Wall clock time and date at job start Sun Mar 7 2021 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00288 * 2 1 4 4 C 1.52996 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.08995 * 112.84837 * 316.19102 * 4 3 2 6 6 C 1.53777 * 113.61553 * 87.50731 * 4 3 2 7 7 C 1.53774 * 87.08178 * 139.97906 * 6 4 3 8 8 H 1.09001 * 113.69016 * 89.12830 * 7 6 4 9 9 N 1.46506 * 113.61016 * 220.01422 * 7 6 4 10 10 C 1.34773 * 119.99968 * 252.49438 * 9 7 6 11 11 O 1.21283 * 120.00360 * 359.73034 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 O 1.42894 * 109.47263 * 179.72605 * 12 10 9 14 14 C 1.35898 * 116.99879 * 179.97438 * 13 12 10 15 15 C 1.38734 * 120.05666 * 359.72678 * 14 13 12 16 16 C 1.38146 * 119.94191 * 179.74570 * 15 14 13 17 17 C 1.38261 * 120.05911 * 0.50524 * 16 15 14 18 18 C 1.50694 * 119.94688 * 179.74522 * 17 16 15 19 19 O 1.42901 * 109.47172 * 120.02723 * 18 17 16 20 20 Si 1.86296 * 109.47134 * 0.02562 * 18 17 16 21 21 C 1.38271 * 120.10839 * 359.77152 * 17 16 15 22 22 C 1.38144 * 120.05655 * 359.97438 * 21 17 16 23 23 C 1.53773 * 87.08241 * 334.56489 * 7 6 4 24 24 H 1.09005 * 109.47449 * 59.99893 * 1 2 3 25 25 H 1.09004 * 109.47452 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47437 * 300.00049 * 1 2 3 27 27 H 1.09003 * 109.46665 * 59.99762 * 3 2 1 28 28 H 1.09000 * 109.46837 * 300.00481 * 3 2 1 29 29 H 1.08997 * 113.62021 * 25.42099 * 6 4 3 30 30 H 1.09005 * 113.60822 * 254.52763 * 6 4 3 31 31 H 0.96998 * 119.99507 * 72.50293 * 9 7 6 32 32 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 33 33 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 34 34 H 1.08002 * 120.02646 * 359.97438 * 15 14 13 35 35 H 1.08001 * 119.96800 * 180.22932 * 16 15 14 36 36 H 1.08998 * 109.47471 * 240.02280 * 18 17 16 37 37 H 0.96711 * 113.99575 * 299.99662 * 19 18 17 38 38 H 1.48498 * 110.00381 * 58.67926 * 20 18 17 39 39 H 1.48499 * 110.00238 * 179.97438 * 20 18 17 40 40 H 1.08005 * 119.96796 * 179.97438 * 21 17 16 41 41 H 1.08003 * 120.02339 * 179.97438 * 22 21 17 42 42 H 1.09004 * 113.61475 * 139.98321 * 23 7 6 43 43 H 1.09007 * 113.61441 * 270.88416 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.2448 1.2672 0.6944 6 6 4.3607 1.9485 -1.4086 7 6 5.2867 3.0701 -0.9095 8 1 6.2131 2.7075 -0.4639 9 7 5.5069 4.1314 -1.8951 10 6 6.6976 4.2365 -2.5177 11 8 7.5885 3.4555 -2.2584 12 6 6.9242 5.3286 -3.5312 13 8 8.2554 5.2353 -4.0423 14 6 8.6242 6.1533 -4.9740 15 6 7.7217 7.1205 -5.3918 16 6 8.1008 8.0558 -6.3352 17 6 9.3752 8.0222 -6.8705 18 6 9.7842 9.0402 -7.9035 19 8 10.8998 9.7898 -7.4180 20 14 8.3594 10.1930 -8.2376 21 6 10.2747 7.0557 -6.4599 22 6 9.9022 6.1214 -5.5130 23 6 4.1963 3.4040 0.1221 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8032 2.2371 0.8900 28 1 1.8031 2.2371 -0.8900 29 1 3.6686 2.2678 -2.1876 30 1 4.8868 1.0275 -1.6600 31 1 4.7956 4.7585 -2.0995 32 1 6.2123 5.2185 -4.3492 33 1 6.7846 6.2997 -3.0563 34 1 6.7247 7.1445 -4.9773 35 1 7.3997 8.8112 -6.6580 36 1 10.0629 8.5303 -8.8257 37 1 10.7234 10.2708 -6.5977 38 1 7.9491 10.8708 -6.9816 39 1 8.7502 11.2023 -9.2544 40 1 11.2695 7.0313 -6.8798 41 1 10.6051 5.3665 -5.1929 42 1 4.5896 3.6581 1.1065 43 1 3.4591 4.1215 -0.2384 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:30:51 Heat of formation + Delta-G solvation = -48.832808 kcal Electronic energy + Delta-G solvation = -23803.562412 eV Core-core repulsion = 20135.958727 eV Total energy + Delta-G solvation = -3667.603685 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.123 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.63145 -40.97354 -39.69290 -38.85399 -37.23233 -34.94715 -32.42235 -31.75187 -30.93276 -29.80010 -29.08828 -26.71591 -26.24980 -24.38878 -23.49039 -22.31730 -21.70329 -20.63833 -19.50571 -18.50037 -18.12980 -17.69526 -17.42237 -17.02467 -16.78803 -16.37927 -16.28786 -16.12231 -15.70606 -15.55586 -15.14073 -15.06866 -14.67631 -14.61614 -14.37002 -14.22558 -13.81863 -13.74399 -13.53857 -13.43978 -13.43090 -13.38859 -12.90810 -12.30065 -12.16689 -12.10878 -12.04788 -11.63140 -11.57335 -11.48399 -10.96417 -10.87248 -10.58761 -10.13394 -10.03477 -9.23255 -8.70071 -4.90174 0.27482 0.31164 0.74399 1.34494 1.42337 1.50386 1.62127 1.69723 1.99485 2.61091 2.65229 3.41713 3.44297 3.52285 3.55417 3.72580 3.74491 3.78315 3.83369 3.94935 4.03830 4.11048 4.24646 4.31187 4.31434 4.32658 4.35201 4.43036 4.54697 4.56438 4.69627 4.72799 4.76562 4.82330 4.88016 4.97605 4.99257 5.05337 5.16205 5.20969 5.25753 5.49618 5.52867 5.70283 6.27012 6.47989 6.51032 7.13432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.333 6.333 3 C -0.056 4.056 4 C -0.092 4.092 5 H 0.089 0.911 6 C -0.141 4.141 7 C 0.117 3.883 8 H 0.090 0.910 9 N -0.697 5.697 10 C 0.511 3.489 11 O -0.576 6.576 12 C 0.036 3.964 13 O -0.321 6.321 14 C 0.121 3.879 15 C -0.199 4.199 16 C -0.075 4.075 17 C -0.159 4.159 18 C -0.083 4.083 19 O -0.552 6.552 20 Si 0.773 3.227 21 C -0.061 4.061 22 C -0.168 4.168 23 C -0.115 4.115 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.423 0.577 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.166 0.834 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.386 0.614 38 H -0.278 1.278 39 H -0.308 1.308 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 4.532 0.095 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.107 6.107 3 C -0.203 4.203 4 C -0.112 4.112 5 H 0.107 0.893 6 C -0.180 4.180 7 C 0.012 3.988 8 H 0.108 0.892 9 N -0.350 5.350 10 C 0.298 3.702 11 O -0.455 6.455 12 C -0.041 4.041 13 O -0.235 6.235 14 C 0.075 3.925 15 C -0.218 4.218 16 C -0.092 4.092 17 C -0.159 4.159 18 C -0.191 4.191 19 O -0.360 6.360 20 Si 0.678 3.322 21 C -0.079 4.079 22 C -0.186 4.186 23 C -0.155 4.155 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.262 0.738 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.139 0.861 37 H 0.235 0.765 38 H -0.204 1.204 39 H -0.237 1.237 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.968 3.494 -0.135 9.626 hybrid contribution 0.037 1.175 0.840 1.444 sum -8.931 4.669 0.705 10.103 Atomic orbital electron populations 1.23394 0.91479 1.07120 1.05835 1.87375 1.10504 1.14616 1.98208 1.23375 0.98663 0.92143 1.06161 1.22040 0.92837 0.98271 0.98074 0.89279 1.23541 0.98578 0.98557 0.97278 1.22461 0.98049 0.88329 0.89992 0.89185 1.45648 1.14180 1.33615 1.41593 1.20654 0.82595 0.85139 0.81843 1.90768 1.44571 1.45081 1.65067 1.22774 0.84047 0.99378 0.97933 1.86133 1.31711 1.51350 1.54261 1.19224 0.94359 0.89348 0.89524 1.21506 1.01156 0.96880 1.02211 1.21071 0.95185 0.98152 0.94826 1.20296 0.95252 0.99122 1.01270 1.25257 0.98542 0.97317 0.98028 1.86572 1.37309 1.66008 1.46107 0.94143 0.80768 0.78844 0.78432 1.20902 0.99763 0.92466 0.94735 1.20620 0.95169 1.02327 1.00509 1.23365 0.96902 0.95731 0.99460 0.89437 0.87968 0.89541 0.88651 0.88442 0.87991 0.92787 0.73832 0.85349 0.85528 0.81631 0.82851 0.86142 0.76529 1.20407 1.23670 0.84958 0.85724 0.89729 0.86493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.44 10.76 113.37 1.22 1.66 16 2 S -0.33 -0.48 22.37 -56.49 -1.26 -1.74 16 3 C -0.06 0.29 5.78 71.98 0.42 0.71 16 4 C -0.09 0.41 3.66 -10.27 -0.04 0.37 16 5 H 0.09 -0.09 8.13 -2.39 -0.02 -0.11 16 6 C -0.14 0.38 7.43 31.12 0.23 0.61 16 7 C 0.12 -0.32 4.24 45.51 0.19 -0.13 16 8 H 0.09 0.33 7.46 -2.39 -0.02 0.31 16 9 N -0.70 3.92 5.35 -440.04 -2.36 1.56 16 10 C 0.51 1.07 7.91 87.66 0.69 1.76 16 11 O -0.58 -8.48 16.10 16.00 0.26 -8.23 16 12 C 0.04 -0.15 5.22 71.24 0.37 0.22 16 13 O -0.32 -1.79 9.67 -73.37 -0.71 -2.50 16 14 C 0.12 0.36 6.69 22.51 0.15 0.51 16 15 C -0.20 0.68 9.04 22.37 0.20 0.88 16 16 C -0.08 0.26 8.66 22.25 0.19 0.46 16 17 C -0.16 0.04 5.39 -19.85 -0.11 -0.07 16 18 C -0.08 0.08 2.82 71.23 0.20 0.28 16 19 O -0.55 -1.51 12.77 -148.98 -1.90 -3.42 16 20 Si 0.77 -2.73 29.78 68.60 2.04 -0.69 16 21 C -0.06 -0.16 9.60 22.26 0.21 0.05 16 22 C -0.17 -0.81 9.99 22.37 0.22 -0.59 16 23 C -0.11 0.96 7.39 31.12 0.23 1.19 16 24 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.09 -0.68 8.14 -2.39 -0.02 -0.69 16 28 H 0.10 -0.78 7.84 -2.39 -0.02 -0.80 16 29 H 0.10 -0.56 7.89 -2.39 -0.02 -0.58 16 30 H 0.05 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.42 -5.98 8.73 -92.71 -0.81 -6.79 16 32 H 0.13 -1.43 7.65 -2.39 -0.02 -1.45 16 33 H 0.13 -1.39 7.68 -2.39 -0.02 -1.40 16 34 H 0.17 -1.83 6.30 -2.91 -0.02 -1.85 16 35 H 0.15 -1.34 4.87 -2.91 -0.01 -1.36 16 36 H 0.12 -0.24 7.96 -2.39 -0.02 -0.26 16 37 H 0.39 -1.13 8.70 -74.05 -0.64 -1.78 16 38 H -0.28 0.19 7.11 99.48 0.71 0.90 16 39 H -0.31 -1.54 7.11 99.48 0.71 -0.84 16 40 H 0.13 0.26 8.06 -2.91 -0.02 0.24 16 41 H 0.12 0.70 8.06 -2.91 -0.02 0.68 16 42 H 0.08 -0.68 8.14 -2.38 -0.02 -0.69 16 43 H 0.12 -1.56 8.08 -2.38 -0.02 -1.58 16 Total: 0.00 -26.61 371.08 0.08 -26.54 By element: Atomic # 1 Polarization: -19.04 SS G_CDS: -0.39 Total: -19.43 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 4.39 Total: 7.90 kcal Atomic # 7 Polarization: 3.92 SS G_CDS: -2.36 Total: 1.56 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -2.35 Total: -14.15 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.04 Total: -0.69 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -1.26 Total: -1.74 kcal Total: -26.61 0.08 -26.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.298 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds