Wall clock time and date at job start Sun Mar 7 2021 05:30:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81391 * 1
3 3 C 1.81397 * 103.00216 * 2 1
4 4 C 1.53002 * 109.47362 * 179.97438 * 3 2 1
5 5 H 1.08996 * 112.84579 * 43.80581 * 4 3 2
6 6 C 1.53780 * 113.61566 * 174.99688 * 4 3 2
7 7 C 1.53781 * 87.08282 * 140.06741 * 6 4 3
8 8 H 1.08999 * 113.61208 * 89.20255 * 7 6 4
9 9 N 1.46497 * 113.61640 * 220.02250 * 7 6 4
10 10 C 1.34773 * 120.00039 * 203.47132 * 9 7 6
11 11 O 1.21279 * 120.00062 * 359.97438 * 10 9 7
12 12 C 1.50695 * 120.00441 * 179.97438 * 10 9 7
13 13 C 1.52997 * 109.47483 * 179.97438 * 12 10 9
14 14 O 1.42900 * 109.47009 * 180.02562 * 13 12 10
15 15 C 1.35904 * 117.00131 * 180.02562 * 14 13 12
16 16 C 1.38705 * 120.05898 * 180.29486 * 15 14 13
17 17 C 1.38173 * 119.94106 * 180.29847 * 16 15 14
18 18 C 1.50701 * 119.96798 * 179.70184 * 17 16 15
19 19 O 1.42898 * 109.47201 * 64.98097 * 18 17 16
20 20 Si 1.86299 * 109.46917 * 184.98009 * 18 17 16
21 21 C 1.38232 * 120.05858 * 359.68223 * 17 16 15
22 22 C 1.38294 * 120.11124 * 0.02562 * 21 17 16
23 23 C 1.38122 * 120.05499 * 359.97438 * 22 21 17
24 24 C 1.53786 * 87.17127 * 334.61070 * 7 6 4
25 25 H 1.09012 * 109.47308 * 299.99955 * 1 2 3
26 26 H 1.08998 * 109.47311 * 59.99982 * 1 2 3
27 27 H 1.09000 * 109.47157 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47100 * 59.99983 * 3 2 1
29 29 H 1.09004 * 109.47324 * 300.00226 * 3 2 1
30 30 H 1.09009 * 113.61466 * 25.52037 * 6 4 3
31 31 H 1.08994 * 113.61893 * 254.61755 * 6 4 3
32 32 H 0.96995 * 119.99943 * 23.46509 * 9 7 6
33 33 H 1.09003 * 109.47042 * 59.99726 * 12 10 9
34 34 H 1.09002 * 109.47306 * 300.00274 * 12 10 9
35 35 H 1.09000 * 109.47327 * 60.00364 * 13 12 10
36 36 H 1.08994 * 109.47082 * 299.99879 * 13 12 10
37 37 H 1.07997 * 120.03207 * 0.02562 * 16 15 14
38 38 H 1.09005 * 109.47422 * 304.97762 * 18 17 16
39 39 H 0.96700 * 113.99760 * 179.97438 * 19 18 17
40 40 H 1.48502 * 110.00217 * 178.67856 * 20 18 17
41 41 H 1.48500 * 110.00080 * 299.99836 * 20 18 17
42 42 H 1.08002 * 119.94710 * 180.02562 * 21 17 16
43 43 H 1.08000 * 119.97251 * 179.97438 * 22 21 17
44 44 H 1.08002 * 120.02504 * 180.02562 * 23 22 21
45 45 H 1.08997 * 113.61063 * 139.93559 * 24 7 6
46 46 H 1.08994 * 113.61418 * 270.84537 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 6 3.7423 1.9399 0.0006
5 1 4.2448 1.2672 -0.6944
6 6 4.1963 3.4040 -0.1222
7 6 5.2882 3.0697 0.9078
8 1 6.2138 2.7072 0.4607
9 7 5.5098 4.1305 1.8935
10 6 6.6908 4.2165 2.5370
11 8 7.5700 3.4153 2.3004
12 6 6.9191 5.3081 3.5506
13 6 8.3296 5.1800 4.1292
14 8 8.5457 6.2148 5.0907
15 6 9.7586 6.2445 5.7032
16 6 10.0343 7.2183 6.6516
17 6 11.2704 7.2499 7.2683
18 6 11.5729 8.3118 8.2940
19 8 10.7249 8.1320 9.4301
20 14 13.3546 8.1760 8.8213
21 6 12.2295 6.3083 6.9456
22 6 11.9549 5.3327 6.0046
23 6 10.7209 5.2967 5.3853
24 6 4.3649 1.9465 1.4087
25 1 -0.3634 0.5139 0.8901
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 1.8031 2.2371 0.8900
29 1 1.8031 2.2371 -0.8900
30 1 3.4596 4.1214 0.2397
31 1 4.5881 3.6586 -1.1069
32 1 4.8065 4.7711 2.0830
33 1 6.1877 5.2169 4.3536
34 1 6.8104 6.2798 3.0688
35 1 9.0613 5.2710 3.3264
36 1 8.4378 4.2084 4.6111
37 1 9.2851 7.9538 6.9048
38 1 11.3962 9.2963 7.8609
39 1 10.8653 8.7818 10.1324
40 1 13.6743 9.2378 9.8091
41 1 13.6085 6.8382 9.4137
42 1 13.1949 6.3345 7.4290
43 1 12.7061 4.5984 5.7538
44 1 10.5068 4.5344 4.6508
45 1 4.8927 1.0260 1.6580
46 1 3.6744 2.2646 2.1898
There are 60 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 60
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534458_4549614.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:30:56
Heat of formation + Delta-G solvation = -55.945012 kcal
Electronic energy + Delta-G solvation = -25392.268972 eV
Core-core repulsion = 21568.819260 eV
Total energy + Delta-G solvation = -3823.449713 eV
No. of doubly occupied orbitals = 60
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 338.138 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.48097 -41.09162 -39.65620 -38.99522 -37.45188 -34.88687 -33.28711 -32.61747
-31.02594 -30.41439 -29.60205 -27.07571 -26.72857 -25.71770 -23.68515 -23.41723
-21.92116 -21.50596 -20.56607 -19.15563 -18.57489 -17.94860 -17.75240 -17.48306
-17.25782 -17.08966 -16.77986 -16.38029 -16.08077 -15.82724 -15.63171 -15.26884
-14.91685 -14.69657 -14.56180 -14.47614 -14.29443 -14.06217 -13.93975 -13.77749
-13.49353 -13.44927 -13.39159 -13.04320 -12.95018 -12.80905 -12.36253 -12.14019
-11.99084 -11.82336 -11.67768 -11.58417 -11.48908 -11.00366 -10.89367 -10.54164
-10.09153 -9.93792 -9.28757 -8.71705 -4.91237 0.18026 0.37760 0.72704
1.28084 1.49769 1.60801 1.67561 1.71630 1.95288 2.49648 2.61123
3.37785 3.41535 3.54393 3.55372 3.70883 3.75316 3.78454 3.83286
3.89221 3.97775 4.09049 4.21478 4.23448 4.25278 4.29326 4.30873
4.33458 4.36291 4.47595 4.53287 4.61934 4.66997 4.71653 4.75172
4.77832 4.81021 4.86198 4.96296 4.99424 5.04190 5.22822 5.24501
5.36223 5.44046 5.54741 5.67803 6.31213 6.46957 6.58252 7.15795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 S -0.330 6.330
3 C -0.056 4.056
4 C -0.092 4.092
5 H 0.091 0.909
6 C -0.116 4.116
7 C 0.117 3.883
8 H 0.094 0.906
9 N -0.703 5.703
10 C 0.519 3.481
11 O -0.585 6.585
12 C -0.132 4.132
13 C 0.073 3.927
14 O -0.323 6.323
15 C 0.117 3.883
16 C -0.141 4.141
17 C -0.047 4.047
18 C -0.089 4.089
19 O -0.559 6.559
20 Si 0.771 3.229
21 C -0.160 4.160
22 C -0.076 4.076
23 C -0.211 4.211
24 C -0.142 4.142
25 H 0.085 0.915
26 H 0.086 0.914
27 H 0.102 0.898
28 H 0.094 0.906
29 H 0.095 0.905
30 H 0.112 0.888
31 H 0.086 0.914
32 H 0.420 0.580
33 H 0.125 0.875
34 H 0.129 0.871
35 H 0.067 0.933
36 H 0.061 0.939
37 H 0.131 0.869
38 H 0.097 0.903
39 H 0.396 0.604
40 H -0.283 1.283
41 H -0.298 1.298
42 H 0.144 0.856
43 H 0.154 0.846
44 H 0.138 0.862
45 H 0.055 0.945
46 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.424 5.430 -2.677 6.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.279 4.279
2 S -0.105 6.105
3 C -0.204 4.204
4 C -0.112 4.112
5 H 0.109 0.891
6 C -0.156 4.156
7 C 0.012 3.988
8 H 0.112 0.888
9 N -0.355 5.355
10 C 0.307 3.693
11 O -0.466 6.466
12 C -0.172 4.172
13 C -0.002 4.002
14 O -0.237 6.237
15 C 0.072 3.928
16 C -0.160 4.160
17 C -0.047 4.047
18 C -0.198 4.198
19 O -0.369 6.369
20 Si 0.676 3.324
21 C -0.178 4.178
22 C -0.093 4.093
23 C -0.230 4.230
24 C -0.180 4.180
25 H 0.104 0.896
26 H 0.105 0.895
27 H 0.121 0.879
28 H 0.113 0.887
29 H 0.114 0.886
30 H 0.130 0.870
31 H 0.104 0.896
32 H 0.258 0.742
33 H 0.143 0.857
34 H 0.147 0.853
35 H 0.086 0.914
36 H 0.080 0.920
37 H 0.148 0.852
38 H 0.115 0.885
39 H 0.246 0.754
40 H -0.210 1.210
41 H -0.226 1.226
42 H 0.161 0.839
43 H 0.171 0.829
44 H 0.156 0.844
45 H 0.074 0.926
46 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -2.013 3.506 -2.537 4.773
hybrid contribution -1.866 0.998 0.929 2.311
sum -3.880 4.503 -1.608 6.158
Atomic orbital electron populations
1.23396 0.91528 1.07148 1.05803 1.87335 1.10459 1.14478 1.98201
1.23374 0.98807 0.92219 1.06026 1.22081 0.92721 0.98267 0.98095
0.89077 1.23349 0.96996 0.95653 0.99620 1.22448 0.98039 0.88343
0.90002 0.88797 1.45826 1.15765 1.32738 1.41174 1.20671 0.82034
0.85121 0.81475 1.90737 1.44785 1.44478 1.66554 1.21442 0.97081
0.99695 0.98979 1.22449 0.97730 0.89515 0.90537 1.85945 1.31267
1.52228 1.54250 1.19115 0.84888 0.95360 0.93445 1.20338 0.97885
1.00064 0.97676 1.19287 0.93545 0.96148 0.95738 1.25102 1.07147
0.99721 0.87780 1.86554 1.61270 1.59150 1.29898 0.93969 0.75829
0.76724 0.85881 1.21161 0.99923 0.95968 1.00743 1.21227 0.96252
0.97687 0.94173 1.21553 0.95271 1.01214 1.04959 1.23556 0.98637
0.98704 0.97153 0.89561 0.89505 0.87887 0.88748 0.88645 0.86960
0.89584 0.74220 0.85713 0.85270 0.91436 0.92027 0.85151 0.88513
0.75376 1.21026 1.22581 0.83893 0.82873 0.84417 0.92648 0.88534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 0.35 10.76 113.37 1.22 1.57 16
2 S -0.33 -0.70 22.37 -56.49 -1.26 -1.96 16
3 C -0.06 0.23 5.78 71.98 0.42 0.65 16
4 C -0.09 0.34 3.65 -10.21 -0.04 0.30 16
5 H 0.09 -0.07 8.13 -2.39 -0.02 -0.09 16
6 C -0.12 0.86 7.39 31.12 0.23 1.09 16
7 C 0.12 -0.28 4.21 45.52 0.19 -0.08 16
8 H 0.09 0.27 7.50 -2.39 -0.02 0.25 16
9 N -0.70 3.17 5.36 -440.05 -2.36 0.81 16
10 C 0.52 0.59 7.83 87.66 0.69 1.28 16
11 O -0.59 -6.27 15.60 -3.03 -0.05 -6.32 16
12 C -0.13 0.46 6.07 29.85 0.18 0.64 16
13 C 0.07 0.18 4.03 71.98 0.29 0.47 16
14 O -0.32 -1.84 10.14 -92.47 -0.94 -2.77 16
15 C 0.12 0.84 6.69 22.51 0.15 0.99 16
16 C -0.14 -0.99 9.62 22.37 0.22 -0.77 16
17 C -0.05 -0.23 5.38 -19.88 -0.11 -0.34 16
18 C -0.09 -0.09 2.79 71.24 0.20 0.10 16
19 O -0.56 -2.16 12.81 -148.98 -1.91 -4.06 16
20 Si 0.77 -0.95 29.85 68.60 2.05 1.09 16
21 C -0.16 -0.51 8.67 22.28 0.19 -0.32 16
22 C -0.08 -0.21 10.04 22.26 0.22 0.01 16
23 C -0.21 -1.08 9.04 22.37 0.20 -0.88 16
24 C -0.14 0.25 7.45 31.18 0.23 0.49 16
25 H 0.09 -0.44 8.14 -2.38 -0.02 -0.45 16
26 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16
27 H 0.10 -0.36 8.14 -2.39 -0.02 -0.37 16
28 H 0.09 -0.60 7.86 -2.39 -0.02 -0.62 16
29 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16
30 H 0.11 -1.29 8.07 -2.38 -0.02 -1.31 16
31 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16
32 H 0.42 -4.74 8.71 -92.71 -0.81 -5.55 16
33 H 0.12 -0.85 8.14 -2.39 -0.02 -0.87 16
34 H 0.13 -0.99 8.14 -2.39 -0.02 -1.01 16
35 H 0.07 0.22 7.62 -2.39 -0.02 0.20 16
36 H 0.06 0.27 7.62 -2.39 -0.02 0.25 16
37 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16
38 H 0.10 -0.29 7.96 -2.38 -0.02 -0.31 16
39 H 0.40 -1.86 8.74 -74.06 -0.65 -2.51 16
40 H -0.28 -0.65 7.11 99.48 0.71 0.05 16
41 H -0.30 -1.77 7.05 99.48 0.70 -1.07 16
42 H 0.14 -0.11 4.86 -2.91 -0.01 -0.12 16
43 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16
44 H 0.14 0.45 6.30 -2.91 -0.02 0.44 16
45 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16
46 H 0.10 -0.35 7.91 -2.39 -0.02 -0.37 16
Total: 0.00 -22.25 392.21 -0.41 -22.67
By element:
Atomic # 1 Polarization: -14.22 SS G_CDS: -0.43 Total: -14.65 kcal
Atomic # 6 Polarization: 0.71 SS G_CDS: 4.49 Total: 5.19 kcal
Atomic # 7 Polarization: 3.17 SS G_CDS: -2.36 Total: 0.81 kcal
Atomic # 8 Polarization: -10.27 SS G_CDS: -2.89 Total: -13.16 kcal
Atomic # 14 Polarization: -0.95 SS G_CDS: 2.05 Total: 1.09 kcal
Atomic # 16 Polarization: -0.70 SS G_CDS: -1.26 Total: -1.96 kcal
Total: -22.25 -0.41 -22.67 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534458_4549614.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.277 kcal
(2) G-P(sol) polarization free energy of solvation -22.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.532 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds