Wall clock time and date at job start Sun Mar 7 2021 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47095 * 171.26239 * 3 2 1 5 5 C 1.52993 * 109.47408 * 291.26790 * 3 2 1 6 6 C 1.50697 * 109.47440 * 174.90412 * 5 3 2 7 7 O 1.21281 * 120.00116 * 119.85127 * 6 5 3 8 8 N 1.34781 * 120.00124 * 299.86041 * 6 5 3 9 9 C 1.46499 * 120.00072 * 174.94192 * 8 6 5 10 10 H 1.08997 * 112.84854 * 336.19350 * 9 8 6 11 11 C 1.53778 * 113.68863 * 107.46245 * 9 8 6 12 12 C 1.54057 * 87.07694 * 139.98599 * 11 9 8 13 13 H 1.09007 * 113.61165 * 89.07095 * 12 11 9 14 14 C 1.52997 * 113.69824 * 220.05186 * 12 11 9 15 15 S 1.81407 * 109.46918 * 272.42341 * 14 12 11 16 16 C 1.81401 * 102.99724 * 179.97438 * 15 14 12 17 17 C 1.53780 * 113.61125 * 204.99735 * 9 8 6 18 18 N 1.46499 * 109.46999 * 294.90649 * 5 3 2 19 19 C 1.36345 * 125.63578 * 299.43888 * 18 5 3 20 20 C 1.34855 * 108.21796 * 180.02562 * 19 18 5 21 21 C 1.40892 * 107.41845 * 0.02562 * 20 19 18 22 22 C 1.34856 * 107.41610 * 359.73658 * 21 20 19 23 23 C 1.50696 * 125.89027 * 180.25504 * 22 21 20 24 24 O 1.42896 * 109.47118 * 137.76846 * 23 22 21 25 25 Si 1.86305 * 109.47224 * 17.76609 * 23 22 21 26 26 H 1.09002 * 109.47443 * 50.01408 * 1 2 3 27 27 H 1.09001 * 109.47289 * 170.01283 * 1 2 3 28 28 H 1.09005 * 109.47092 * 290.00952 * 1 2 3 29 29 H 1.09006 * 109.46889 * 240.00948 * 2 1 3 30 30 H 1.08994 * 109.47655 * 120.00684 * 2 1 3 31 31 H 1.09003 * 109.46516 * 51.26508 * 3 2 1 32 32 H 1.08997 * 109.46871 * 165.63655 * 4 3 2 33 33 H 1.08991 * 109.47355 * 285.64079 * 4 3 2 34 34 H 1.09008 * 109.46621 * 45.63917 * 4 3 2 35 35 H 1.09003 * 109.47203 * 54.90349 * 5 3 2 36 36 H 0.97001 * 119.99505 * 354.93574 * 8 6 5 37 37 H 1.09002 * 113.61400 * 254.53610 * 11 9 8 38 38 H 1.08999 * 113.61665 * 25.35867 * 11 9 8 39 39 H 1.08998 * 109.47127 * 32.41832 * 14 12 11 40 40 H 1.08991 * 109.47155 * 152.42311 * 14 12 11 41 41 H 1.08996 * 109.47228 * 60.00023 * 16 15 14 42 42 H 1.09000 * 109.46840 * 180.02562 * 16 15 14 43 43 H 1.09000 * 109.46879 * 299.99657 * 16 15 14 44 44 H 1.08997 * 113.61549 * 334.48086 * 17 9 8 45 45 H 1.09005 * 113.61728 * 105.30254 * 17 9 8 46 46 H 1.08000 * 125.89020 * 0.02562 * 19 18 5 47 47 H 1.08004 * 126.28754 * 179.97438 * 20 19 18 48 48 H 1.07997 * 126.28898 * 179.97438 * 21 20 19 49 49 H 1.09005 * 109.47177 * 257.76867 * 23 22 21 50 50 H 0.96693 * 114.00488 * 307.11120 * 24 23 22 51 51 H 1.48503 * 109.99787 * 179.97438 * 25 23 22 52 52 H 1.48493 * 109.99896 * 301.32256 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5542 1.4481 0.2191 5 6 1.7167 2.0978 -1.3442 6 6 2.1058 3.5530 -1.3002 7 8 2.9293 3.9844 -2.0790 8 7 1.5387 4.3752 -0.3951 9 6 1.9957 5.7621 -0.2777 10 1 3.0144 5.9040 -0.6383 11 6 0.9967 6.7908 -0.8331 12 6 1.3577 7.6762 0.3749 13 1 2.2025 8.3405 0.1923 14 6 0.1562 8.3959 0.9906 15 16 -0.1052 9.9751 0.1369 16 6 -1.5467 10.6679 0.9930 17 6 1.7408 6.3794 1.1074 18 7 2.4651 1.4242 -2.4083 19 6 3.8233 1.3395 -2.4932 20 6 4.1336 0.6462 -3.6074 21 6 2.9228 0.2903 -4.2337 22 6 1.9185 0.7747 -3.4752 23 6 0.4460 0.6266 -3.7597 24 8 -0.2451 0.3216 -2.5467 25 14 0.1859 -0.7515 -4.9861 26 1 -0.3634 0.6604 -0.7874 27 1 -0.3634 -1.0121 -0.1782 28 1 -0.3633 0.3517 0.9657 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.5548 1.9993 0.8017 32 1 3.9539 2.4308 -0.0312 33 1 3.7711 1.2228 1.2632 34 1 4.0163 0.6946 -0.4187 35 1 0.6481 2.0132 -1.5420 36 1 0.8279 4.0485 0.1785 37 1 1.2954 7.2164 -1.7912 38 1 -0.0364 6.4432 -0.8281 39 1 -0.7329 7.7744 0.8851 40 1 0.3465 8.5815 2.0477 41 1 -1.3142 10.7966 2.0501 42 1 -1.7991 11.6340 0.5559 43 1 -2.3930 9.9892 0.8871 44 1 0.9111 5.9199 1.6444 45 1 2.6401 6.4715 1.7167 46 1 4.5288 1.7558 -1.7894 47 1 5.1278 0.4082 -3.9560 48 1 2.8182 -0.2709 -5.1504 49 1 0.0603 1.5585 -4.1732 50 1 0.1182 -0.4349 -2.0665 51 1 -1.2624 -0.9080 -5.2745 52 1 0.9258 -0.4614 -6.2405 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:29:15 Heat of formation + Delta-G solvation = 23.155764 kcal Electronic energy + Delta-G solvation = -31186.808400 eV Core-core repulsion = 27281.658319 eV Total energy + Delta-G solvation = -3905.150081 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.181 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.92708 -41.14763 -39.59093 -38.13180 -37.42828 -34.90679 -33.03534 -31.28481 -30.96900 -30.66034 -29.69734 -28.13572 -26.76575 -25.91909 -24.84199 -23.81365 -22.08012 -21.68413 -21.46500 -20.86038 -20.21999 -18.91018 -18.05821 -17.73290 -17.11717 -16.90630 -16.73831 -16.50408 -16.23558 -15.91213 -15.41437 -15.40191 -15.15382 -14.76834 -14.67692 -14.49549 -14.37945 -14.26262 -14.19857 -14.00676 -13.82886 -13.71124 -13.49417 -13.49035 -13.43314 -13.18201 -12.95419 -12.80752 -12.22814 -12.19845 -12.14177 -11.97921 -11.78893 -11.74115 -11.62323 -11.52868 -11.46359 -11.01973 -10.91921 -10.46496 -10.16872 -9.54362 -8.92864 -8.74427 -4.94382 0.70140 1.09367 1.26091 1.34292 1.65361 1.67826 1.81114 2.01848 2.08774 2.24143 3.28366 3.35911 3.39148 3.49724 3.55068 3.62362 3.68140 3.73340 3.80996 3.96383 4.16718 4.19623 4.26733 4.27471 4.28761 4.31009 4.39253 4.44224 4.49579 4.53873 4.62363 4.66893 4.67383 4.68952 4.71561 4.76502 4.78263 4.84223 4.91242 4.93543 4.99654 5.09434 5.16520 5.21506 5.27846 5.30213 5.34532 5.37550 5.47808 5.66446 6.02315 6.24957 6.26780 6.47166 6.57426 7.03833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 C -0.086 4.086 4 C -0.162 4.162 5 C 0.113 3.887 6 C 0.502 3.498 7 O -0.567 6.567 8 N -0.698 5.698 9 C 0.120 3.880 10 H 0.091 0.909 11 C -0.143 4.143 12 C -0.090 4.090 13 H 0.090 0.910 14 C -0.055 4.055 15 S -0.333 6.333 16 C -0.110 4.110 17 C -0.113 4.113 18 N -0.409 5.409 19 C 0.012 3.988 20 C -0.223 4.223 21 C -0.203 4.203 22 C -0.024 4.024 23 C -0.054 4.054 24 O -0.543 6.543 25 Si 0.800 3.200 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.150 0.850 36 H 0.418 0.582 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.087 0.913 46 H 0.163 0.837 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.101 0.899 50 H 0.392 0.608 51 H -0.287 1.287 52 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -3.634 9.054 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.154 4.154 3 C -0.105 4.105 4 C -0.219 4.219 5 C 0.007 3.993 6 C 0.288 3.712 7 O -0.445 6.445 8 N -0.351 5.351 9 C 0.015 3.985 10 H 0.109 0.891 11 C -0.182 4.182 12 C -0.110 4.110 13 H 0.109 0.891 14 C -0.203 4.203 15 S -0.108 6.108 16 C -0.278 4.278 17 C -0.153 4.153 18 N -0.085 5.085 19 C -0.119 4.119 20 C -0.247 4.247 21 C -0.228 4.228 22 C -0.135 4.135 23 C -0.163 4.163 24 O -0.355 6.355 25 Si 0.704 3.296 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.256 0.744 37 H 0.069 0.931 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.133 0.867 45 H 0.106 0.894 46 H 0.180 0.820 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.119 0.881 50 H 0.246 0.754 51 H -0.215 1.215 52 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -3.877 -2.425 7.007 8.367 hybrid contribution -0.355 0.646 0.784 1.076 sum -4.233 -1.780 7.791 9.044 Atomic orbital electron populations 1.22339 0.94474 1.03777 1.03561 1.21585 0.96917 0.93992 1.02892 1.21529 0.97444 0.98498 0.93005 1.22238 0.95123 1.01268 1.03274 1.21804 0.99748 0.88155 0.89600 1.21089 0.80986 0.88870 0.80273 1.90780 1.35180 1.77680 1.40851 1.45779 1.39684 1.11224 1.38368 1.22429 0.98451 0.79295 0.98323 0.89073 1.23578 1.00434 0.96289 0.97881 1.22079 0.97078 0.95190 0.96641 0.89143 1.23365 1.01457 0.93708 1.01795 1.87371 1.43287 1.26342 1.53760 1.23394 0.96722 1.04468 1.03210 1.23345 1.03690 0.93374 0.94893 1.43522 1.05379 1.40639 1.18968 1.22027 0.84128 1.04470 1.01231 1.21043 0.98802 1.07154 0.97695 1.20834 0.92212 1.07905 1.01867 1.20939 0.95676 1.04731 0.92161 1.24893 0.86175 1.08903 0.96364 1.86572 1.58916 1.54710 1.35323 0.93077 0.76841 0.84271 0.75392 0.89497 0.91365 0.91685 0.92241 0.90415 0.86975 0.94139 0.90551 0.91562 0.83329 0.74411 0.93093 0.88572 0.88711 0.88457 0.89415 0.87914 0.89545 0.86733 0.89396 0.81976 0.84191 0.83886 0.88138 0.75398 1.21467 1.22067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 1.72 7.93 71.98 0.57 2.29 16 2 C -0.12 0.87 5.06 30.59 0.15 1.03 16 3 C -0.09 0.53 2.14 -10.79 -0.02 0.50 16 4 C -0.16 0.51 7.47 71.98 0.54 1.05 16 5 C 0.11 -0.12 2.21 44.24 0.10 -0.02 16 6 C 0.50 1.64 5.90 87.66 0.52 2.16 16 7 O -0.57 -7.68 15.07 -3.03 -0.05 -7.72 16 8 N -0.70 2.53 5.17 -440.05 -2.27 0.26 16 9 C 0.12 -0.22 4.21 45.52 0.19 -0.03 16 10 H 0.09 0.35 7.53 -2.39 -0.02 0.34 16 11 C -0.14 0.13 7.44 31.21 0.23 0.36 16 12 C -0.09 0.31 3.67 -10.17 -0.04 0.27 16 13 H 0.09 -0.03 8.13 -2.38 -0.02 -0.05 16 14 C -0.06 0.23 5.78 71.98 0.42 0.65 16 15 S -0.33 -0.81 22.37 -56.49 -1.26 -2.07 16 16 C -0.11 0.34 10.76 113.37 1.22 1.56 16 17 C -0.11 0.86 7.38 31.12 0.23 1.09 16 18 N -0.41 -1.55 1.73 -491.52 -0.85 -2.40 16 19 C 0.01 0.08 7.55 83.21 0.63 0.71 16 20 C -0.22 -1.67 10.86 22.14 0.24 -1.43 16 21 C -0.20 -1.27 9.39 22.14 0.21 -1.07 16 22 C -0.02 -0.10 6.13 41.08 0.25 0.15 16 23 C -0.05 -0.04 2.72 71.23 0.19 0.16 16 24 O -0.54 1.71 8.09 -148.98 -1.21 0.51 16 25 Si 0.80 -0.43 30.99 68.60 2.13 1.70 16 26 H 0.09 -0.69 3.52 -1.83 -0.01 -0.69 16 27 H 0.07 -0.68 7.88 -2.39 -0.02 -0.69 16 28 H 0.06 -0.65 8.14 -2.38 -0.02 -0.67 16 29 H 0.06 -0.29 6.92 -2.38 -0.02 -0.31 16 30 H 0.08 -0.62 8.12 -2.39 -0.02 -0.64 16 31 H 0.11 -1.18 7.53 -2.39 -0.02 -1.20 16 32 H 0.04 0.03 6.36 -2.39 -0.02 0.01 16 33 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.07 -0.06 5.73 -2.38 -0.01 -0.07 16 35 H 0.15 -0.41 4.64 -2.39 -0.01 -0.42 16 36 H 0.42 -4.36 8.27 -92.71 -0.77 -5.12 16 37 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.10 -0.26 7.91 -2.39 -0.02 -0.28 16 39 H 0.09 -0.60 7.85 -2.39 -0.02 -0.62 16 40 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 41 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.10 -0.34 8.14 -2.39 -0.02 -0.35 16 43 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 44 H 0.11 -1.39 8.08 -2.39 -0.02 -1.41 16 45 H 0.09 -0.70 8.14 -2.38 -0.02 -0.72 16 46 H 0.16 0.95 5.73 -2.91 -0.02 0.93 16 47 H 0.14 0.75 8.06 -2.91 -0.02 0.73 16 48 H 0.14 0.60 6.36 -2.91 -0.02 0.59 16 49 H 0.10 0.27 7.96 -2.38 -0.02 0.25 16 50 H 0.39 -2.93 5.24 -72.52 -0.38 -3.31 16 51 H -0.29 -1.38 7.11 99.48 0.71 -0.67 16 52 H -0.29 -1.69 6.93 99.48 0.69 -1.00 16 Total: 0.00 -19.40 401.03 1.92 -17.48 By element: Atomic # 1 Polarization: -16.98 SS G_CDS: -0.20 Total: -17.18 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.63 Total: 9.43 kcal Atomic # 7 Polarization: 0.98 SS G_CDS: -3.12 Total: -2.14 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -1.25 Total: -7.22 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.13 Total: 1.70 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -1.26 Total: -2.07 kcal Total: -19.40 1.92 -17.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.635 kcal (2) G-P(sol) polarization free energy of solvation -19.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds