Wall clock time and date at job start Sun Mar 7 2021 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47095 * 171.26239 * 3 2 1 5 5 C 1.52993 * 109.47408 * 291.26790 * 3 2 1 6 6 C 1.50697 * 109.47440 * 174.90412 * 5 3 2 7 7 O 1.21281 * 120.00116 * 119.85127 * 6 5 3 8 8 N 1.34781 * 120.00124 * 299.86041 * 6 5 3 9 9 C 1.46499 * 120.00072 * 174.94192 * 8 6 5 10 10 H 1.08997 * 112.84854 * 336.19350 * 9 8 6 11 11 C 1.53778 * 113.68863 * 107.46245 * 9 8 6 12 12 C 1.54057 * 87.07694 * 139.98599 * 11 9 8 13 13 H 1.09007 * 113.61165 * 89.07095 * 12 11 9 14 14 C 1.52997 * 113.69824 * 220.05186 * 12 11 9 15 15 S 1.81407 * 109.46918 * 272.42341 * 14 12 11 16 16 C 1.81401 * 102.99724 * 179.97438 * 15 14 12 17 17 C 1.53780 * 113.61125 * 204.99735 * 9 8 6 18 18 N 1.46499 * 109.46999 * 294.90649 * 5 3 2 19 19 C 1.36345 * 125.63578 * 299.43888 * 18 5 3 20 20 C 1.34855 * 108.21796 * 180.02562 * 19 18 5 21 21 C 1.40892 * 107.41845 * 0.02562 * 20 19 18 22 22 C 1.34856 * 107.41610 * 359.73658 * 21 20 19 23 23 C 1.50696 * 125.89027 * 180.25504 * 22 21 20 24 24 O 1.42896 * 109.47118 * 137.76846 * 23 22 21 25 25 Si 1.86305 * 109.47224 * 17.76609 * 23 22 21 26 26 H 1.09002 * 109.47443 * 50.01408 * 1 2 3 27 27 H 1.09001 * 109.47289 * 170.01283 * 1 2 3 28 28 H 1.09005 * 109.47092 * 290.00952 * 1 2 3 29 29 H 1.09006 * 109.46889 * 240.00948 * 2 1 3 30 30 H 1.08994 * 109.47655 * 120.00684 * 2 1 3 31 31 H 1.09003 * 109.46516 * 51.26508 * 3 2 1 32 32 H 1.08997 * 109.46871 * 165.63655 * 4 3 2 33 33 H 1.08991 * 109.47355 * 285.64079 * 4 3 2 34 34 H 1.09008 * 109.46621 * 45.63917 * 4 3 2 35 35 H 1.09003 * 109.47203 * 54.90349 * 5 3 2 36 36 H 0.97001 * 119.99505 * 354.93574 * 8 6 5 37 37 H 1.09002 * 113.61400 * 254.53610 * 11 9 8 38 38 H 1.08999 * 113.61665 * 25.35867 * 11 9 8 39 39 H 1.08998 * 109.47127 * 32.41832 * 14 12 11 40 40 H 1.08991 * 109.47155 * 152.42311 * 14 12 11 41 41 H 1.08996 * 109.47228 * 60.00023 * 16 15 14 42 42 H 1.09000 * 109.46840 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.46879 * 299.99657 * 16 15 14 44 44 H 1.08997 * 113.61549 * 334.48086 * 17 9 8 45 45 H 1.09005 * 113.61728 * 105.30254 * 17 9 8 46 46 H 1.08000 * 125.89020 * 0.02562 * 19 18 5 47 47 H 1.08004 * 126.28754 * 179.97438 * 20 19 18 48 48 H 1.07997 * 126.28898 * 179.97438 * 21 20 19 49 49 H 1.09005 * 109.47177 * 257.76867 * 23 22 21 50 50 H 0.96693 * 114.00488 * 307.11120 * 24 23 22 51 51 H 1.48503 * 109.99787 * 179.97438 * 25 23 22 52 52 H 1.48493 * 109.99896 * 301.32256 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5542 1.4481 0.2191 5 6 1.7167 2.0978 -1.3442 6 6 2.1058 3.5530 -1.3002 7 8 2.9293 3.9844 -2.0790 8 7 1.5387 4.3752 -0.3951 9 6 1.9957 5.7621 -0.2777 10 1 3.0144 5.9040 -0.6383 11 6 0.9967 6.7908 -0.8331 12 6 1.3577 7.6762 0.3749 13 1 2.2025 8.3405 0.1923 14 6 0.1562 8.3959 0.9906 15 16 -0.1052 9.9751 0.1369 16 6 -1.5467 10.6679 0.9930 17 6 1.7408 6.3794 1.1074 18 7 2.4651 1.4242 -2.4083 19 6 3.8233 1.3395 -2.4932 20 6 4.1336 0.6462 -3.6074 21 6 2.9228 0.2903 -4.2337 22 6 1.9185 0.7747 -3.4752 23 6 0.4460 0.6266 -3.7597 24 8 -0.2451 0.3216 -2.5467 25 14 0.1859 -0.7515 -4.9861 26 1 -0.3634 0.6604 -0.7874 27 1 -0.3634 -1.0121 -0.1782 28 1 -0.3633 0.3517 0.9657 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.5548 1.9993 0.8017 32 1 3.9539 2.4308 -0.0312 33 1 3.7711 1.2228 1.2632 34 1 4.0163 0.6946 -0.4187 35 1 0.6481 2.0132 -1.5420 36 1 0.8279 4.0485 0.1785 37 1 1.2954 7.2164 -1.7912 38 1 -0.0364 6.4432 -0.8281 39 1 -0.7329 7.7744 0.8851 40 1 0.3465 8.5815 2.0477 41 1 -1.3142 10.7966 2.0501 42 1 -1.7991 11.6340 0.5559 43 1 -2.3930 9.9892 0.8871 44 1 0.9111 5.9199 1.6444 45 1 2.6401 6.4715 1.7167 46 1 4.5288 1.7558 -1.7894 47 1 5.1278 0.4082 -3.9560 48 1 2.8182 -0.2709 -5.1504 49 1 0.0603 1.5585 -4.1732 50 1 0.1182 -0.4349 -2.0665 51 1 -1.2624 -0.9080 -5.2745 52 1 0.9258 -0.4614 -6.2405 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:29:17 Heat of formation + Delta-G solvation = 16.886532 kcal Electronic energy + Delta-G solvation = -31187.080255 eV Core-core repulsion = 27281.658319 eV Total energy + Delta-G solvation = -3905.421935 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.84800 -41.12575 -39.56533 -38.17594 -37.46914 -34.86995 -33.05831 -31.32045 -30.97543 -30.73091 -29.80067 -28.12011 -26.88248 -25.84410 -25.00535 -23.89043 -22.10957 -21.66062 -21.38294 -20.92747 -20.20189 -18.90805 -18.03208 -17.73580 -17.09412 -16.90485 -16.72636 -16.55231 -16.21491 -15.95928 -15.48493 -15.36367 -15.20393 -14.82181 -14.70392 -14.55516 -14.39297 -14.32156 -14.21456 -14.03211 -13.93438 -13.72076 -13.63262 -13.51782 -13.41175 -13.12223 -13.00482 -12.94633 -12.33598 -12.27220 -12.14335 -11.95380 -11.89270 -11.80552 -11.72672 -11.63360 -11.58508 -10.96954 -10.91272 -10.47527 -10.15783 -9.40654 -8.77348 -8.68974 -4.94165 0.62896 1.19581 1.30648 1.42403 1.56876 1.71925 1.84176 2.06686 2.21984 2.31906 3.22996 3.25902 3.32871 3.37948 3.45857 3.57548 3.58140 3.64511 3.80607 3.84218 4.06210 4.10248 4.11692 4.14430 4.17395 4.20450 4.30030 4.36619 4.37411 4.48224 4.49667 4.50079 4.59074 4.59554 4.64697 4.69709 4.70768 4.79322 4.82206 4.83895 4.89906 4.94122 4.97620 5.07448 5.10140 5.13598 5.37998 5.40495 5.47185 5.52714 6.15648 6.24792 6.36887 6.49130 6.53791 7.04457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 C -0.092 4.092 4 C -0.165 4.165 5 C 0.111 3.889 6 C 0.505 3.495 7 O -0.515 6.515 8 N -0.716 5.716 9 C 0.125 3.875 10 H 0.117 0.883 11 C -0.143 4.143 12 C -0.092 4.092 13 H 0.105 0.895 14 C -0.073 4.073 15 S -0.262 6.262 16 C -0.123 4.123 17 C -0.135 4.135 18 N -0.410 5.410 19 C 0.019 3.981 20 C -0.204 4.204 21 C -0.186 4.186 22 C -0.023 4.023 23 C -0.052 4.052 24 O -0.547 6.547 25 Si 0.719 3.281 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.401 0.599 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.163 0.837 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.109 0.891 50 H 0.382 0.618 51 H -0.256 1.256 52 H -0.255 1.255 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -2.792 6.635 7.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.158 4.158 3 C -0.111 4.111 4 C -0.222 4.222 5 C 0.004 3.996 6 C 0.289 3.711 7 O -0.389 6.389 8 N -0.368 5.368 9 C 0.020 3.980 10 H 0.135 0.865 11 C -0.182 4.182 12 C -0.112 4.112 13 H 0.123 0.877 14 C -0.221 4.221 15 S -0.036 6.036 16 C -0.291 4.291 17 C -0.175 4.175 18 N -0.087 5.087 19 C -0.111 4.111 20 C -0.228 4.228 21 C -0.211 4.211 22 C -0.133 4.133 23 C -0.162 4.162 24 O -0.357 6.357 25 Si 0.619 3.381 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.158 0.842 36 H 0.236 0.764 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.180 0.820 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.127 0.873 50 H 0.234 0.766 51 H -0.181 1.181 52 H -0.180 1.180 Dipole moment (debyes) X Y Z Total from point charges -2.230 -1.583 4.519 5.282 hybrid contribution -0.851 0.334 1.549 1.799 sum -3.081 -1.250 6.068 6.919 Atomic orbital electron populations 1.22381 0.95243 1.03488 1.03406 1.21626 0.96392 0.94738 1.03085 1.21484 0.97975 0.97845 0.93831 1.22290 0.94470 1.02588 1.02850 1.21633 0.99720 0.89297 0.88971 1.20736 0.81661 0.88007 0.80660 1.90797 1.32744 1.76734 1.38654 1.45910 1.39999 1.11738 1.39184 1.22501 0.99756 0.79142 0.96617 0.86541 1.23588 1.00047 0.95900 0.98653 1.22148 0.97375 0.94882 0.96793 0.87732 1.23373 1.01203 0.95723 1.01807 1.87101 1.41246 1.23509 1.51729 1.23399 0.98060 1.04515 1.03173 1.23419 1.02588 0.95203 0.96241 1.43405 1.05610 1.41002 1.18653 1.21957 0.83449 1.04466 1.01180 1.20832 0.98261 1.06518 0.97191 1.20668 0.92016 1.07066 1.01329 1.20704 0.95060 1.05197 0.92366 1.24843 0.87090 1.08837 0.95435 1.86567 1.59224 1.54028 1.35926 0.94041 0.80364 0.85702 0.77958 0.88906 0.91973 0.92456 0.91224 0.91003 0.89267 0.92461 0.91721 0.90580 0.84193 0.76387 0.90438 0.89472 0.89983 0.89745 0.90429 0.87923 0.90483 0.89239 0.90046 0.82002 0.84584 0.84417 0.87330 0.76594 1.18095 1.18000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 0.68 7.93 37.16 0.29 0.97 16 2 C -0.12 0.36 5.06 -26.73 -0.14 0.23 16 3 C -0.09 0.23 2.14 -90.62 -0.19 0.04 16 4 C -0.16 0.25 7.47 37.16 0.28 0.53 16 5 C 0.11 -0.05 2.21 -69.09 -0.15 -0.20 16 6 C 0.50 0.67 5.90 -10.98 -0.06 0.61 16 7 O -0.52 -2.95 15.07 5.56 0.08 -2.87 16 8 N -0.72 1.13 5.17 -53.02 -0.27 0.86 16 9 C 0.12 -0.14 4.21 -67.12 -0.28 -0.42 16 10 H 0.12 0.10 7.53 -51.93 -0.39 -0.29 16 11 C -0.14 0.11 7.44 -25.77 -0.19 -0.08 16 12 C -0.09 0.16 3.67 -89.66 -0.33 -0.17 16 13 H 0.10 -0.08 8.13 -51.92 -0.42 -0.50 16 14 C -0.07 0.11 5.78 37.16 0.21 0.33 16 15 S -0.26 -0.25 22.37 -107.50 -2.40 -2.65 16 16 C -0.12 0.16 10.76 101.05 1.09 1.24 16 17 C -0.13 0.42 7.38 -25.92 -0.19 0.22 16 18 N -0.41 -0.61 1.73 -106.71 -0.18 -0.79 16 19 C 0.02 0.05 7.55 -16.75 -0.13 -0.08 16 20 C -0.20 -0.59 10.86 -39.78 -0.43 -1.02 16 21 C -0.19 -0.46 9.39 -39.78 -0.37 -0.83 16 22 C -0.02 -0.04 6.13 -81.79 -0.50 -0.54 16 23 C -0.05 -0.01 2.72 36.00 0.10 0.08 16 24 O -0.55 0.61 8.09 -35.23 -0.29 0.33 16 25 Si 0.72 -0.33 30.99 -169.99 -5.27 -5.60 16 26 H 0.09 -0.27 3.52 -51.05 -0.18 -0.45 16 27 H 0.06 -0.24 7.88 -51.93 -0.41 -0.65 16 28 H 0.06 -0.21 8.14 -51.93 -0.42 -0.63 16 29 H 0.07 -0.14 6.92 -51.93 -0.36 -0.50 16 30 H 0.07 -0.22 8.12 -51.93 -0.42 -0.64 16 31 H 0.09 -0.35 7.53 -51.93 -0.39 -0.75 16 32 H 0.06 0.00 6.36 -51.93 -0.33 -0.33 16 33 H 0.06 -0.14 8.14 -51.93 -0.42 -0.57 16 34 H 0.08 -0.06 5.73 -51.92 -0.30 -0.36 16 35 H 0.14 -0.13 4.64 -51.93 -0.24 -0.37 16 36 H 0.40 -1.68 8.27 -40.82 -0.34 -2.02 16 37 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.09 -0.10 7.91 -51.93 -0.41 -0.51 16 39 H 0.08 -0.18 7.85 -51.93 -0.41 -0.59 16 40 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 42 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 43 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 44 H 0.09 -0.39 8.08 -51.93 -0.42 -0.81 16 45 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 46 H 0.16 0.30 5.73 -52.49 -0.30 0.00 16 47 H 0.14 0.23 8.06 -52.48 -0.42 -0.19 16 48 H 0.14 0.20 6.36 -52.49 -0.33 -0.14 16 49 H 0.11 0.12 7.96 -51.93 -0.41 -0.29 16 50 H 0.38 -1.18 5.24 46.50 0.24 -0.94 16 51 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 52 H -0.26 -0.56 6.93 56.52 0.39 -0.17 16 LS Contribution 401.03 15.07 6.04 6.04 Total: 0.00 -6.86 401.03 -12.13 -18.98 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: -8.84 Total: -15.22 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.00 Total: 0.91 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -0.46 Total: 0.07 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -0.20 Total: -2.54 kcal Atomic # 14 Polarization: -0.33 SS G_CDS: -5.27 Total: -5.60 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.40 Total: -2.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -6.86 -12.13 -18.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.870 kcal (2) G-P(sol) polarization free energy of solvation -6.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds