Wall clock time and date at job start Sun Mar 7 2021 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81399 * 102.99758 * 2 1 4 4 C 1.53007 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.08995 * 112.84566 * 43.80371 * 4 3 2 6 6 C 1.53784 * 113.61103 * 175.00332 * 4 3 2 7 7 C 1.53778 * 87.07848 * 139.98475 * 6 4 3 8 8 H 1.08995 * 113.62178 * 89.19655 * 7 6 4 9 9 N 1.46508 * 113.61074 * 220.01625 * 7 6 4 10 10 C 1.34778 * 119.99706 * 204.99477 * 9 7 6 11 11 O 1.21278 * 120.00050 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99741 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47233 * 185.55759 * 12 10 9 14 14 C 1.39313 * 120.06339 * 79.90342 * 13 12 10 15 15 C 1.48398 * 120.11945 * 0.04836 * 14 13 12 16 16 C 1.39336 * 120.11905 * 236.45601 * 15 14 13 17 17 C 1.38014 * 119.87539 * 179.78726 * 16 15 14 18 18 C 1.38327 * 120.12256 * 0.48942 * 17 16 15 19 19 C 1.50698 * 119.87861 * 179.76300 * 18 17 16 20 20 O 1.42899 * 109.47205 * 244.97942 * 19 18 17 21 21 Si 1.86302 * 109.47340 * 4.97988 * 19 18 17 22 22 C 1.38323 * 120.24240 * 359.74357 * 18 17 16 23 23 C 1.38021 * 120.11904 * 0.02562 * 22 18 17 24 24 C 1.39355 * 119.76018 * 180.02562 * 14 13 12 25 25 C 1.37991 * 119.87800 * 359.97438 * 24 14 13 26 26 C 1.38342 * 120.12350 * 0.02562 * 25 24 14 27 27 C 1.38048 * 120.06077 * 259.93179 * 13 12 10 28 28 C 1.53783 * 113.61297 * 272.50078 * 4 3 2 29 29 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47791 * 299.99950 * 1 2 3 31 31 H 1.09000 * 109.46723 * 60.00368 * 1 2 3 32 32 H 1.09003 * 109.46886 * 60.00057 * 3 2 1 33 33 H 1.08994 * 109.47627 * 300.00121 * 3 2 1 34 34 H 1.09001 * 113.61518 * 25.43204 * 6 4 3 35 35 H 1.08996 * 113.60993 * 254.52802 * 6 4 3 36 36 H 0.97003 * 119.99806 * 25.00191 * 9 7 6 37 37 H 1.09001 * 109.46954 * 65.55602 * 12 10 9 38 38 H 1.08996 * 109.47069 * 305.56158 * 12 10 9 39 39 H 1.08002 * 120.06184 * 0.02834 * 16 15 14 40 40 H 1.08001 * 119.93873 * 180.23564 * 17 16 15 41 41 H 1.09004 * 109.47103 * 124.98090 * 19 18 17 42 42 H 0.96706 * 113.99985 * 60.00365 * 20 19 18 43 43 H 1.48505 * 109.99951 * 58.68123 * 21 19 18 44 44 H 1.48497 * 110.00339 * 179.97438 * 21 19 18 45 45 H 1.07990 * 119.93735 * 179.97438 * 22 18 17 46 46 H 1.07994 * 120.06010 * 179.97438 * 23 22 18 47 47 H 1.07999 * 120.06058 * 179.97438 * 24 14 13 48 48 H 1.08003 * 119.94011 * 180.02562 * 25 24 14 49 49 H 1.07996 * 119.88159 * 180.27545 * 26 25 24 50 50 H 1.07994 * 119.93747 * 359.96968 * 27 13 12 51 51 H 1.08992 * 113.61822 * 105.47080 * 28 4 3 52 52 H 1.09004 * 113.61539 * 334.56264 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2448 1.2673 -0.6943 6 6 4.1962 3.4042 -0.1220 7 6 5.2867 3.0703 0.9095 8 1 6.2130 2.7078 0.4640 9 7 5.5068 4.1317 1.8952 10 6 6.6975 4.2367 2.5178 11 8 7.5869 3.4529 2.2618 12 6 6.9241 5.3288 3.5312 13 6 8.3643 5.3118 3.9745 14 6 9.3469 5.8941 3.1769 15 6 8.9786 6.5336 1.8894 16 6 9.5787 6.1146 0.7038 17 6 9.2292 6.7098 -0.4913 18 6 8.2925 7.7275 -0.5123 19 6 7.9189 8.3772 -1.8197 20 8 8.3265 9.7468 -1.8046 21 14 8.7712 7.4911 -3.2194 22 6 7.6973 8.1507 0.6624 23 6 8.0358 7.5592 1.8626 24 6 10.6768 5.8744 3.5927 25 6 11.0135 5.2793 4.7913 26 6 10.0337 4.7025 5.5795 27 6 8.7124 4.7187 5.1715 28 6 4.3607 1.9485 1.4086 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8030 2.2371 0.8900 33 1 1.8031 2.2372 -0.8899 34 1 3.4589 4.1215 0.2385 35 1 4.5894 3.6583 -1.1063 36 1 4.7955 4.7587 2.0997 37 1 6.2767 5.1649 4.3928 38 1 6.6935 6.2948 3.0821 39 1 10.3131 5.3229 0.7195 40 1 9.6909 6.3832 -1.4115 41 1 6.8392 8.3210 -1.9579 42 1 9.2779 9.8728 -1.6850 43 1 8.3802 6.0585 -3.2265 44 1 8.4104 8.1219 -4.5145 45 1 6.9669 8.9459 0.6405 46 1 7.5708 7.8907 2.7792 47 1 11.4425 6.3240 2.9780 48 1 12.0439 5.2637 5.1147 49 1 10.3010 4.2417 6.5189 50 1 7.9515 4.2670 5.7906 51 1 4.8867 1.0276 1.6601 52 1 3.6685 2.2680 2.1877 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_13158394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:29:50 Heat of formation + Delta-G solvation = 11.045419 kcal Electronic energy + Delta-G solvation = -32867.861439 eV Core-core repulsion = 28697.556661 eV Total energy + Delta-G solvation = -4170.304778 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.155 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.59690 -40.83262 -39.86003 -39.14201 -37.53613 -34.81834 -34.24745 -33.40050 -31.98057 -30.84306 -30.62658 -29.71242 -28.58279 -26.76374 -26.57528 -24.28623 -23.89309 -23.34230 -22.50248 -21.74448 -21.39718 -20.57481 -18.54424 -18.08061 -17.96127 -17.67723 -17.03445 -16.96251 -16.66342 -16.41775 -16.31530 -16.15010 -15.77098 -15.59475 -15.47795 -15.20920 -15.00909 -14.76487 -14.70531 -14.49394 -14.26200 -14.16139 -14.07911 -13.80946 -13.65338 -13.49062 -13.42166 -13.36168 -13.25559 -13.07954 -12.77746 -12.38265 -12.25951 -12.17746 -12.03941 -11.85050 -11.68781 -11.60322 -11.51403 -10.94163 -10.90916 -10.45929 -10.14869 -10.03597 -9.94213 -9.73384 -9.21891 -8.74354 -5.03715 -0.08949 0.38735 0.41379 0.61476 0.69812 1.29054 1.59756 1.63398 1.65094 1.91587 2.20388 2.63093 2.88741 3.39215 3.47876 3.50993 3.57852 3.66908 3.68057 3.75247 3.76383 3.89847 3.94636 3.98010 4.03237 4.18976 4.22543 4.27264 4.28932 4.30853 4.31590 4.37524 4.47400 4.49441 4.52844 4.53617 4.61738 4.67150 4.69844 4.73905 4.75800 4.84145 4.86772 4.96550 4.98432 4.99416 5.02797 5.10360 5.24411 5.34670 5.41947 5.48078 5.53549 5.56145 5.58947 5.66242 5.93817 6.05935 6.55538 6.75339 7.27632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.329 6.329 3 C -0.056 4.056 4 C -0.090 4.090 5 H 0.088 0.912 6 C -0.119 4.119 7 C 0.120 3.880 8 H 0.086 0.914 9 N -0.709 5.709 10 C 0.516 3.484 11 O -0.574 6.574 12 C -0.109 4.109 13 C -0.065 4.065 14 C -0.050 4.050 15 C -0.041 4.041 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.063 4.063 20 O -0.553 6.553 21 Si 0.758 3.242 22 C -0.092 4.092 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.138 4.138 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.416 0.584 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.395 0.605 43 H -0.293 1.293 44 H -0.296 1.296 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.137 0.863 51 H 0.054 0.946 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 4.483 2.062 5.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.104 6.104 3 C -0.204 4.204 4 C -0.110 4.110 5 H 0.107 0.893 6 C -0.159 4.159 7 C 0.015 3.985 8 H 0.104 0.896 9 N -0.361 5.361 10 C 0.304 3.696 11 O -0.453 6.453 12 C -0.148 4.148 13 C -0.066 4.066 14 C -0.050 4.050 15 C -0.041 4.041 16 C -0.127 4.127 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.174 4.174 20 O -0.361 6.361 21 Si 0.665 3.335 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.176 4.176 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.096 0.904 36 H 0.253 0.747 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.129 0.871 42 H 0.245 0.755 43 H -0.220 1.220 44 H -0.224 1.224 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.155 0.845 51 H 0.073 0.927 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.535 2.687 1.059 3.843 hybrid contribution -1.376 0.701 0.322 1.578 sum -3.911 3.389 1.381 5.356 Atomic orbital electron populations 1.23399 0.91435 1.07194 1.05818 1.87337 1.10535 1.14289 1.98201 1.23362 0.98643 0.92358 1.06008 1.22030 0.92849 0.97949 0.98195 0.89344 1.23354 0.97252 0.95877 0.99391 1.22328 0.97571 0.88551 0.90062 0.89559 1.45854 1.14941 1.33373 1.41916 1.20906 0.81843 0.85262 0.81603 1.90719 1.44260 1.45009 1.65293 1.20925 0.94774 0.99415 0.99677 1.19464 0.94215 0.98386 0.94518 1.18744 0.93607 0.99188 0.93510 1.18862 0.97073 0.96154 0.92052 1.21234 0.99987 0.99577 0.91897 1.21050 0.97804 0.96513 0.97935 1.20414 0.97952 0.97382 0.96388 1.24999 1.04144 0.87571 1.00702 1.86468 1.31072 1.22626 1.95892 0.93789 0.89948 0.75282 0.74494 1.21070 0.99445 0.99186 0.91250 1.21377 0.97327 0.95612 0.98805 1.21379 0.95221 0.99843 0.97174 1.21375 1.00539 0.97901 0.94593 1.21479 0.92959 0.99310 1.00634 1.21227 0.97327 0.98951 0.96217 1.23501 0.98544 0.98584 0.97011 0.87806 0.89461 0.89574 0.88588 0.88830 0.86946 0.90401 0.74659 0.85311 0.85859 0.86139 0.84453 0.87129 0.75513 1.22002 1.22371 0.84457 0.83997 0.85080 0.84214 0.84277 0.84534 0.92721 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.30 10.76 113.37 1.22 1.52 16 2 S -0.33 -0.95 22.37 -56.49 -1.26 -2.22 16 3 C -0.06 0.17 5.78 71.98 0.42 0.58 16 4 C -0.09 0.17 3.66 -10.26 -0.04 0.13 16 5 H 0.09 0.12 8.13 -2.39 -0.02 0.10 16 6 C -0.12 0.56 7.39 31.12 0.23 0.79 16 7 C 0.12 0.03 4.24 45.52 0.19 0.22 16 8 H 0.09 0.58 7.46 -2.39 -0.02 0.56 16 9 N -0.71 1.38 5.36 -440.02 -2.36 -0.97 16 10 C 0.52 1.99 7.59 87.66 0.67 2.66 16 11 O -0.57 -7.94 15.63 -3.02 -0.05 -7.99 16 12 C -0.11 0.18 5.31 29.10 0.15 0.33 16 13 C -0.07 -0.23 4.40 -19.65 -0.09 -0.32 16 14 C -0.05 -0.24 5.37 -20.04 -0.11 -0.35 16 15 C -0.04 -0.14 4.72 -20.04 -0.09 -0.23 16 16 C -0.11 -0.42 9.62 22.48 0.22 -0.21 16 17 C -0.12 -0.12 8.65 22.24 0.19 0.07 16 18 C -0.12 0.00 5.36 -19.82 -0.11 -0.11 16 19 C -0.06 0.06 2.80 71.24 0.20 0.26 16 20 O -0.55 0.31 12.83 -148.98 -1.91 -1.61 16 21 Si 0.76 -0.71 29.79 68.60 2.04 1.34 16 22 C -0.09 0.06 9.67 22.24 0.21 0.27 16 23 C -0.11 0.03 7.84 22.48 0.18 0.21 16 24 C -0.12 -0.49 9.62 22.48 0.22 -0.28 16 25 C -0.13 -0.36 10.03 22.24 0.22 -0.14 16 26 C -0.13 -0.33 10.04 22.31 0.22 -0.11 16 27 C -0.12 -0.36 9.66 22.24 0.21 -0.14 16 28 C -0.14 0.04 7.43 31.12 0.23 0.27 16 29 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.09 -0.39 8.14 -2.39 -0.02 -0.40 16 32 H 0.10 -0.53 7.84 -2.39 -0.02 -0.54 16 33 H 0.09 -0.44 8.14 -2.39 -0.02 -0.45 16 34 H 0.11 -1.02 8.08 -2.39 -0.02 -1.04 16 35 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.42 -3.65 8.73 -92.71 -0.81 -4.46 16 37 H 0.13 -0.90 8.00 -2.39 -0.02 -0.92 16 38 H 0.12 -0.64 4.88 -2.39 -0.01 -0.66 16 39 H 0.12 0.54 8.06 -2.91 -0.02 0.51 16 40 H 0.14 -0.31 4.89 -2.91 -0.01 -0.32 16 41 H 0.11 -0.07 7.96 -2.39 -0.02 -0.09 16 42 H 0.39 -3.16 8.70 -74.05 -0.64 -3.81 16 43 H -0.29 -1.45 7.11 99.48 0.71 -0.74 16 44 H -0.30 -1.79 7.11 99.48 0.71 -1.09 16 45 H 0.14 -0.39 8.06 -2.92 -0.02 -0.42 16 46 H 0.14 -0.56 7.09 -2.91 -0.02 -0.58 16 47 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 48 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 49 H 0.14 -0.21 8.06 -2.91 -0.02 -0.23 16 50 H 0.14 -0.13 8.03 -2.91 -0.02 -0.15 16 51 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 52 H 0.10 -0.27 7.90 -2.39 -0.02 -0.29 16 Total: 0.00 -22.46 436.96 0.54 -21.92 By element: Atomic # 1 Polarization: -15.43 SS G_CDS: -0.48 Total: -15.90 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.56 Total: 5.43 kcal Atomic # 7 Polarization: 1.38 SS G_CDS: -2.36 Total: -0.97 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.96 Total: -9.59 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.04 Total: 1.34 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -1.26 Total: -2.22 kcal Total: -22.46 0.54 -21.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_13158394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.965 kcal (2) G-P(sol) polarization free energy of solvation -22.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds