Wall clock time and date at job start Sun Mar 7 2021 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37933 * 120.07026 * 2 1 4 4 C 1.38387 * 120.13924 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.84945 * 180.02562 * 4 3 2 6 6 C 1.38337 * 120.29659 * 359.97438 * 4 3 2 7 7 C 1.50692 * 119.92733 * 180.02562 * 6 4 3 8 8 O 1.42907 * 109.46928 * 284.99273 * 7 6 4 9 9 Si 1.86306 * 109.47134 * 164.99925 * 7 6 4 10 10 C 1.37978 * 120.14251 * 359.97319 * 6 4 3 11 11 C 1.39561 * 119.85305 * 359.77316 * 10 6 4 12 12 C 1.47850 * 120.14263 * 180.25311 * 11 10 6 13 13 O 1.21550 * 119.99385 * 186.29564 * 12 11 10 14 14 N 1.34773 * 120.00265 * 6.29711 * 12 11 10 15 15 C 1.46497 * 120.00223 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84847 * 336.19019 * 15 14 12 17 17 C 1.53776 * 113.61801 * 107.50232 * 15 14 12 18 18 C 1.53773 * 87.08189 * 89.11719 * 17 15 14 19 19 H 1.09005 * 113.61540 * 270.88207 * 18 17 15 20 20 C 1.52999 * 113.69015 * 139.99723 * 18 17 15 21 21 O 1.42898 * 109.47520 * 87.46132 * 20 18 17 22 22 C 1.35900 * 116.99802 * 179.97438 * 21 20 18 23 23 C 1.38728 * 120.06155 * 359.72926 * 22 21 20 24 24 C 1.38139 * 119.94654 * 179.69514 * 23 22 21 25 25 C 1.38264 * 120.05323 * 0.59931 * 24 23 22 26 26 C 1.38268 * 120.11424 * 359.67842 * 25 24 23 27 27 C 1.38138 * 120.05127 * 0.02562 * 26 25 24 28 28 C 1.53775 * 87.08251 * 25.43447 * 18 17 15 29 29 H 1.09000 * 109.46883 * 96.56472 * 1 2 3 30 30 H 1.09003 * 109.47254 * 216.56064 * 1 2 3 31 31 H 1.08998 * 109.47046 * 336.56502 * 1 2 3 32 32 H 1.07991 * 119.93021 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.46829 * 90.00438 * 5 4 3 34 34 H 1.09000 * 109.47487 * 209.99499 * 5 4 3 35 35 H 1.09001 * 109.47457 * 330.00152 * 5 4 3 36 36 H 1.08998 * 109.47708 * 44.99757 * 7 6 4 37 37 H 0.96700 * 114.00022 * 300.00660 * 8 7 6 38 38 H 1.48499 * 109.99975 * 179.97438 * 9 7 6 39 39 H 1.48503 * 109.99771 * 301.31313 * 9 7 6 40 40 H 1.08003 * 120.07200 * 180.02562 * 10 6 4 41 41 H 0.96997 * 119.99682 * 359.97438 * 14 12 11 42 42 H 1.09003 * 113.61710 * 203.66881 * 17 15 14 43 43 H 1.09010 * 113.61196 * 334.56436 * 17 15 14 44 44 H 1.09004 * 109.46931 * 207.46784 * 20 18 17 45 45 H 1.08995 * 109.46966 * 327.45958 * 20 18 17 46 46 H 1.08000 * 120.02205 * 359.97438 * 23 22 21 47 47 H 1.08004 * 119.97592 * 180.31893 * 24 23 22 48 48 H 1.08005 * 119.94493 * 179.69767 * 25 24 23 49 49 H 1.08003 * 119.97062 * 180.02562 * 26 25 24 50 50 H 1.08005 * 120.02585 * 179.97438 * 27 26 25 51 51 H 1.09002 * 113.61349 * 220.01787 * 28 18 17 52 52 H 1.08999 * 113.69138 * 89.13038 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1937 0.0000 4 6 3.5821 1.1954 -0.0005 5 6 4.3306 2.5033 0.0001 6 6 4.2814 0.0018 -0.0005 7 6 5.7883 0.0133 -0.0005 8 8 6.2619 0.3655 -1.3020 9 14 6.4222 -1.6786 0.4541 10 6 3.6021 -1.1992 0.0005 11 6 2.2065 -1.2080 0.0064 12 6 1.4722 -2.4913 0.0133 13 8 0.2618 -2.4993 -0.0970 14 7 2.1449 -3.6520 0.1419 15 6 1.4173 -4.9235 0.1481 16 1 0.3768 -4.8143 0.4541 17 6 1.5999 -5.7441 -1.1395 18 6 2.8265 -6.3815 -0.4659 19 1 3.7532 -5.8341 -0.6385 20 6 2.9642 -7.8817 -0.7330 21 8 3.6952 -8.0849 -1.9439 22 6 3.9078 -9.3711 -2.3278 23 6 3.4278 -10.4163 -1.5520 24 6 3.6398 -11.7227 -1.9477 25 6 4.3405 -11.9893 -3.1095 26 6 4.8249 -10.9495 -3.8815 27 6 4.6103 -9.6413 -3.4933 28 6 2.1591 -6.0542 0.8803 29 1 -0.3633 -0.1175 -1.0209 30 1 -0.3634 -0.8255 0.6122 31 1 -0.3633 0.9429 0.4087 32 1 1.6583 2.1289 0.0004 33 1 4.5115 2.8179 1.0279 34 1 5.2833 2.3771 -0.5141 35 1 3.7384 3.2611 -0.5130 36 1 6.1461 0.7427 0.7261 37 1 5.9811 -0.2416 -2.0004 38 1 7.9072 -1.6806 0.4570 39 1 5.9107 -2.0699 1.7922 40 1 4.1492 -2.1304 0.0010 41 1 3.1109 -3.6455 0.2296 42 1 0.7894 -6.4484 -1.3271 43 1 1.8462 -5.1386 -2.0119 44 1 3.4954 -8.3510 0.0952 45 1 1.9736 -8.3263 -0.8276 46 1 2.8849 -10.2085 -0.6418 47 1 3.2618 -12.5366 -1.3468 48 1 4.5094 -13.0114 -3.4146 49 1 5.3716 -11.1604 -4.7888 50 1 4.9892 -8.8294 -4.0964 51 1 2.8570 -5.6992 1.6387 52 1 1.5015 -6.8426 1.2463 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_9599494.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:43 Heat of formation + Delta-G solvation = -22.343306 kcal Electronic energy + Delta-G solvation = -32462.976029 eV Core-core repulsion = 28167.152728 eV Total energy + Delta-G solvation = -4295.823301 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.86701 -41.15315 -40.48072 -39.34022 -38.08422 -37.57435 -34.95335 -34.38567 -33.11646 -31.97528 -31.02336 -29.58241 -28.98592 -28.31689 -26.69144 -25.64504 -24.57783 -23.72732 -23.38441 -22.77982 -22.34568 -21.05506 -20.22966 -19.20530 -19.02739 -17.63119 -17.42983 -17.17734 -16.87436 -16.73472 -16.48257 -16.38749 -16.26080 -16.15601 -15.56039 -15.48164 -15.18937 -15.03141 -14.78717 -14.66351 -14.49128 -14.31611 -14.16898 -14.03143 -13.86837 -13.59805 -13.42247 -13.31716 -13.07744 -13.05525 -12.80917 -12.64827 -12.51518 -12.47730 -12.17642 -12.05280 -12.00108 -11.88815 -11.67137 -11.55179 -11.14551 -10.74737 -10.43294 -10.16174 -9.94190 -9.90989 -9.61729 -9.14396 -5.07513 -0.27272 0.15736 0.40398 0.50922 1.26774 1.59164 1.72448 1.94724 2.02317 2.22637 2.62799 2.86248 3.43938 3.45008 3.50004 3.55529 3.61566 3.71009 3.79534 3.82952 3.85146 3.93749 4.01313 4.14008 4.21379 4.26684 4.32718 4.36804 4.45071 4.47581 4.50509 4.52475 4.55751 4.59980 4.66751 4.70790 4.73709 4.75267 4.78844 4.79503 4.84923 4.90808 5.01811 5.05950 5.08043 5.10043 5.13557 5.18739 5.27241 5.37082 5.46977 5.48915 5.49816 5.60578 5.62876 5.78841 5.87937 6.44282 6.49591 6.74965 7.13877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.025 4.025 3 C -0.137 4.137 4 C -0.032 4.032 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.068 4.068 8 O -0.550 6.550 9 Si 0.756 3.244 10 C -0.064 4.064 11 C -0.158 4.158 12 C 0.560 3.440 13 O -0.561 6.561 14 N -0.699 5.699 15 C 0.114 3.886 16 H 0.091 0.909 17 C -0.144 4.144 18 C -0.104 4.104 19 H 0.110 0.890 20 C 0.064 3.936 21 O -0.327 6.327 22 C 0.114 3.886 23 C -0.219 4.219 24 C -0.090 4.090 25 C -0.171 4.171 26 C -0.088 4.088 27 C -0.172 4.172 28 C -0.123 4.123 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.395 0.605 38 H -0.296 1.296 39 H -0.276 1.276 40 H 0.152 0.848 41 H 0.412 0.588 42 H 0.094 0.906 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.146 0.854 50 H 0.133 0.867 51 H 0.092 0.908 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.953 -2.685 0.846 3.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.026 4.026 3 C -0.155 4.155 4 C -0.032 4.032 5 C -0.183 4.183 6 C -0.140 4.140 7 C -0.178 4.178 8 O -0.358 6.358 9 Si 0.661 3.339 10 C -0.082 4.082 11 C -0.161 4.161 12 C 0.349 3.651 13 O -0.441 6.441 14 N -0.351 5.351 15 C 0.009 3.991 16 H 0.109 0.891 17 C -0.183 4.183 18 C -0.122 4.122 19 H 0.128 0.872 20 C -0.010 4.010 21 O -0.241 6.241 22 C 0.068 3.932 23 C -0.238 4.238 24 C -0.108 4.108 25 C -0.189 4.189 26 C -0.106 4.106 27 C -0.191 4.191 28 C -0.161 4.161 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.245 0.755 38 H -0.223 1.223 39 H -0.202 1.202 40 H 0.169 0.831 41 H 0.249 0.751 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.159 0.841 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.163 0.837 50 H 0.151 0.849 51 H 0.111 0.889 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.881 -2.508 1.583 3.512 hybrid contribution 0.066 0.568 0.272 0.633 sum 1.947 -1.940 1.855 3.316 Atomic orbital electron populations 1.21037 0.90101 1.03245 1.03143 1.20223 0.96997 0.91969 0.93430 1.21190 0.93678 0.98036 1.02608 1.20234 0.93489 0.95936 0.93549 1.21009 1.00970 0.93125 1.03238 1.20184 0.96570 0.92791 1.04437 1.25104 0.91019 1.12343 0.89366 1.86475 1.75991 1.56760 1.16572 0.94216 0.77819 0.78623 0.83251 1.21171 0.92371 0.97857 0.96786 1.19664 0.93768 0.92794 1.09915 1.18396 0.86774 0.84280 0.75602 1.90736 1.15083 1.87466 1.50788 1.45514 1.11183 1.04687 1.73733 1.21853 0.97169 0.82391 0.97710 0.89056 1.23505 0.98382 0.99079 0.97343 1.22634 0.99206 0.93280 0.97090 0.87188 1.23019 0.95857 0.97382 0.84786 1.86050 1.71838 1.23360 1.42840 1.19239 0.95841 0.83591 0.94496 1.21503 1.06609 0.93179 1.02474 1.21303 0.96610 0.96424 0.96446 1.21415 1.00930 1.00265 0.96256 1.21294 0.97921 0.91468 0.99890 1.20710 1.03384 0.98186 0.96813 1.23311 0.99675 0.97282 0.95793 0.91131 0.90241 0.90900 0.83799 0.90100 0.90143 0.90379 0.87177 0.75542 1.22329 1.20178 0.83135 0.75057 0.88762 0.91670 0.90722 0.91235 0.84082 0.84048 0.84305 0.83652 0.84879 0.88924 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 8.75 71.24 0.62 0.07 16 2 C -0.03 -0.10 5.91 -19.61 -0.12 -0.22 16 3 C -0.14 -0.20 9.31 22.23 0.21 0.01 16 4 C -0.03 -0.02 5.89 -19.80 -0.12 -0.13 16 5 C -0.13 0.22 9.31 71.24 0.66 0.89 16 6 C -0.14 0.16 5.25 -19.91 -0.10 0.05 16 7 C -0.07 0.18 1.88 71.23 0.13 0.31 16 8 O -0.55 1.17 11.92 -148.98 -1.78 -0.61 16 9 Si 0.76 -3.34 29.91 68.60 2.05 -1.29 16 10 C -0.06 0.14 8.13 22.53 0.18 0.32 16 11 C -0.16 -0.42 5.87 -20.09 -0.12 -0.54 16 12 C 0.56 2.47 7.70 86.79 0.67 3.14 16 13 O -0.56 -6.30 12.93 -3.87 -0.05 -6.35 16 14 N -0.70 1.47 5.21 -442.92 -2.31 -0.83 16 15 C 0.11 -0.30 4.32 45.52 0.20 -0.10 16 16 H 0.09 0.13 7.46 -2.38 -0.02 0.11 16 17 C -0.14 0.42 7.43 31.12 0.23 0.65 16 18 C -0.10 0.62 3.88 -10.27 -0.04 0.58 16 19 H 0.11 -0.79 8.14 -2.38 -0.02 -0.81 16 20 C 0.06 -0.24 4.58 71.98 0.33 0.09 16 21 O -0.33 -0.86 10.14 -92.43 -0.94 -1.79 16 22 C 0.11 0.44 6.69 22.51 0.15 0.59 16 23 C -0.22 -0.31 9.04 22.36 0.20 -0.11 16 24 C -0.09 -0.05 10.04 22.25 0.22 0.17 16 25 C -0.17 -0.12 10.04 22.28 0.22 0.10 16 26 C -0.09 -0.11 10.04 22.25 0.22 0.11 16 27 C -0.17 -0.59 9.99 22.37 0.22 -0.37 16 28 C -0.12 0.96 7.39 31.12 0.23 1.19 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.68 5.82 -2.39 -0.01 0.66 16 31 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 32 H 0.14 -0.24 8.06 -2.92 -0.02 -0.27 16 33 H 0.08 -0.25 8.14 -2.38 -0.02 -0.27 16 34 H 0.08 -0.03 6.18 -2.39 -0.01 -0.05 16 35 H 0.08 -0.24 8.08 -2.39 -0.02 -0.26 16 36 H 0.11 -0.19 7.38 -2.39 -0.02 -0.20 16 37 H 0.39 -3.75 8.70 -74.06 -0.64 -4.40 16 38 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 39 H -0.28 0.11 7.11 99.48 0.71 0.82 16 40 H 0.15 -1.29 3.52 -2.91 -0.01 -1.30 16 41 H 0.41 -3.18 6.78 -92.71 -0.63 -3.81 16 42 H 0.09 -0.28 7.90 -2.39 -0.02 -0.30 16 43 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H 0.07 -0.43 7.65 -2.38 -0.02 -0.45 16 45 H 0.07 -0.33 7.38 -2.39 -0.02 -0.34 16 46 H 0.14 -0.38 6.30 -2.91 -0.02 -0.40 16 47 H 0.14 -0.52 8.06 -2.91 -0.02 -0.55 16 48 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 49 H 0.15 -0.45 8.06 -2.91 -0.02 -0.47 16 50 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 51 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 52 H 0.11 -1.09 8.10 -2.39 -0.02 -1.11 16 Total: 0.00 -19.45 416.08 0.92 -18.53 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: -0.28 Total: -14.45 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 4.22 Total: 6.80 kcal Atomic # 7 Polarization: 1.47 SS G_CDS: -2.31 Total: -0.83 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -2.76 Total: -8.75 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.05 Total: -1.29 kcal Total: -19.45 0.92 -18.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_9599494.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.818 kcal (2) G-P(sol) polarization free energy of solvation -19.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds