Wall clock time and date at job start Sun Mar 7 2021 05:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00315 * 2 1 4 4 C 1.39143 * 120.07360 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07926 * 359.97438 * 4 3 2 6 6 C 1.42895 * 117.00349 * 179.72723 * 5 4 3 7 7 C 1.50701 * 109.46838 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00269 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99932 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53779 * 87.08093 * 139.99098 * 12 10 9 14 14 H 1.09003 * 113.61186 * 89.11185 * 13 12 10 15 15 C 1.52998 * 113.68908 * 220.00507 * 13 12 10 16 16 S 1.81397 * 109.47236 * 272.53492 * 15 13 12 17 17 C 1.81395 * 102.99910 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 19 19 C 1.38570 * 119.85151 * 179.72684 * 4 3 2 20 20 C 1.38242 * 120.00289 * 0.27005 * 19 4 3 21 21 N 1.48006 * 119.92858 * 180.02562 * 20 19 4 22 22 O 1.21795 * 119.99865 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99488 * 179.97438 * 21 20 19 24 24 C 1.38255 * 120.14331 * 359.97438 * 20 19 4 25 25 C 1.50698 * 119.92647 * 179.97438 * 24 20 19 26 26 O 1.42899 * 109.46712 * 75.00407 * 25 24 20 27 27 Si 1.86299 * 109.47009 * 195.00104 * 25 24 20 28 28 C 1.38245 * 120.14583 * 0.02562 * 24 20 19 29 29 H 1.09000 * 109.46750 * 59.99973 * 1 2 3 30 30 H 1.08990 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46991 * 300.00213 * 1 2 3 32 32 H 1.08997 * 109.47351 * 60.00536 * 6 5 4 33 33 H 1.08994 * 109.47217 * 299.99473 * 6 5 4 34 34 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 35 35 H 1.09003 * 113.60734 * 254.54218 * 12 10 9 36 36 H 1.08996 * 113.61146 * 25.43716 * 12 10 9 37 37 H 1.09002 * 109.47010 * 32.54063 * 15 13 12 38 38 H 1.09006 * 109.47124 * 152.53503 * 15 13 12 39 39 H 1.09001 * 109.46924 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47573 * 299.99802 * 17 16 15 41 41 H 1.09004 * 109.47327 * 60.00393 * 17 16 15 42 42 H 1.09005 * 113.61302 * 334.48230 * 18 10 9 43 43 H 1.08993 * 113.62030 * 105.39076 * 18 10 9 44 44 H 1.08009 * 119.99940 * 180.30113 * 19 4 3 45 45 H 1.09000 * 109.47201 * 315.00354 * 25 24 20 46 46 H 0.96698 * 114.00253 * 60.00067 * 26 25 24 47 47 H 1.48497 * 110.00043 * 58.68529 * 27 25 24 48 48 H 1.48504 * 109.99567 * 180.02562 * 27 25 24 49 49 H 1.08001 * 120.00233 * 179.97438 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1796 0.1476 0.0016 6 6 5.6003 0.3006 -0.0040 7 6 6.2518 -1.0583 -0.0025 8 8 5.5669 -2.0592 0.0023 9 7 7.5957 -1.1613 -0.0076 10 6 8.2290 -2.4824 -0.0056 11 1 7.5951 -3.2551 0.4294 12 6 8.8394 -2.8769 -1.3609 13 6 10.0160 -3.4714 -0.5690 14 1 9.8706 -4.5145 -0.2880 15 6 11.3811 -3.2134 -1.2100 16 16 11.7469 -4.5292 -2.4039 17 6 13.3754 -4.0554 -3.0471 18 6 9.6630 -2.4771 0.5499 19 6 4.0603 2.5233 -0.0052 20 6 3.3030 3.6799 -0.0058 21 7 3.9716 5.0003 -0.0125 22 8 5.1877 5.0670 -0.0179 23 8 3.3056 6.0200 -0.0135 24 6 1.9225 3.6058 -0.0012 25 6 1.1017 4.8697 -0.0013 26 8 1.1306 5.4561 -1.3041 27 14 -0.6579 4.4674 0.4598 28 6 1.2933 2.3748 0.0045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.9098 0.8532 0.8831 33 1 5.9034 0.8474 -0.8968 34 1 8.1434 -0.3608 -0.0118 35 1 8.2562 -3.6222 -1.9019 36 1 9.1164 -2.0237 -1.9799 37 1 11.3659 -2.2515 -1.7225 38 1 12.1491 -3.2008 -0.4366 39 1 13.7011 -4.7873 -3.7863 40 1 13.3099 -3.0726 -3.5139 41 1 14.0938 -4.0215 -2.2280 42 1 10.1652 -1.5145 0.4531 43 1 9.7450 -2.8996 1.5512 44 1 5.1387 2.5839 -0.0097 45 1 1.5157 5.5717 0.7225 46 1 0.7764 4.8859 -2.0001 47 1 -0.6984 3.8278 1.7994 48 1 -1.4778 5.7056 0.4627 49 1 0.2147 2.3196 0.0085 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:16 Heat of formation + Delta-G solvation = -70.801413 kcal Electronic energy + Delta-G solvation = -35015.929266 eV Core-core repulsion = 30042.136704 eV Total energy + Delta-G solvation = -4973.792562 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.132 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.24861 -42.13318 -41.36473 -40.22065 -39.37365 -39.04949 -37.56528 -37.08272 -34.99372 -32.72274 -32.60373 -31.11736 -29.99496 -29.44447 -28.93165 -27.87419 -26.90402 -25.87374 -24.38092 -23.55738 -23.12548 -21.81084 -20.84784 -20.72637 -19.69716 -19.57040 -18.72975 -18.50319 -18.41972 -17.84588 -17.75340 -17.67110 -17.37249 -17.02110 -16.82513 -16.50638 -16.47230 -16.13943 -15.80955 -15.74929 -15.24217 -15.18418 -14.93354 -14.79963 -14.44342 -14.37346 -14.07743 -13.96173 -13.94722 -13.64819 -13.54998 -13.51916 -13.15986 -13.04209 -12.73346 -12.58318 -12.51924 -12.29572 -12.26685 -12.21008 -11.95519 -11.73418 -11.68202 -11.60287 -10.99698 -10.95554 -10.59187 -10.54057 -10.22794 -9.54457 -8.68707 -5.28101 -1.23642 -0.52168 0.30854 0.42188 0.63006 1.02186 1.13790 1.35575 1.43630 1.57050 1.70676 1.81965 1.85542 2.23704 2.89521 3.06919 3.18611 3.24154 3.32702 3.36317 3.41060 3.44551 3.56970 3.59036 3.63614 3.71917 3.79006 3.84591 3.93936 3.96508 4.09711 4.11963 4.14334 4.15279 4.17688 4.23934 4.37575 4.37948 4.49169 4.53313 4.58744 4.63658 4.66042 4.71469 4.82036 4.92595 5.07457 5.33631 5.44698 5.46543 5.91199 6.22753 6.43210 6.77231 6.97730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.284 6.284 3 C 0.171 3.829 4 C 0.109 3.891 5 O -0.264 6.264 6 C 0.031 3.969 7 C 0.519 3.481 8 O -0.507 6.507 9 N -0.716 5.716 10 C 0.125 3.875 11 H 0.119 0.881 12 C -0.143 4.143 13 C -0.093 4.093 14 H 0.105 0.895 15 C -0.073 4.073 16 S -0.261 6.261 17 C -0.123 4.123 18 C -0.135 4.135 19 C -0.118 4.118 20 C -0.025 4.025 21 N 0.032 4.968 22 O -0.174 6.174 23 O -0.129 6.129 24 C -0.043 4.043 25 C -0.074 4.074 26 O -0.515 6.515 27 Si 0.674 3.326 28 C -0.177 4.177 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.404 0.596 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.166 0.834 45 H 0.139 0.861 46 H 0.374 0.626 47 H -0.252 1.252 48 H -0.242 1.242 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -2.142 -0.516 2.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.195 6.195 3 C 0.122 3.878 4 C 0.062 3.938 5 O -0.176 6.176 6 C -0.048 4.048 7 C 0.303 3.697 8 O -0.380 6.380 9 N -0.369 5.369 10 C 0.020 3.980 11 H 0.137 0.863 12 C -0.182 4.182 13 C -0.112 4.112 14 H 0.123 0.877 15 C -0.222 4.222 16 S -0.035 6.035 17 C -0.292 4.292 18 C -0.175 4.175 19 C -0.138 4.138 20 C -0.109 4.109 21 N 0.551 4.449 22 O -0.385 6.385 23 O -0.350 6.350 24 C -0.045 4.045 25 C -0.184 4.184 26 O -0.319 6.319 27 Si 0.574 3.426 28 C -0.196 4.196 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.238 0.762 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.184 0.816 45 H 0.156 0.844 46 H 0.220 0.780 47 H -0.176 1.176 48 H -0.166 1.166 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.686 -4.201 0.107 4.528 hybrid contribution 1.977 2.250 0.459 3.031 sum 0.291 -1.951 0.566 2.052 Atomic orbital electron populations 1.23422 0.76791 1.05798 1.02171 1.86348 1.22497 1.24207 1.86484 1.18449 0.89043 0.85903 0.94375 1.17853 0.88432 0.85338 1.02183 1.86338 1.16852 1.26006 1.88401 1.22677 0.80231 0.97305 1.04587 1.19878 0.82752 0.90120 0.76937 1.90808 1.62593 1.37827 1.46805 1.45794 1.05682 1.09590 1.75875 1.22560 0.92769 0.85155 0.97504 0.86271 1.23559 0.96473 1.01365 0.96804 1.22104 0.92204 1.00411 0.96521 0.87665 1.23382 1.00292 0.99166 0.99338 1.87085 1.24972 1.38493 1.52995 1.23400 0.96154 1.05398 1.04208 1.23433 0.94781 1.00116 0.99174 1.20803 1.02190 0.88973 1.01832 1.20400 0.91981 0.83137 1.15420 1.43379 1.00978 1.02622 0.97908 1.94538 0.95808 1.93723 1.54392 1.94577 1.64439 1.24083 1.51869 1.20100 0.91601 0.97056 0.95745 1.25467 1.08475 0.93277 0.91191 1.86711 1.86529 1.43426 1.15226 0.95567 0.76376 0.85263 0.85370 1.20902 1.00504 0.89594 1.08556 0.91352 0.86755 0.91743 0.88256 0.88215 0.76166 0.90248 0.89348 0.89938 0.89733 0.87926 0.90466 0.90434 0.89127 0.89936 0.81649 0.84419 0.77973 1.17641 1.16568 0.82018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.81 101.05 0.99 0.94 16 2 O -0.28 -0.05 10.28 -34.24 -0.35 -0.41 16 3 C 0.17 -0.03 6.70 -39.12 -0.26 -0.29 16 4 C 0.11 0.05 6.70 -39.12 -0.26 -0.21 16 5 O -0.26 -0.42 9.45 -47.35 -0.45 -0.87 16 6 C 0.03 -0.06 5.22 36.01 0.19 0.13 16 7 C 0.52 0.24 7.91 -10.98 -0.09 0.15 16 8 O -0.51 -2.77 16.12 -14.35 -0.23 -3.01 16 9 N -0.72 1.82 5.36 -53.01 -0.28 1.54 16 10 C 0.12 -0.22 4.22 -67.12 -0.28 -0.51 16 11 H 0.12 0.02 7.50 -51.93 -0.39 -0.37 16 12 C -0.14 0.24 7.44 -25.92 -0.19 0.05 16 13 C -0.09 0.21 3.65 -89.81 -0.33 -0.12 16 14 H 0.11 -0.15 8.13 -51.93 -0.42 -0.57 16 15 C -0.07 0.15 5.78 37.16 0.21 0.36 16 16 S -0.26 -0.13 22.37 -107.50 -2.40 -2.54 16 17 C -0.12 0.19 10.76 101.05 1.09 1.28 16 18 C -0.14 0.48 7.39 -25.92 -0.19 0.29 16 19 C -0.12 0.02 8.54 -39.46 -0.34 -0.32 16 20 C -0.03 -0.04 6.85 -79.95 -0.55 -0.59 16 21 N 0.03 0.13 4.45 33.96 0.15 0.29 16 22 O -0.17 -0.83 18.44 -29.46 -0.54 -1.38 16 23 O -0.13 -0.70 14.62 -35.97 -0.53 -1.23 16 24 C -0.04 0.01 5.26 -104.61 -0.55 -0.54 16 25 C -0.07 0.01 1.74 36.00 0.06 0.07 16 26 O -0.52 -0.18 11.79 -55.50 -0.65 -0.84 16 27 Si 0.67 -1.48 29.91 -169.99 -5.08 -6.57 16 28 C -0.18 0.35 7.65 -39.46 -0.30 0.04 16 29 H 0.07 -0.43 7.67 -51.93 -0.40 -0.82 16 30 H 0.11 -0.59 8.14 -51.93 -0.42 -1.01 16 31 H 0.06 -0.35 7.65 -51.92 -0.40 -0.74 16 32 H 0.10 -0.44 7.66 -51.93 -0.40 -0.84 16 33 H 0.10 -0.44 7.66 -51.93 -0.40 -0.84 16 34 H 0.40 -2.29 8.71 -40.82 -0.36 -2.65 16 35 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.09 -0.19 7.90 -51.93 -0.41 -0.60 16 37 H 0.08 -0.22 7.85 -51.92 -0.41 -0.63 16 38 H 0.08 -0.21 8.14 -51.92 -0.42 -0.64 16 39 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 40 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 41 H 0.08 -0.17 8.14 -51.92 -0.42 -0.60 16 42 H 0.09 -0.44 8.07 -51.93 -0.42 -0.86 16 43 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 44 H 0.17 -0.35 5.85 -52.48 -0.31 -0.66 16 45 H 0.14 0.22 6.07 -51.93 -0.32 -0.10 16 46 H 0.37 -1.57 8.70 45.56 0.40 -1.17 16 47 H -0.25 0.05 7.11 56.52 0.40 0.45 16 48 H -0.24 -0.28 7.11 56.52 0.40 0.12 16 49 H 0.16 -0.81 3.36 -52.49 -0.18 -0.98 16 LS Contribution 422.41 15.07 6.37 6.37 Total: 0.00 -12.38 422.41 -11.36 -23.74 By element: Atomic # 1 Polarization: -9.30 SS G_CDS: -6.55 Total: -15.86 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.80 Total: 0.74 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -0.13 Total: 1.82 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -2.75 Total: -7.72 kcal Atomic # 14 Polarization: -1.48 SS G_CDS: -5.08 Total: -6.57 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.40 Total: -2.54 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -12.38 -11.36 -23.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.057 kcal (2) G-P(sol) polarization free energy of solvation -12.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds