Wall clock time and date at job start Sun Mar 7 2021 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35960 * 116.99976 * 2 1 4 4 C 1.39452 * 120.11775 * 180.02562 * 3 2 1 5 5 O 1.34769 * 133.24495 * 0.02746 * 4 3 2 6 6 C 1.34929 * 110.84575 * 179.97438 * 5 4 3 7 7 C 1.46990 * 125.14047 * 180.02562 * 6 5 4 8 8 O 1.21658 * 120.00041 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00241 * 0.02562 * 7 6 5 10 10 C 1.46502 * 120.00199 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.84412 * 334.66455 * 10 9 7 12 12 C 1.53781 * 113.61590 * 105.86174 * 10 9 7 13 13 C 1.54050 * 86.98397 * 89.16098 * 12 10 9 14 14 H 1.09004 * 113.68905 * 270.86865 * 13 12 10 15 15 C 1.53004 * 113.61601 * 139.98016 * 13 12 10 16 16 O 1.42898 * 109.47282 * 87.50350 * 15 13 12 17 17 C 1.35895 * 117.00231 * 179.97438 * 16 15 13 18 18 C 1.38737 * 120.05458 * 359.72863 * 17 16 15 19 19 C 1.38147 * 119.94112 * 179.69359 * 18 17 16 20 20 C 1.38263 * 120.06008 * 0.60211 * 19 18 17 21 21 C 1.38264 * 120.10803 * 359.67189 * 20 19 18 22 22 C 1.38140 * 120.05681 * 0.02826 * 21 20 19 23 23 C 1.53777 * 87.07723 * 25.43303 * 13 12 10 24 24 C 1.35806 * 109.71962 * 0.02562 * 6 5 4 25 25 C 1.40615 * 119.13578 * 180.02562 * 4 3 2 26 26 C 1.39780 * 120.11883 * 0.02562 * 25 4 3 27 27 C 1.50693 * 120.09253 * 180.02562 * 26 25 4 28 28 O 1.42905 * 109.47034 * 285.00181 * 27 26 25 29 29 Si 1.86301 * 109.47070 * 165.00400 * 27 26 25 30 30 C 1.36631 * 119.80939 * 0.02562 * 26 25 4 31 31 C 1.38257 * 120.12199 * 359.73142 * 3 2 1 32 32 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46938 * 59.99679 * 1 2 3 34 34 H 1.09004 * 109.46926 * 299.99800 * 1 2 3 35 35 H 0.97000 * 119.99940 * 359.97438 * 9 7 6 36 36 H 1.09000 * 113.61567 * 203.66377 * 12 10 9 37 37 H 1.08999 * 113.61547 * 334.56752 * 12 10 9 38 38 H 1.09003 * 109.46838 * 207.50069 * 15 13 12 39 39 H 1.09002 * 109.47160 * 327.50421 * 15 13 12 40 40 H 1.08000 * 120.02744 * 359.97438 * 18 17 16 41 41 H 1.08007 * 119.96872 * 180.32214 * 19 18 17 42 42 H 1.07998 * 119.94730 * 179.70126 * 20 19 18 43 43 H 1.08003 * 119.97409 * 180.02562 * 21 20 19 44 44 H 1.08009 * 120.02974 * 179.97438 * 22 21 20 45 45 H 1.09006 * 113.61265 * 220.02069 * 23 13 12 46 46 H 1.08994 * 113.61690 * 89.11872 * 23 13 12 47 47 H 1.07996 * 126.95809 * 180.02562 * 24 6 5 48 48 H 1.08999 * 109.47291 * 45.00222 * 27 26 25 49 49 H 0.96705 * 113.99749 * 180.02562 * 28 27 26 50 50 H 1.48494 * 109.99790 * 298.67696 * 29 27 26 51 51 H 1.48500 * 110.00038 * 59.99797 * 29 27 26 52 52 H 1.08000 * 119.74536 * 180.02562 * 30 26 25 53 53 H 1.07991 * 119.66522 * 359.96795 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4141 0.3572 -0.0016 6 6 5.6318 0.9385 -0.0023 7 6 6.9131 0.2182 -0.0040 8 8 7.9596 0.8385 -0.0040 9 7 6.9286 -1.1295 -0.0056 10 6 8.2057 -1.8474 -0.0067 11 1 9.0193 -1.2628 -0.4361 12 6 8.5543 -2.4865 1.3478 13 6 7.7916 -3.7342 0.8634 14 1 6.7281 -3.7173 1.1018 15 6 8.4659 -5.0526 1.2483 16 8 8.0215 -5.4539 2.5458 17 6 8.5283 -6.6139 3.0401 18 6 9.4305 -7.3537 2.2894 19 6 9.9491 -8.5293 2.7968 20 6 9.5603 -8.9752 4.0465 21 6 8.6570 -8.2427 4.7942 22 6 8.1402 -7.0633 4.2940 23 6 8.1092 -3.2752 -0.5695 24 6 5.4946 2.2896 -0.0011 25 6 4.0555 2.5509 0.0000 26 6 3.2767 3.7116 0.0016 27 6 3.9383 5.0655 0.0017 28 8 4.4623 5.3396 1.3026 29 14 2.6860 6.3686 -0.4506 30 6 1.9138 3.6150 0.0032 31 6 1.2957 2.3725 -0.0056 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 0.5138 0.8900 35 1 6.0942 -1.6241 -0.0052 36 1 9.6219 -2.6550 1.4893 37 1 8.0869 -1.9900 2.1981 38 1 8.2036 -5.8208 0.5207 39 1 9.5474 -4.9176 1.2604 40 1 9.7305 -7.0085 1.3110 41 1 10.6554 -9.1029 2.2149 42 1 9.9632 -9.8970 4.4394 43 1 8.3551 -8.5929 5.7703 44 1 7.4343 -6.4917 4.8783 45 1 7.2825 -3.4151 -1.2661 46 1 9.0553 -3.6589 -0.9513 47 1 6.2875 3.0228 -0.0017 48 1 4.7498 5.0734 -0.7260 49 1 4.9031 6.1972 1.3764 50 1 2.1569 6.1130 -1.8143 51 1 1.5743 6.3681 0.5340 52 1 1.3130 4.5125 0.0041 53 1 0.2175 2.3120 -0.0105 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_6672420.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:25 Heat of formation + Delta-G solvation = -40.235484 kcal Electronic energy + Delta-G solvation = -37457.703346 eV Core-core repulsion = 32422.825136 eV Total energy + Delta-G solvation = -5034.878210 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.165 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.89438 -41.61782 -41.02693 -40.67986 -39.54284 -39.06420 -38.13388 -37.13472 -34.79718 -33.79314 -32.17293 -32.02396 -31.33372 -30.94367 -29.26686 -28.57757 -26.79933 -26.39746 -25.58088 -24.23863 -24.18086 -23.36688 -22.58360 -22.20014 -21.80312 -20.42034 -19.98517 -19.20210 -19.03312 -18.56730 -18.44901 -17.85794 -17.49329 -17.17859 -17.07812 -16.93014 -16.76136 -16.70710 -16.40852 -16.07871 -15.93237 -15.48194 -15.46897 -15.18717 -15.04086 -14.76154 -14.60452 -14.36501 -14.34494 -14.18961 -14.10534 -14.02420 -13.58760 -13.52483 -13.47419 -13.23180 -13.16859 -12.62071 -12.52619 -12.45565 -12.20051 -12.15846 -12.09430 -11.93808 -11.76908 -11.74981 -11.62188 -11.24276 -11.14788 -10.39453 -10.31114 -9.99162 -9.98627 -9.19797 -9.16401 -4.93280 -0.80996 -0.10132 0.35799 0.46134 0.47881 1.04240 1.27713 1.66327 1.75686 1.78766 1.93969 1.98778 2.16462 2.20309 2.81629 3.02971 3.28678 3.32999 3.40192 3.45800 3.60899 3.66164 3.69465 3.74227 3.83056 3.88329 3.94616 3.95806 4.01620 4.16773 4.19464 4.26463 4.28943 4.29191 4.30200 4.31914 4.39121 4.47848 4.52650 4.57796 4.63641 4.68077 4.68862 4.69737 4.71745 4.74996 4.87412 4.93246 4.96622 5.01296 5.04388 5.05280 5.15722 5.32285 5.36724 5.45350 5.47001 5.58271 5.83598 6.05148 6.16512 6.44230 6.72212 6.88791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.140 3.860 4 C 0.024 3.976 5 O -0.179 6.179 6 C -0.034 4.034 7 C 0.608 3.392 8 O -0.539 6.539 9 N -0.689 5.689 10 C 0.111 3.889 11 H 0.104 0.896 12 C -0.145 4.145 13 C -0.107 4.107 14 H 0.096 0.904 15 C 0.066 3.934 16 O -0.333 6.333 17 C 0.112 3.888 18 C -0.218 4.218 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.087 4.087 22 C -0.175 4.175 23 C -0.116 4.116 24 C -0.104 4.104 25 C -0.098 4.098 26 C -0.069 4.069 27 C -0.086 4.086 28 O -0.563 6.563 29 Si 0.783 3.217 30 C -0.106 4.106 31 C -0.170 4.170 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.129 0.871 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.183 0.817 48 H 0.087 0.913 49 H 0.403 0.597 50 H -0.285 1.285 51 H -0.281 1.281 52 H 0.145 0.855 53 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 0.532 -2.966 3.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.094 3.906 4 C -0.024 4.024 5 O -0.081 6.081 6 C -0.084 4.084 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.338 5.338 10 C 0.006 3.994 11 H 0.122 0.878 12 C -0.183 4.183 13 C -0.126 4.126 14 H 0.114 0.886 15 C -0.009 4.009 16 O -0.247 6.247 17 C 0.066 3.934 18 C -0.236 4.236 19 C -0.106 4.106 20 C -0.187 4.187 21 C -0.105 4.105 22 C -0.194 4.194 23 C -0.154 4.154 24 C -0.125 4.125 25 C -0.099 4.099 26 C -0.069 4.069 27 C -0.195 4.195 28 O -0.373 6.373 29 Si 0.687 3.313 30 C -0.124 4.124 31 C -0.188 4.188 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.147 0.853 45 H 0.110 0.890 46 H 0.141 0.859 47 H 0.200 0.800 48 H 0.105 0.895 49 H 0.255 0.745 50 H -0.211 1.211 51 H -0.208 1.208 52 H 0.162 0.838 53 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.471 0.158 -2.999 3.889 hybrid contribution -0.409 -0.709 0.115 0.826 sum -2.880 -0.550 -2.884 4.113 Atomic orbital electron populations 1.23508 0.75287 1.06266 1.02987 1.86148 1.24333 1.25377 1.88367 1.17875 0.86266 0.86651 0.99850 1.19153 0.88189 0.87213 1.07827 1.84013 1.12740 1.34864 1.76435 1.22015 0.83957 0.92820 1.09580 1.16572 0.84864 0.82680 0.76564 1.90892 1.31109 1.68132 1.51608 1.45557 1.10751 1.04845 1.72691 1.22028 0.85651 0.93496 0.98195 0.87802 1.23586 1.01875 0.95986 0.96866 1.22666 1.00655 0.91975 0.97290 0.88607 1.23019 0.99413 0.96568 0.81891 1.86054 1.66167 1.37050 1.35427 1.19260 0.94034 0.86222 0.93843 1.21515 1.01759 0.98329 1.02013 1.21329 0.98318 0.95125 0.95830 1.21428 0.99941 1.01700 0.95588 1.21289 0.95592 0.93220 1.00402 1.20702 1.04644 0.99107 0.94942 1.23295 1.05179 0.91932 0.95010 1.22883 0.94838 0.94547 1.00203 1.19619 0.92991 0.92445 1.04847 1.18887 0.92805 0.93361 1.01856 1.24977 1.06424 0.98744 0.89346 1.86472 1.78310 1.43833 1.28682 0.94027 0.76572 0.84539 0.76190 1.20691 0.93502 0.98267 0.99895 1.21275 1.01773 0.89612 1.06174 0.86072 0.90751 0.90976 0.74697 0.87658 0.92290 0.90591 0.90587 0.83898 0.83743 0.84048 0.83627 0.85325 0.89039 0.85926 0.79971 0.89539 0.74540 1.21144 1.20816 0.83814 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.33 -1.82 10.50 -93.10 -0.98 -2.80 16 3 C 0.14 1.01 6.70 22.57 0.15 1.17 16 4 C 0.02 0.26 7.35 23.14 0.17 0.43 16 5 O -0.18 -1.83 10.28 -13.35 -0.14 -1.97 16 6 C -0.03 -0.32 7.07 24.00 0.17 -0.15 16 7 C 0.61 5.23 7.80 86.54 0.67 5.90 16 8 O -0.54 -7.47 16.44 -4.22 -0.07 -7.54 16 9 N -0.69 -1.81 5.26 -443.71 -2.33 -4.14 16 10 C 0.11 -0.03 4.30 45.52 0.20 0.17 16 11 H 0.10 0.18 7.50 -2.39 -0.02 0.16 16 12 C -0.14 0.01 7.45 31.21 0.23 0.25 16 13 C -0.11 0.26 3.90 -10.18 -0.04 0.22 16 14 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 15 C 0.07 -0.09 4.58 71.98 0.33 0.24 16 16 O -0.33 -1.93 10.14 -92.37 -0.94 -2.87 16 17 C 0.11 0.68 6.69 22.51 0.15 0.83 16 18 C -0.22 -0.60 9.04 22.37 0.20 -0.39 16 19 C -0.09 -0.13 10.04 22.25 0.22 0.09 16 20 C -0.17 -0.28 10.04 22.28 0.22 -0.06 16 21 C -0.09 -0.24 10.04 22.25 0.22 -0.02 16 22 C -0.18 -1.01 9.99 22.37 0.22 -0.79 16 23 C -0.12 0.67 7.38 31.12 0.23 0.90 16 24 C -0.10 -0.94 10.68 23.79 0.25 -0.69 16 25 C -0.10 -0.95 6.16 -20.24 -0.12 -1.08 16 26 C -0.07 -0.47 5.30 -19.87 -0.11 -0.58 16 27 C -0.09 -0.08 2.70 71.23 0.19 0.11 16 28 O -0.56 -0.82 12.86 -148.98 -1.92 -2.74 16 29 Si 0.78 -2.37 30.20 68.60 2.07 -0.30 16 30 C -0.11 -0.50 8.62 22.02 0.19 -0.31 16 31 C -0.17 -0.52 9.03 22.40 0.20 -0.32 16 32 H 0.12 -0.86 8.14 -2.39 -0.02 -0.88 16 33 H 0.07 -0.50 7.65 -2.39 -0.02 -0.52 16 34 H 0.07 -0.45 7.67 -2.38 -0.02 -0.46 16 35 H 0.42 -0.07 8.42 -92.71 -0.78 -0.85 16 36 H 0.11 -0.20 7.90 -2.39 -0.02 -0.22 16 37 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.08 -0.27 7.65 -2.39 -0.02 -0.29 16 39 H 0.08 -0.26 7.38 -2.39 -0.02 -0.28 16 40 H 0.14 -0.24 6.30 -2.91 -0.02 -0.26 16 41 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 42 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 43 H 0.15 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.13 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.09 -0.63 8.14 -2.38 -0.02 -0.64 16 46 H 0.12 -1.13 8.10 -2.39 -0.02 -1.14 16 47 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 48 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 49 H 0.40 -3.77 8.74 -74.05 -0.65 -4.42 16 50 H -0.28 -0.61 7.11 99.48 0.71 0.10 16 51 H -0.28 -0.62 6.75 99.48 0.67 0.06 16 52 H 0.14 0.26 4.85 -2.91 -0.01 0.24 16 53 H 0.18 -0.70 6.26 -2.92 -0.02 -0.71 16 Total: 0.00 -25.36 443.43 0.34 -25.02 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: -0.44 Total: -9.65 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.08 Total: 6.99 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -2.33 Total: -4.14 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -4.04 Total: -17.91 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.07 Total: -0.30 kcal Total: -25.36 0.34 -25.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_6672420.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.218 kcal (2) G-P(sol) polarization free energy of solvation -25.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds