Wall clock time and date at job start Sun Mar 7 2021 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81397 * 103.00239 * 2 1 4 4 C 1.53002 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.84937 * 316.19884 * 4 3 2 6 6 C 1.53784 * 113.69173 * 87.46635 * 4 3 2 7 7 C 1.53777 * 87.08257 * 139.98997 * 6 4 3 8 8 H 1.09006 * 113.68511 * 89.12721 * 7 6 4 9 9 N 1.46501 * 113.61462 * 220.01932 * 7 6 4 10 10 C 1.34777 * 119.99574 * 252.49755 * 9 7 6 11 11 O 1.21280 * 120.00299 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99673 * 180.02562 * 10 9 7 13 13 C 1.53001 * 109.47093 * 180.02562 * 12 10 9 14 14 O 1.42904 * 109.46852 * 179.97438 * 13 12 10 15 15 C 1.35897 * 116.99794 * 180.02562 * 14 13 12 16 16 C 1.38731 * 120.05696 * 359.97438 * 15 14 13 17 17 C 1.38150 * 119.94616 * 179.97438 * 16 15 14 18 18 C 1.38265 * 120.05296 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.94041 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47164 * 300.00183 * 19 18 17 21 21 Si 1.86296 * 109.46726 * 179.97438 * 19 18 17 22 22 C 1.38264 * 120.11373 * 0.02562 * 18 17 16 23 23 C 1.38147 * 120.05455 * 359.97438 * 22 18 17 24 24 C 1.53780 * 113.61397 * 185.00056 * 4 3 2 25 25 H 1.09003 * 109.47229 * 59.99840 * 1 2 3 26 26 H 1.09000 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46874 * 299.99879 * 1 2 3 28 28 H 1.08998 * 109.47063 * 60.00327 * 3 2 1 29 29 H 1.09003 * 109.47099 * 300.00016 * 3 2 1 30 30 H 1.08996 * 113.61133 * 25.43899 * 6 4 3 31 31 H 1.09003 * 113.61411 * 254.54459 * 6 4 3 32 32 H 0.96999 * 120.00067 * 72.49595 * 9 7 6 33 33 H 1.08999 * 109.47407 * 59.99905 * 12 10 9 34 34 H 1.09006 * 109.46882 * 299.99754 * 12 10 9 35 35 H 1.09004 * 109.47253 * 60.00389 * 13 12 10 36 36 H 1.08997 * 109.47146 * 299.99886 * 13 12 10 37 37 H 1.08002 * 120.02802 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.97142 * 180.27626 * 17 16 15 39 39 H 1.08995 * 109.46898 * 59.99877 * 19 18 17 40 40 H 0.96701 * 113.99673 * 299.99813 * 20 19 18 41 41 H 1.48505 * 109.99969 * 180.02562 * 21 19 18 42 42 H 1.48497 * 110.00212 * 301.31794 * 21 19 18 43 43 H 1.07998 * 119.97093 * 179.97438 * 22 18 17 44 44 H 1.07998 * 120.02647 * 179.97438 * 23 22 18 45 45 H 1.09001 * 113.61635 * 105.38883 * 24 4 3 46 46 H 1.08996 * 113.61708 * 334.48389 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.2449 1.2671 0.6943 6 6 4.3628 1.9477 -1.4078 7 6 5.2882 3.0695 -0.9079 8 1 6.2139 2.7070 -0.4609 9 7 5.5098 4.1304 -1.8936 10 6 6.7014 4.2350 -2.5146 11 8 7.5901 3.4507 -2.2577 12 6 6.9296 5.3267 -3.5282 13 6 8.3531 5.2217 -4.0790 14 8 8.5692 6.2566 -5.0406 15 6 9.7926 6.3049 -5.6304 16 6 10.7652 5.3759 -5.2904 17 6 12.0078 5.4269 -5.8918 18 6 12.2827 6.4031 -6.8316 19 6 13.6394 6.4567 -7.4857 20 8 14.6429 6.6462 -6.4862 21 14 13.6903 7.8735 -8.6943 22 6 11.3155 7.3308 -7.1715 23 6 10.0713 7.2841 -6.5729 24 6 4.1964 3.4039 0.1221 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8033 2.2371 0.8900 29 1 1.8032 2.2371 -0.8900 30 1 3.6716 2.2669 -2.1878 31 1 4.8890 1.0265 -1.6581 32 1 4.7990 4.7575 -2.0994 33 1 6.7943 6.2981 -3.0527 34 1 6.2156 5.2192 -4.3448 35 1 8.4880 4.2503 -4.5548 36 1 9.0674 5.3289 -3.2627 37 1 10.5508 4.6129 -4.5567 38 1 12.7638 4.7011 -5.6307 39 1 13.8250 5.5217 -8.0142 40 1 14.5402 7.4606 -5.9751 41 1 15.0229 7.9369 -9.3467 42 1 12.6306 7.7039 -9.7206 43 1 11.5329 8.0926 -7.9055 44 1 9.3163 8.0092 -6.8384 45 1 4.5884 3.6585 1.1069 46 1 3.4598 4.1213 -0.2397 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:30:53 Heat of formation + Delta-G solvation = -57.822242 kcal Electronic energy + Delta-G solvation = -25352.634527 eV Core-core repulsion = 21529.103412 eV Total energy + Delta-G solvation = -3823.531115 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.138 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48641 -41.10203 -39.68172 -39.07096 -37.18563 -34.89220 -33.30986 -32.11361 -31.47363 -30.50827 -29.61179 -26.73336 -26.67107 -25.77041 -24.00776 -23.05211 -22.15281 -21.55545 -20.56690 -19.51345 -18.28960 -17.88899 -17.68669 -17.49009 -17.10291 -16.78682 -16.42146 -16.38022 -16.09954 -15.89884 -15.57704 -15.26317 -14.92939 -14.73896 -14.69184 -14.61407 -14.28505 -14.21532 -14.00287 -13.79191 -13.48062 -13.44803 -13.39592 -13.01647 -12.84891 -12.79186 -12.18020 -12.13223 -12.09893 -11.80886 -11.66143 -11.58010 -11.49438 -11.00746 -10.89285 -10.42057 -10.09240 -10.06318 -9.21742 -8.71834 -4.98789 0.24718 0.31567 0.72696 1.33678 1.49768 1.64295 1.67613 1.71432 1.97745 2.50048 2.64909 3.41911 3.53364 3.54393 3.56339 3.71110 3.72829 3.76720 3.82546 3.86752 3.89344 4.01538 4.22706 4.25318 4.29514 4.31025 4.33319 4.33564 4.41983 4.53183 4.54162 4.59790 4.67509 4.71581 4.74933 4.77688 4.80989 4.86301 4.98469 4.99052 5.04065 5.17811 5.23712 5.30744 5.47539 5.54625 5.68415 6.30156 6.47168 6.78077 7.16174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.331 6.331 3 C -0.056 4.056 4 C -0.092 4.092 5 H 0.090 0.910 6 C -0.141 4.141 7 C 0.116 3.884 8 H 0.093 0.907 9 N -0.703 5.703 10 C 0.518 3.482 11 O -0.588 6.588 12 C -0.131 4.131 13 C 0.073 3.927 14 O -0.318 6.318 15 C 0.122 3.878 16 C -0.216 4.216 17 C -0.064 4.064 18 C -0.161 4.161 19 C -0.073 4.073 20 O -0.559 6.559 21 Si 0.782 3.218 22 C -0.077 4.077 23 C -0.150 4.150 24 C -0.117 4.117 25 H 0.086 0.914 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.420 0.580 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.395 0.605 41 H -0.301 1.301 42 H -0.282 1.282 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.084 0.916 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 6.864 1.540 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.106 6.106 3 C -0.204 4.204 4 C -0.112 4.112 5 H 0.108 0.892 6 C -0.180 4.180 7 C 0.011 3.989 8 H 0.111 0.889 9 N -0.354 5.354 10 C 0.306 3.694 11 O -0.468 6.468 12 C -0.171 4.171 13 C -0.002 4.002 14 O -0.232 6.232 15 C 0.076 3.924 16 C -0.235 4.235 17 C -0.082 4.082 18 C -0.162 4.162 19 C -0.183 4.183 20 O -0.367 6.367 21 Si 0.688 3.312 22 C -0.094 4.094 23 C -0.168 4.168 24 C -0.156 4.156 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.258 0.742 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.120 0.880 40 H 0.245 0.755 41 H -0.229 1.229 42 H -0.209 1.209 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.103 0.897 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.970 5.226 0.655 7.961 hybrid contribution -0.934 -0.282 0.233 1.003 sum -6.904 4.944 0.888 8.538 Atomic orbital electron populations 1.23395 0.91495 1.07143 1.05817 1.87345 1.10494 1.14520 1.98204 1.23374 0.98771 0.92191 1.06056 1.22052 0.92759 0.98276 0.98127 0.89164 1.23526 0.98626 0.98665 0.97168 1.22443 0.98005 0.88395 0.90059 0.88883 1.45820 1.14682 1.33335 1.41605 1.20735 0.82149 0.85017 0.81528 1.90743 1.44616 1.45498 1.65940 1.21443 0.96805 0.99665 0.99152 1.22426 0.97642 0.89549 0.90607 1.85950 1.30146 1.52374 1.54715 1.19209 0.84300 0.95230 0.93637 1.21453 0.94966 1.01946 1.05092 1.20908 0.95564 0.97275 0.94496 1.20346 0.97102 0.98091 1.00670 1.25179 0.85516 1.09960 0.97622 1.86457 1.49784 1.48454 1.51962 0.93699 0.76324 0.83853 0.77363 1.21045 0.92068 0.97743 0.98591 1.20652 0.98589 0.99697 0.97861 1.23357 0.97029 0.95653 0.99605 0.89519 0.87906 0.89514 0.88670 0.88658 0.88381 0.92699 0.74155 0.85122 0.85432 0.92204 0.91833 0.85188 0.85553 0.88040 0.75527 1.22907 1.20909 0.82819 0.82942 0.89700 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.38 10.76 113.37 1.22 1.60 16 2 S -0.33 -0.63 22.37 -56.49 -1.26 -1.89 16 3 C -0.06 0.25 5.78 71.98 0.42 0.67 16 4 C -0.09 0.36 3.65 -10.27 -0.04 0.32 16 5 H 0.09 -0.07 8.13 -2.39 -0.02 -0.09 16 6 C -0.14 0.31 7.43 31.12 0.23 0.54 16 7 C 0.12 -0.31 4.24 45.52 0.19 -0.11 16 8 H 0.09 0.27 7.46 -2.38 -0.02 0.26 16 9 N -0.70 3.57 5.35 -440.03 -2.36 1.21 16 10 C 0.52 0.29 7.83 87.66 0.69 0.98 16 11 O -0.59 -6.24 15.58 -3.03 -0.05 -6.28 16 12 C -0.13 0.63 6.07 29.85 0.18 0.81 16 13 C 0.07 0.09 4.03 71.98 0.29 0.38 16 14 O -0.32 -0.96 10.14 -92.39 -0.94 -1.89 16 15 C 0.12 0.51 6.69 22.51 0.15 0.66 16 16 C -0.22 -1.06 9.04 22.37 0.20 -0.86 16 17 C -0.06 -0.29 9.60 22.26 0.21 -0.07 16 18 C -0.16 -0.34 5.39 -19.85 -0.11 -0.44 16 19 C -0.07 -0.08 2.82 71.24 0.20 0.12 16 20 O -0.56 -1.09 12.77 -148.98 -1.90 -3.00 16 21 Si 0.78 -1.37 29.78 68.60 2.04 0.67 16 22 C -0.08 0.02 8.66 22.25 0.19 0.21 16 23 C -0.15 -0.18 9.99 22.37 0.22 0.05 16 24 C -0.12 0.89 7.39 31.12 0.23 1.12 16 25 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 29 H 0.09 -0.65 7.85 -2.39 -0.02 -0.67 16 30 H 0.10 -0.43 7.90 -2.39 -0.02 -0.45 16 31 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.42 -5.08 8.73 -92.71 -0.81 -5.89 16 33 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 34 H 0.13 -1.09 8.14 -2.38 -0.02 -1.11 16 35 H 0.06 0.22 7.62 -2.39 -0.02 0.20 16 36 H 0.06 0.19 7.62 -2.39 -0.02 0.17 16 37 H 0.13 0.57 6.30 -2.91 -0.02 0.56 16 38 H 0.13 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.10 0.27 7.96 -2.39 -0.02 0.25 16 40 H 0.39 -2.45 8.70 -74.06 -0.64 -3.10 16 41 H -0.30 -1.77 7.11 99.48 0.71 -1.07 16 42 H -0.28 -0.66 7.11 99.48 0.71 0.05 16 43 H 0.15 -0.82 4.87 -2.91 -0.01 -0.83 16 44 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 45 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 46 H 0.11 -1.35 8.08 -2.39 -0.02 -1.36 16 Total: 0.00 -21.56 392.05 -0.40 -21.96 By element: Atomic # 1 Polarization: -16.33 SS G_CDS: -0.42 Total: -16.76 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.49 Total: 5.97 kcal Atomic # 7 Polarization: 3.57 SS G_CDS: -2.36 Total: 1.21 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -2.89 Total: -11.17 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: 2.04 Total: 0.67 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.26 Total: -1.89 kcal Total: -21.56 -0.40 -21.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.864 kcal (2) G-P(sol) polarization free energy of solvation -21.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds