.07140 1.20596 0.82955 0.90907 0.75465 1.90775 1.64101 1.40236 1.49929 1.45329 1.05071 1.09630 1.74569 1.21822 0.94478 0.85272 0.97590 0.89794 1.23530 0.96352 1.01570 0.97322 1.22608 0.91328 1.00970 0.96973 0.87303 1.23037 0.96968 0.99312 0.81806 1.86050 1.40098 1.63211 1.35060 1.19246 0.86919 0.93308 0.93791 1.21511 0.99272 1.00937 1.01998 1.21319 0.95098 0.98449 0.95843 1.21422 1.01908 0.99874 0.95547 1.21294 0.93658 0.95179 1.00409 1.20706 0.99355 1.04380 0.94801 1.23271 0.91737 1.05176 0.95185 1.21402 1.02335 0.89279 1.04714 1.21008 0.92210 0.98992 1.00344 1.20205 0.94558 0.94790 1.02460 1.25267 1.01067 1.02291 0.89923 1.86468 1.37553 1.96620 1.15895 0.93682 0.79250 0.72518 0.85328 1.21014 1.00468 0.90625 1.05068 0.87065 0.91656 0.91946 0.84991 0.85693 0.73977 0.89034 0.92120 0.90470 0.91347 0.84018 0.83904 0.84174 0.83627 0.85070 0.88156 0.87125 0.80539 0.82158 0.87966 0.75435 1.20732 1.23098 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.34 -3.90 10.28 -79.69 -0.82 -4.72 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.48 6.70 22.57 0.15 0.63 16 5 O -0.31 -2.73 9.45 -67.09 -0.63 -3.36 16 6 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 7 C 0.51 1.86 7.91 87.66 0.69 2.55 16 8 O -0.57 -9.34 16.12 16.01 0.26 -9.08 16 9 N -0.69 2.93 5.27 -440.02 -2.32 0.61 16 10 C 0.11 -0.27 4.30 45.52 0.20 -0.08 16 11 H 0.08 0.25 7.50 -2.39 -0.02 0.24 16 12 C -0.15 0.26 7.44 31.12 0.23 0.49 16 13 C -0.10 0.59 3.89 -10.27 -0.04 0.55 16 14 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 15 C 0.06 -0.21 4.58 71.98 0.33 0.12 16 16 O -0.33 -1.15 10.14 -92.48 -0.94 -2.08 16 17 C 0.11 0.50 6.69 22.51 0.15 0.65 16 18 C -0.22 -0.37 9.04 22.37 0.20 -0.17 16 19 C -0.09 -0.06 10.04 22.25 0.22 0.16 16 20 C -0.17 -0.14 10.04 22.28 0.22 0.08 16 21 C -0.09 -0.14 10.04 22.25 0.22 0.08 16 22 C -0.17 -0.71 9.99 22.37 0.22 -0.48 16 23 C -0.12 0.99 7.38 31.12 0.23 1.22 16 24 C -0.16 0.44 9.04 22.35 0.20 0.64 16 25 C -0.11 0.38 8.66 22.27 0.19 0.57 16 26 C -0.12 -0.03 5.35 -19.86 -0.11 -0.14 16 27 C -0.08 0.08 2.80 71.24 0.20 0.28 16 28 O -0.56 0.04 12.83 -148.98 -1.91 -1.87 16 29 Si 0.79 -3.18 29.80 68.60 2.04 -1.13 16 30 C -0.15 -0.65 8.67 22.35 0.19 -0.45 16 31 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.06 0.04 7.65 -2.38 -0.02 0.02 16 33 H 0.06 0.05 7.68 -2.39 -0.02 0.03 16 34 H 0.13 -1.37 7.66 -2.39 -0.02 -1.38 16 35 H 0.13 -1.14 7.66 -2.39 -0.02 -1.16 16 36 H 0.42 -5.12 8.71 -92.71 -0.81 -5.93 16 37 H 0.09 -0.12 7.90 -2.39 -0.02 -0.14 16 38 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 39 H 0.08 -0.45 7.65 -2.39 -0.02 -0.46 16 40 H 0.07 -0.28 7.38 -2.39 -0.02 -0.29 16 41 H 0.14 -0.36 6.30 -2.91 -0.02 -0.38 16 42 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 43 H 0.14 -0.44 8.06 -2.91 -0.02 -0.47 16 44 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 45 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 46 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 47 H 0.11 -1.10 8.10 -2.39 -0.02 -1.12 16 48 H 0.18 -1.99 6.30 -2.91 -0.02 -2.01 16 49 H 0.16 -1.56 4.89 -2.91 -0.01 -1.58 16 50 H 0.10 0.06 7.96 -2.39 -0.02 0.05 16 51 H 0.40 -3.28 8.70 -74.06 -0.64 -3.93 16 52 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 53 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 54 H 0.14 0.41 6.30 -2.91 -0.02 0.40 16 Total: 0.00 -33.74 445.54 0.57 -33.16 By element: Atomic # 1 Polarization: -20.01 SS G_CDS: -0.46 Total: -20.47 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.36 Total: 8.95 kcal Atomic # 7 Polarization: 2.93 SS G_CDS: -2.32 Total: 0.61 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -4.04 Total: -21.12 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.04 Total: -1.13 kcal Total: -33.74 0.57 -33.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_60476.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.059 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds