Wall clock time and date at job start Sun Mar 7 2021 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50699 * 109.47188 * 120.00199 * 2 1 3 5 5 C 1.32773 * 124.71541 * 64.99705 * 4 2 1 6 6 C 1.44421 * 113.08669 * 179.97438 * 5 4 2 7 7 C 1.47189 * 123.45847 * 180.02562 * 6 5 4 8 8 O 1.21630 * 120.00329 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99833 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.84752 * 334.66062 * 10 9 7 12 12 C 1.53778 * 113.61366 * 105.86222 * 10 9 7 13 13 C 1.54042 * 86.98816 * 89.15958 * 12 10 9 14 14 H 1.09003 * 113.61528 * 270.88116 * 13 12 10 15 15 C 1.53008 * 113.69893 * 139.98820 * 13 12 10 16 16 O 1.42901 * 109.46978 * 87.46458 * 15 13 12 17 17 C 1.35899 * 116.99551 * 179.97438 * 16 15 13 18 18 C 1.38732 * 120.06123 * 359.73089 * 17 16 15 19 19 C 1.38143 * 119.94793 * 179.74270 * 18 17 16 20 20 C 1.38263 * 120.05340 * 0.50565 * 19 18 17 21 21 C 1.38270 * 120.11257 * 359.76999 * 20 19 18 22 22 C 1.38143 * 120.05338 * 359.97412 * 21 20 19 23 23 C 1.53777 * 87.07924 * 25.43013 * 13 12 10 24 24 C 1.36012 * 113.07895 * 0.02562 * 6 5 4 25 25 S 1.70449 * 110.81318 * 359.72333 * 24 6 5 26 26 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 27 27 H 1.09006 * 109.47099 * 239.99662 * 2 1 3 28 28 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 29 29 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 30 30 H 1.08004 * 123.45405 * 359.97438 * 5 4 2 31 31 H 0.97000 * 119.99707 * 359.97438 * 9 7 6 32 32 H 1.09008 * 113.61349 * 203.66288 * 12 10 9 33 33 H 1.08994 * 113.61795 * 334.56085 * 12 10 9 34 34 H 1.08995 * 109.47072 * 207.46678 * 15 13 12 35 35 H 1.09003 * 109.46511 * 327.46666 * 15 13 12 36 36 H 1.08011 * 120.02140 * 359.97438 * 18 17 16 37 37 H 1.07997 * 119.97652 * 180.27662 * 19 18 17 38 38 H 1.07996 * 119.94651 * 179.74492 * 20 19 18 39 39 H 1.07999 * 119.97571 * 179.97438 * 21 20 19 40 40 H 1.08009 * 120.02631 * 179.97438 * 22 21 20 41 41 H 1.09000 * 113.61412 * 220.02407 * 23 13 12 42 42 H 1.08997 * 113.61634 * 89.11734 * 23 13 12 43 43 H 1.07994 * 124.59227 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.7484 -2.0004 1.4864 6 6 2.3365 -2.4184 2.7375 7 6 2.2704 -3.7988 3.2441 8 8 1.6982 -4.6566 2.5991 9 7 2.8441 -4.1122 4.4228 10 6 2.7788 -5.4862 4.9268 11 1 1.9230 -6.0389 4.5393 12 6 4.1090 -6.2489 4.8102 13 6 4.4544 -5.6967 6.2061 14 1 4.9611 -4.7319 6.1809 15 6 5.1536 -6.7114 7.1132 16 8 6.5643 -6.6546 6.8927 17 6 7.3376 -7.4985 7.6253 18 6 6.7513 -8.3594 8.5417 19 6 7.5391 -9.2200 9.2813 20 6 8.9119 -9.2164 9.1165 21 6 9.4993 -8.3554 8.2080 22 6 8.7153 -7.4966 7.4622 23 6 2.9402 -5.5909 6.4525 24 6 2.9576 -1.4055 3.3994 25 16 2.8456 0.0507 2.5207 26 1 -0.3932 0.4418 0.7651 27 1 1.7923 -0.5139 -0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5881 2.4585 1.2242 30 1 1.2147 -2.6685 0.8266 31 1 3.3007 -3.4281 4.9370 32 1 3.9905 -7.3323 4.7863 33 1 4.7584 -5.8757 4.0184 34 1 4.9389 -6.4754 8.1554 35 1 4.7901 -7.7134 6.8851 36 1 5.6793 -8.3594 8.6739 37 1 7.0827 -9.8935 9.9916 38 1 9.5265 -9.8870 9.6987 39 1 10.5718 -8.3542 8.0814 40 1 9.1746 -6.8239 6.7529 41 1 2.6467 -4.6867 6.9858 42 1 2.5027 -6.4946 6.8768 43 1 3.4577 -1.5106 4.3508 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534226_6894386.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:35 Heat of formation + Delta-G solvation = -16.798512 kcal Electronic energy + Delta-G solvation = -26051.775957 eV Core-core repulsion = 22156.420580 eV Total energy + Delta-G solvation = -3895.355376 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.107 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60393 -40.93493 -39.78364 -38.74658 -38.07913 -37.13854 -34.58056 -32.07337 -31.79577 -30.98123 -29.16663 -27.00186 -26.88798 -25.97000 -24.33222 -23.34393 -22.60118 -22.24767 -20.64072 -20.41775 -19.22031 -18.94562 -18.18731 -17.71675 -17.35785 -16.94192 -16.82256 -16.68604 -16.44156 -16.04414 -15.78893 -15.54506 -15.39205 -15.10053 -14.85647 -14.40903 -14.34654 -14.14587 -14.06696 -13.79234 -13.61643 -13.56401 -13.47629 -13.12711 -12.71208 -12.52926 -12.42254 -12.21112 -12.10029 -11.84986 -11.78309 -11.67808 -11.30215 -10.95769 -10.75924 -10.17812 -10.04515 -9.94249 -9.55185 -9.14252 -5.13872 -0.40756 0.30013 0.40169 0.51997 0.64680 0.87161 1.14917 1.47793 1.84036 2.00814 2.13343 2.32017 2.86532 3.22030 3.27086 3.36667 3.49967 3.65681 3.67815 3.79430 3.88281 3.91791 3.93246 4.11489 4.20568 4.23583 4.25189 4.28468 4.43351 4.46985 4.52179 4.54323 4.57040 4.66727 4.68983 4.73201 4.89757 4.94562 4.98795 5.04597 5.06848 5.18617 5.35950 5.47807 5.49176 5.62111 5.83400 6.27022 6.39676 6.46343 7.17289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.522 6.522 2 C -0.033 4.033 3 Si 0.649 3.351 4 C -0.242 4.242 5 C -0.052 4.052 6 C -0.156 4.156 7 C 0.581 3.419 8 O -0.529 6.529 9 N -0.710 5.710 10 C 0.122 3.878 11 H 0.108 0.892 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.101 0.899 15 C 0.069 3.931 16 O -0.313 6.313 17 C 0.129 3.871 18 C -0.211 4.211 19 C -0.080 4.080 20 C -0.159 4.159 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.135 4.135 24 C -0.206 4.206 25 S 0.199 5.801 26 H 0.378 0.622 27 H 0.128 0.872 28 H -0.233 1.233 29 H -0.238 1.238 30 H 0.157 0.843 31 H 0.400 0.600 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 2.447 3.933 5.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.329 6.329 2 C -0.145 4.145 3 Si 0.548 3.452 4 C -0.358 4.358 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.367 3.633 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.016 3.984 11 H 0.126 0.874 12 C -0.183 4.183 13 C -0.129 4.129 14 H 0.119 0.881 15 C -0.006 4.006 16 O -0.227 6.227 17 C 0.084 3.916 18 C -0.229 4.229 19 C -0.098 4.098 20 C -0.178 4.178 21 C -0.098 4.098 22 C -0.172 4.172 23 C -0.173 4.173 24 C -0.344 4.344 25 S 0.465 5.535 26 H 0.225 0.775 27 H 0.146 0.854 28 H -0.157 1.157 29 H -0.162 1.162 30 H 0.174 0.826 31 H 0.235 0.765 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.099 0.901 42 H 0.119 0.881 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.929 3.985 3.011 5.789 hybrid contribution -1.307 -1.557 0.935 2.238 sum 1.622 2.428 3.946 4.908 Atomic orbital electron populations 1.86651 1.17153 1.79874 1.49194 1.24411 0.83887 1.10086 0.96150 0.95260 0.91830 0.74954 0.83165 1.24749 1.09574 0.98519 1.02990 1.21060 0.97693 0.94426 0.94974 1.20232 1.05802 0.93910 0.97431 1.17604 0.78030 0.87061 0.80576 1.90828 1.42941 1.49669 1.57091 1.45499 1.57683 1.10879 1.22061 1.21799 0.99518 0.82887 0.94173 0.87380 1.23561 0.97058 1.00845 0.96807 1.22695 0.94918 0.99520 0.95746 0.88075 1.22853 0.78450 0.99671 0.99649 1.86075 1.18660 1.57369 1.60593 1.19030 0.91059 0.90249 0.91272 1.21273 1.00516 1.00464 1.00692 1.20994 0.93811 0.97203 0.97837 1.21122 0.94987 1.01053 1.00598 1.21027 0.99873 0.94286 0.94644 1.20488 0.90552 1.02768 1.03418 1.23332 0.94451 1.03845 0.95722 1.25800 1.04901 0.98616 1.05123 1.83166 1.50033 1.09146 1.11105 0.77456 0.85407 1.15653 1.16240 0.82559 0.76543 0.88741 0.90457 0.91760 0.91614 0.85567 0.85729 0.85787 0.85246 0.85203 0.90129 0.88081 0.81168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.49 12.88 -35.23 -0.45 -0.94 16 2 C -0.03 0.02 2.94 36.01 0.11 0.13 16 3 Si 0.65 -1.03 30.92 -169.99 -5.26 -6.28 16 4 C -0.24 0.05 5.66 -36.18 -0.20 -0.15 16 5 C -0.05 -0.08 9.95 -39.02 -0.39 -0.47 16 6 C -0.16 -0.16 5.98 -104.63 -0.63 -0.78 16 7 C 0.58 1.47 7.79 -12.62 -0.10 1.37 16 8 O -0.53 -3.46 16.41 5.25 0.09 -3.37 16 9 N -0.71 0.46 5.23 -54.16 -0.28 0.17 16 10 C 0.12 -0.10 4.30 -67.12 -0.29 -0.38 16 11 H 0.11 0.10 7.50 -51.93 -0.39 -0.29 16 12 C -0.14 0.13 7.45 -25.78 -0.19 -0.07 16 13 C -0.11 0.23 3.90 -89.67 -0.35 -0.12 16 14 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 15 C 0.07 -0.08 4.58 37.16 0.17 0.09 16 16 O -0.31 -0.56 10.14 -19.42 -0.20 -0.76 16 17 C 0.13 0.28 6.69 -39.22 -0.26 0.02 16 18 C -0.21 -0.23 9.04 -39.43 -0.36 -0.59 16 19 C -0.08 -0.06 10.04 -39.61 -0.40 -0.46 16 20 C -0.16 -0.11 10.04 -39.56 -0.40 -0.51 16 21 C -0.08 -0.07 10.04 -39.60 -0.40 -0.46 16 22 C -0.15 -0.27 9.99 -39.43 -0.39 -0.67 16 23 C -0.14 0.41 7.38 -25.92 -0.19 0.22 16 24 C -0.21 0.34 10.38 29.93 0.31 0.65 16 25 S 0.20 -0.37 20.20 -107.50 -2.17 -2.54 16 26 H 0.38 -0.77 8.70 45.56 0.40 -0.38 16 27 H 0.13 -0.17 7.96 -51.93 -0.41 -0.58 16 28 H -0.23 -0.31 7.11 56.52 0.40 0.09 16 29 H -0.24 0.04 7.11 56.52 0.40 0.44 16 30 H 0.16 0.39 8.06 -52.48 -0.42 -0.03 16 31 H 0.40 -1.31 7.20 -40.82 -0.29 -1.61 16 32 H 0.09 -0.11 7.91 -51.92 -0.41 -0.52 16 33 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.06 -0.12 7.65 -51.93 -0.40 -0.52 16 35 H 0.07 -0.11 7.39 -51.93 -0.38 -0.49 16 36 H 0.13 -0.09 6.30 -52.48 -0.33 -0.42 16 37 H 0.12 -0.15 8.06 -52.49 -0.42 -0.57 16 38 H 0.12 -0.13 8.06 -52.49 -0.42 -0.56 16 39 H 0.13 -0.16 8.06 -52.49 -0.42 -0.59 16 40 H 0.13 0.10 8.06 -52.48 -0.42 -0.33 16 41 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 42 H 0.10 -0.39 8.10 -51.93 -0.42 -0.81 16 43 H 0.17 -0.78 7.01 -52.49 -0.37 -1.15 16 LS Contribution 376.57 15.07 5.67 5.67 Total: 0.00 -8.14 376.57 -12.15 -20.29 By element: Atomic # 1 Polarization: -4.47 SS G_CDS: -5.59 Total: -10.06 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.96 Total: -2.17 kcal Atomic # 7 Polarization: 0.46 SS G_CDS: -0.28 Total: 0.17 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.56 Total: -5.07 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.26 Total: -6.28 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.17 Total: -2.54 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -8.14 -12.15 -20.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_6894386.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.487 kcal (2) G-P(sol) polarization free energy of solvation -8.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds