Wall clock time and date at job start Sun Mar 7 2021 05:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99478 * 2 1 4 4 C 1.53001 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.09008 * 112.85054 * 43.80692 * 4 3 2 6 6 C 1.53785 * 113.61076 * 174.99659 * 4 3 2 7 7 C 1.53789 * 87.07819 * 140.07035 * 6 4 3 8 8 H 1.09000 * 113.61480 * 89.20318 * 7 6 4 9 9 N 1.46497 * 113.61190 * 220.02032 * 7 6 4 10 10 C 1.34772 * 119.99902 * 203.46715 * 9 7 6 11 11 O 1.21718 * 120.00111 * 0.02562 * 10 9 7 12 12 C 1.46564 * 120.00202 * 180.02562 * 10 9 7 13 13 C 1.40860 * 126.58145 * 180.02562 * 12 10 9 14 14 C 1.40085 * 132.86365 * 359.97438 * 13 12 10 15 15 C 1.36447 * 119.25376 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.29835 * 180.27144 * 15 14 13 17 17 O 1.42898 * 109.46965 * 119.72140 * 16 15 14 18 18 Si 1.86299 * 109.47561 * 239.72301 * 16 15 14 19 19 C 1.40165 * 119.40842 * 359.97438 * 15 14 13 20 20 C 1.35183 * 120.32065 * 359.97438 * 19 15 14 21 21 N 1.36242 * 120.70632 * 0.02802 * 20 19 15 22 22 N 1.40016 * 132.01761 * 180.02562 * 21 20 19 23 23 C 1.30739 * 109.60770 * 179.97438 * 22 21 20 24 24 C 1.53782 * 87.17191 * 334.61036 * 7 6 4 25 25 H 1.08999 * 109.47459 * 60.00551 * 1 2 3 26 26 H 1.09009 * 109.46788 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47372 * 300.00064 * 1 2 3 28 28 H 1.08998 * 109.47432 * 60.00299 * 3 2 1 29 29 H 1.08996 * 109.46915 * 299.99612 * 3 2 1 30 30 H 1.08992 * 113.61166 * 25.52305 * 6 4 3 31 31 H 1.08999 * 113.68761 * 254.62699 * 6 4 3 32 32 H 0.97001 * 120.00322 * 23.47312 * 9 7 6 33 33 H 1.08002 * 120.37563 * 359.96697 * 14 13 12 34 34 H 1.09003 * 109.46685 * 359.72444 * 16 15 14 35 35 H 0.96694 * 114.00382 * 60.00434 * 17 16 15 36 36 H 1.48499 * 109.99874 * 58.67899 * 18 16 15 37 37 H 1.48497 * 110.00089 * 180.02562 * 18 16 15 38 38 H 1.08001 * 119.84107 * 180.02562 * 19 15 14 39 39 H 1.07992 * 119.65003 * 179.97438 * 20 19 15 40 40 H 1.07996 * 125.62961 * 180.02562 * 23 22 21 41 41 H 1.08994 * 113.61260 * 139.93913 * 24 7 6 42 42 H 1.08997 * 113.61496 * 270.84344 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 6 3.7422 1.9400 0.0006 5 1 4.2448 1.2673 -0.6944 6 6 4.1961 3.4042 -0.1222 7 6 5.2881 3.0698 0.9078 8 1 6.2137 2.7075 0.4607 9 7 5.5096 4.1307 1.8935 10 6 6.6906 4.2167 2.5370 11 8 7.5734 3.4132 2.2989 12 6 6.9122 5.2777 3.5235 13 6 8.0851 5.4962 4.2723 14 6 9.3197 4.8363 4.3235 15 6 10.2863 5.2949 5.1704 16 6 11.6251 4.6067 5.2401 17 8 12.6547 5.5303 4.8812 18 14 11.9185 3.9928 6.9744 19 6 10.0250 6.4157 5.9705 20 6 8.8265 7.0374 5.9038 21 7 7.8551 6.5870 5.0614 22 7 6.5548 7.0382 4.8038 23 6 5.9961 6.2743 3.9018 24 6 4.3648 1.9466 1.4086 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8030 2.2372 0.8900 29 1 1.8030 2.2371 -0.8900 30 1 3.4595 4.1214 0.2397 31 1 4.5880 3.6601 -1.1066 32 1 4.8063 4.7713 2.0830 33 1 9.5045 3.9742 3.6998 34 1 11.6365 3.7635 4.5493 35 1 12.7033 6.3075 5.4545 36 1 10.8370 3.0558 7.3712 37 1 13.2360 3.3126 7.0563 38 1 10.7852 6.7849 6.6431 39 1 8.6366 7.8998 6.5254 40 1 4.9956 6.3899 3.5118 41 1 4.8927 1.0262 1.6579 42 1 3.6744 2.2646 2.1898 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:28:39 Heat of formation + Delta-G solvation = 60.206565 kcal Electronic energy + Delta-G solvation = -25407.655167 eV Core-core repulsion = 21676.157873 eV Total energy + Delta-G solvation = -3731.497294 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.114 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.31499 -41.04517 -39.52507 -39.11510 -37.21421 -34.81161 -34.17360 -32.09871 -31.00577 -30.05595 -29.51104 -27.32337 -26.71843 -25.24585 -24.32756 -23.21728 -22.68092 -21.43876 -20.58306 -19.06320 -18.50040 -17.95484 -17.61593 -17.43262 -17.00373 -16.85110 -16.47104 -16.37071 -15.86775 -15.79956 -15.40455 -15.22190 -15.09882 -14.69077 -14.51407 -14.24615 -14.20407 -14.02194 -13.79378 -13.50535 -13.43837 -13.37587 -13.14542 -12.89846 -12.41140 -12.26745 -12.12117 -11.97807 -11.59851 -11.55452 -11.47179 -10.96470 -10.88943 -10.79363 -10.27003 -10.07284 -8.81215 -8.71510 -5.08392 -0.58119 -0.11494 0.72925 0.99365 1.04632 1.19452 1.67193 1.68038 1.95408 2.06721 2.23901 2.45443 3.07604 3.22861 3.42930 3.45920 3.55869 3.59517 3.72376 3.74783 3.80911 3.86922 3.95415 4.15945 4.24477 4.29699 4.31017 4.34077 4.37343 4.40627 4.54096 4.61596 4.72442 4.73279 4.81322 4.83951 4.86265 5.00039 5.04810 5.09738 5.15739 5.25965 5.29227 5.59359 5.67022 6.27998 6.59440 6.76192 7.27527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.331 6.331 3 C -0.055 4.055 4 C -0.089 4.089 5 H 0.091 0.909 6 C -0.116 4.116 7 C 0.120 3.880 8 H 0.090 0.910 9 N -0.702 5.702 10 C 0.596 3.404 11 O -0.598 6.598 12 C -0.348 4.348 13 C 0.150 3.850 14 C -0.136 4.136 15 C -0.053 4.053 16 C -0.078 4.078 17 O -0.546 6.546 18 Si 0.817 3.183 19 C -0.146 4.146 20 C 0.115 3.885 21 N -0.273 5.273 22 N -0.337 5.337 23 C 0.132 3.868 24 C -0.141 4.141 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.415 0.585 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.401 0.599 36 H -0.304 1.304 37 H -0.290 1.290 38 H 0.223 0.777 39 H 0.215 0.785 40 H 0.235 0.765 41 H 0.053 0.947 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 7.457 4.302 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.106 6.106 3 C -0.203 4.203 4 C -0.109 4.109 5 H 0.109 0.891 6 C -0.155 4.155 7 C 0.015 3.985 8 H 0.109 0.891 9 N -0.353 5.353 10 C 0.386 3.614 11 O -0.481 6.481 12 C -0.363 4.363 13 C 0.028 3.972 14 C -0.156 4.156 15 C -0.059 4.059 16 C -0.186 4.186 17 O -0.355 6.355 18 Si 0.721 3.279 19 C -0.166 4.166 20 C -0.010 4.010 21 N -0.037 5.037 22 N -0.157 5.157 23 C -0.048 4.048 24 C -0.180 4.180 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.252 0.748 36 H -0.231 1.231 37 H -0.217 1.217 38 H 0.240 0.760 39 H 0.232 0.768 40 H 0.251 0.749 41 H 0.072 0.928 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.384 5.993 4.894 7.860 hybrid contribution -1.306 -0.266 -1.392 1.927 sum -2.690 5.727 3.502 7.232 Atomic orbital electron populations 1.23396 0.91458 1.07144 1.05826 1.87346 1.10521 1.14522 1.98206 1.23368 0.98674 0.92195 1.06100 1.22058 0.92789 0.98150 0.97901 0.89091 1.23354 0.96916 0.95749 0.99511 1.22423 0.97957 0.88257 0.89908 0.89140 1.45523 1.15240 1.32946 1.41559 1.17143 0.82134 0.82533 0.79543 1.90750 1.45112 1.44665 1.67531 1.19729 0.96410 1.07493 1.12648 1.19478 0.95537 0.89361 0.92774 1.20634 0.91026 1.02208 1.01737 1.20776 0.96211 0.95528 0.93413 1.25336 0.84255 0.95415 1.13546 1.86584 1.51766 1.37007 1.60160 0.93870 0.76101 0.84249 0.73657 1.21366 0.97559 0.95538 1.02162 1.22489 0.85614 1.00713 0.92190 1.46384 1.11621 1.19210 1.26460 1.77547 0.89080 1.25010 1.24107 1.24581 1.00271 0.89015 0.90976 1.23557 0.98611 0.98596 0.97236 0.89465 0.87882 0.89546 0.88687 0.88519 0.86815 0.89596 0.74780 0.84679 0.87834 0.74772 1.23145 1.21664 0.76040 0.76841 0.74904 0.92834 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.26 10.76 113.37 1.22 1.48 16 2 S -0.33 -1.10 22.37 -56.49 -1.26 -2.36 16 3 C -0.06 0.15 5.78 71.98 0.42 0.57 16 4 C -0.09 0.14 3.65 -10.21 -0.04 0.11 16 5 H 0.09 0.11 8.13 -2.38 -0.02 0.09 16 6 C -0.12 0.56 7.39 31.12 0.23 0.79 16 7 C 0.12 0.18 4.21 45.52 0.19 0.37 16 8 H 0.09 0.65 7.50 -2.39 -0.02 0.63 16 9 N -0.70 -0.85 5.35 -444.09 -2.38 -3.22 16 10 C 0.60 5.73 7.78 86.41 0.67 6.41 16 11 O -0.60 -10.87 15.32 -4.41 -0.07 -10.93 16 12 C -0.35 -2.59 6.17 -19.90 -0.12 -2.71 16 13 C 0.15 1.22 6.76 39.49 0.27 1.49 16 14 C -0.14 -0.97 9.35 22.30 0.21 -0.76 16 15 C -0.05 0.05 4.53 -19.81 -0.09 -0.04 16 16 C -0.08 0.16 2.84 71.24 0.20 0.36 16 17 O -0.55 1.63 12.87 -148.98 -1.92 -0.29 16 18 Si 0.82 -3.88 31.96 68.60 2.19 -1.69 16 19 C -0.15 1.28 8.38 22.03 0.18 1.46 16 20 C 0.12 -0.60 11.17 83.30 0.93 0.33 16 21 N -0.27 -1.03 3.86 -187.28 -0.72 -1.76 16 22 N -0.34 -1.58 12.57 -56.62 -0.71 -2.30 16 23 C 0.13 0.21 11.44 85.42 0.98 1.18 16 24 C -0.14 -0.16 7.45 31.18 0.23 0.07 16 25 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.10 -0.28 8.14 -2.39 -0.02 -0.29 16 27 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 28 H 0.09 -0.48 7.86 -2.39 -0.02 -0.49 16 29 H 0.10 -0.48 8.14 -2.39 -0.02 -0.49 16 30 H 0.11 -1.07 8.07 -2.39 -0.02 -1.09 16 31 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.41 -2.58 7.63 -92.71 -0.71 -3.29 16 33 H 0.14 1.52 7.01 -2.91 -0.02 1.50 16 34 H 0.10 0.17 7.71 -2.39 -0.02 0.15 16 35 H 0.40 -5.71 8.09 -74.06 -0.60 -6.31 16 36 H -0.30 -1.06 7.11 99.48 0.71 -0.36 16 37 H -0.29 -0.71 7.11 99.48 0.71 0.00 16 38 H 0.22 -4.60 7.31 -2.91 -0.02 -4.62 16 39 H 0.21 -2.77 8.06 -2.91 -0.02 -2.79 16 40 H 0.23 -1.99 7.46 -2.91 -0.02 -2.01 16 41 H 0.05 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.10 -0.08 7.91 -2.39 -0.02 -0.10 16 Total: 0.00 -32.25 367.76 0.41 -31.84 By element: Atomic # 1 Polarization: -20.20 SS G_CDS: -0.21 Total: -20.41 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.48 Total: 11.11 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: -3.81 Total: -7.28 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -1.99 Total: -11.22 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.19 Total: -1.69 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -1.26 Total: -2.36 kcal Total: -32.25 0.41 -31.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.052 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds