Wall clock time and date at job start Sun Mar 7 2021 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36000 * 117.00315 * 2 1 4 4 C 1.39143 * 120.07360 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.07926 * 359.97438 * 4 3 2 6 6 C 1.42895 * 117.00349 * 179.72723 * 5 4 3 7 7 C 1.50701 * 109.46838 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00269 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99932 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53779 * 87.08093 * 139.99098 * 12 10 9 14 14 H 1.09003 * 113.61186 * 89.11185 * 13 12 10 15 15 C 1.52998 * 113.68908 * 220.00507 * 13 12 10 16 16 S 1.81397 * 109.47236 * 272.53492 * 15 13 12 17 17 C 1.81395 * 102.99910 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 19 19 C 1.38570 * 119.85151 * 179.72684 * 4 3 2 20 20 C 1.38242 * 120.00289 * 0.27005 * 19 4 3 21 21 N 1.48006 * 119.92858 * 180.02562 * 20 19 4 22 22 O 1.21795 * 119.99865 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99488 * 179.97438 * 21 20 19 24 24 C 1.38255 * 120.14331 * 359.97438 * 20 19 4 25 25 C 1.50698 * 119.92647 * 179.97438 * 24 20 19 26 26 O 1.42899 * 109.46712 * 75.00407 * 25 24 20 27 27 Si 1.86299 * 109.47009 * 195.00104 * 25 24 20 28 28 C 1.38245 * 120.14583 * 0.02562 * 24 20 19 29 29 H 1.09000 * 109.46750 * 59.99973 * 1 2 3 30 30 H 1.08990 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46991 * 300.00213 * 1 2 3 32 32 H 1.08997 * 109.47351 * 60.00536 * 6 5 4 33 33 H 1.08994 * 109.47217 * 299.99473 * 6 5 4 34 34 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 35 35 H 1.09003 * 113.60734 * 254.54218 * 12 10 9 36 36 H 1.08996 * 113.61146 * 25.43716 * 12 10 9 37 37 H 1.09002 * 109.47010 * 32.54063 * 15 13 12 38 38 H 1.09006 * 109.47124 * 152.53503 * 15 13 12 39 39 H 1.09001 * 109.46924 * 180.02562 * 17 16 15 40 40 H 1.08997 * 109.47573 * 299.99802 * 17 16 15 41 41 H 1.09004 * 109.47327 * 60.00393 * 17 16 15 42 42 H 1.09005 * 113.61302 * 334.48230 * 18 10 9 43 43 H 1.08993 * 113.62030 * 105.39076 * 18 10 9 44 44 H 1.08009 * 119.99940 * 180.30113 * 19 4 3 45 45 H 1.09000 * 109.47201 * 315.00354 * 25 24 20 46 46 H 0.96698 * 114.00253 * 60.00067 * 26 25 24 47 47 H 1.48497 * 110.00043 * 58.68529 * 27 25 24 48 48 H 1.48504 * 109.99567 * 180.02562 * 27 25 24 49 49 H 1.08001 * 120.00233 * 179.97438 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1796 0.1476 0.0016 6 6 5.6003 0.3006 -0.0040 7 6 6.2518 -1.0583 -0.0025 8 8 5.5669 -2.0592 0.0023 9 7 7.5957 -1.1613 -0.0076 10 6 8.2290 -2.4824 -0.0056 11 1 7.5951 -3.2551 0.4294 12 6 8.8394 -2.8769 -1.3609 13 6 10.0160 -3.4714 -0.5690 14 1 9.8706 -4.5145 -0.2880 15 6 11.3811 -3.2134 -1.2100 16 16 11.7469 -4.5292 -2.4039 17 6 13.3754 -4.0554 -3.0471 18 6 9.6630 -2.4771 0.5499 19 6 4.0603 2.5233 -0.0052 20 6 3.3030 3.6799 -0.0058 21 7 3.9716 5.0003 -0.0125 22 8 5.1877 5.0670 -0.0179 23 8 3.3056 6.0200 -0.0135 24 6 1.9225 3.6058 -0.0012 25 6 1.1017 4.8697 -0.0013 26 8 1.1306 5.4561 -1.3041 27 14 -0.6579 4.4674 0.4598 28 6 1.2933 2.3748 0.0045 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 5.9098 0.8532 0.8831 33 1 5.9034 0.8474 -0.8968 34 1 8.1434 -0.3608 -0.0118 35 1 8.2562 -3.6222 -1.9019 36 1 9.1164 -2.0237 -1.9799 37 1 11.3659 -2.2515 -1.7225 38 1 12.1491 -3.2008 -0.4366 39 1 13.7011 -4.7873 -3.7863 40 1 13.3099 -3.0726 -3.5139 41 1 14.0938 -4.0215 -2.2280 42 1 10.1652 -1.5145 0.4531 43 1 9.7450 -2.8996 1.5512 44 1 5.1387 2.5839 -0.0097 45 1 1.5157 5.5717 0.7225 46 1 0.7764 4.8859 -2.0001 47 1 -0.6984 3.8278 1.7994 48 1 -1.4778 5.7056 0.4627 49 1 0.2147 2.3196 0.0085 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:14 Heat of formation + Delta-G solvation = -72.018547 kcal Electronic energy + Delta-G solvation = -35015.982045 eV Core-core repulsion = 30042.136704 eV Total energy + Delta-G solvation = -4973.845341 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.132 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.40805 -42.12506 -41.31189 -40.12302 -39.32098 -39.05418 -37.73881 -37.13306 -34.97650 -32.68355 -32.56373 -31.01040 -29.87001 -29.30952 -28.69490 -27.91435 -26.72982 -25.86298 -24.31712 -23.50330 -23.10075 -21.77705 -20.77684 -20.70106 -19.84530 -19.50995 -18.73050 -18.66667 -18.40478 -17.77556 -17.70924 -17.60528 -17.30684 -16.86796 -16.76205 -16.41013 -16.37297 -16.08896 -15.73145 -15.67075 -15.16906 -15.11650 -14.80940 -14.68607 -14.39824 -14.24698 -13.96104 -13.88340 -13.80897 -13.49101 -13.44747 -13.40136 -13.03513 -12.93370 -12.67510 -12.49562 -12.44048 -12.33300 -12.27826 -12.21578 -12.14240 -11.78661 -11.59539 -11.49720 -11.03240 -10.88719 -10.53781 -10.46391 -10.16173 -9.49562 -8.70855 -5.13705 -1.36975 -0.43947 0.15773 0.29955 0.73281 1.12638 1.25362 1.37022 1.57145 1.68361 1.89327 1.89446 1.93512 2.35870 2.97614 3.17164 3.26666 3.39991 3.45626 3.51272 3.54039 3.55954 3.72458 3.76085 3.87305 3.93471 3.96123 4.05488 4.10904 4.22244 4.23685 4.29999 4.31558 4.34056 4.38861 4.41308 4.53582 4.54604 4.71716 4.72738 4.74908 4.81089 4.81760 4.87000 4.97855 5.04202 5.18914 5.24595 5.48958 5.59898 6.05944 6.39577 6.46311 6.71156 7.07678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.171 3.829 4 C 0.100 3.900 5 O -0.291 6.291 6 C 0.026 3.974 7 C 0.516 3.484 8 O -0.568 6.568 9 N -0.698 5.698 10 C 0.119 3.881 11 H 0.094 0.906 12 C -0.141 4.141 13 C -0.092 4.092 14 H 0.091 0.909 15 C -0.057 4.057 16 S -0.330 6.330 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.110 4.110 20 C -0.046 4.046 21 N 0.036 4.964 22 O -0.186 6.186 23 O -0.166 6.166 24 C -0.040 4.040 25 C -0.091 4.091 26 O -0.536 6.536 27 Si 0.786 3.214 28 C -0.163 4.163 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.422 0.578 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.086 0.914 44 H 0.184 0.816 45 H 0.115 0.885 46 H 0.393 0.607 47 H -0.272 1.272 48 H -0.290 1.290 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 -1.704 -0.399 1.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.219 6.219 3 C 0.122 3.878 4 C 0.053 3.947 5 O -0.203 6.203 6 C -0.051 4.051 7 C 0.302 3.698 8 O -0.446 6.446 9 N -0.351 5.351 10 C 0.014 3.986 11 H 0.112 0.888 12 C -0.180 4.180 13 C -0.112 4.112 14 H 0.109 0.891 15 C -0.205 4.205 16 S -0.104 6.104 17 C -0.279 4.279 18 C -0.156 4.156 19 C -0.129 4.129 20 C -0.131 4.131 21 N 0.549 4.451 22 O -0.396 6.396 23 O -0.380 6.380 24 C -0.042 4.042 25 C -0.199 4.199 26 O -0.343 6.343 27 Si 0.688 3.312 28 C -0.181 4.181 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.098 0.902 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.133 0.867 43 H 0.104 0.896 44 H 0.201 0.799 45 H 0.132 0.868 46 H 0.242 0.758 47 H -0.198 1.198 48 H -0.217 1.217 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.552 -3.709 0.200 4.026 hybrid contribution 1.952 2.036 0.405 2.850 sum 0.400 -1.673 0.605 1.823 Atomic orbital electron populations 1.23815 0.74677 1.07077 1.04201 1.86336 1.24876 1.24522 1.86185 1.18682 0.89168 0.86393 0.93561 1.17973 0.88843 0.85119 1.02791 1.86305 1.18499 1.26827 1.88714 1.22927 0.78800 0.96102 1.07281 1.20379 0.83286 0.90385 0.75786 1.90782 1.64000 1.39880 1.49916 1.45673 1.05044 1.10157 1.74267 1.22478 0.93440 0.85020 0.97693 0.88828 1.23539 0.96528 1.01180 0.96751 1.22044 0.92008 1.00103 0.97009 0.89076 1.23378 1.00287 0.98195 0.98597 1.87338 1.27374 1.41062 1.54669 1.23395 0.94321 1.05760 1.04414 1.23367 0.92844 1.00708 0.98643 1.20903 1.03009 0.88126 1.00886 1.20559 0.92766 0.81924 1.17810 1.43713 1.00821 1.03435 0.97155 1.94498 0.96518 1.94118 1.54513 1.94579 1.64408 1.25414 1.53585 1.20227 0.91073 0.97662 0.95264 1.25765 1.10590 0.92786 0.90787 1.86668 1.87031 1.44616 1.15992 0.94387 0.71822 0.82202 0.82762 1.21084 1.01771 0.88084 1.07188 0.88815 0.86096 0.90157 0.85395 0.85397 0.73942 0.92588 0.88255 0.88627 0.88670 0.87914 0.89537 0.89541 0.86726 0.89561 0.79935 0.86800 0.75804 1.19766 1.21731 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.31 0.08 10.28 -79.69 -0.82 -0.74 16 3 C 0.17 -0.19 6.70 22.57 0.15 -0.04 16 4 C 0.10 0.05 6.70 22.57 0.15 0.20 16 5 O -0.29 -0.95 9.45 -67.09 -0.63 -1.59 16 6 C 0.03 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.52 0.68 7.91 87.66 0.69 1.38 16 8 O -0.57 -7.37 16.12 16.01 0.26 -7.11 16 9 N -0.70 3.88 5.36 -440.02 -2.36 1.52 16 10 C 0.12 -0.36 4.22 45.52 0.19 -0.17 16 11 H 0.09 0.24 7.50 -2.39 -0.02 0.22 16 12 C -0.14 0.37 7.44 31.12 0.23 0.61 16 13 C -0.09 0.40 3.65 -10.27 -0.04 0.36 16 14 H 0.09 -0.12 8.13 -2.39 -0.02 -0.14 16 15 C -0.06 0.27 5.78 71.98 0.42 0.69 16 16 S -0.33 -0.55 22.37 -56.49 -1.26 -1.81 16 17 C -0.11 0.39 10.76 113.37 1.22 1.61 16 18 C -0.12 0.95 7.39 31.12 0.23 1.18 16 19 C -0.11 0.08 8.54 22.35 0.19 0.27 16 20 C -0.05 -0.15 6.85 36.38 0.25 0.10 16 21 N 0.04 0.33 4.45 -46.46 -0.21 0.13 16 22 O -0.19 -1.91 18.44 18.89 0.35 -1.57 16 23 O -0.17 -2.11 14.62 25.11 0.37 -1.75 16 24 C -0.04 0.03 5.26 -19.86 -0.10 -0.08 16 25 C -0.09 0.00 1.74 71.24 0.12 0.12 16 26 O -0.54 -0.59 11.79 -129.60 -1.53 -2.12 16 27 Si 0.79 -4.21 29.91 68.60 2.05 -2.16 16 28 C -0.16 0.86 7.65 22.35 0.17 1.03 16 29 H 0.09 -1.42 7.67 -2.39 -0.02 -1.43 16 30 H 0.12 -1.38 8.14 -2.39 -0.02 -1.40 16 31 H 0.08 -1.05 7.65 -2.38 -0.02 -1.07 16 32 H 0.13 -1.35 7.66 -2.39 -0.02 -1.37 16 33 H 0.13 -1.34 7.66 -2.39 -0.02 -1.36 16 34 H 0.42 -5.59 8.71 -92.71 -0.81 -6.40 16 35 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.10 -0.49 7.90 -2.39 -0.02 -0.51 16 37 H 0.10 -0.68 7.85 -2.39 -0.02 -0.70 16 38 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 40 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.11 -1.44 8.07 -2.38 -0.02 -1.46 16 43 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.18 -0.99 5.85 -2.91 -0.02 -1.01 16 45 H 0.11 0.55 6.07 -2.39 -0.01 0.53 16 46 H 0.39 -3.48 8.70 -74.06 -0.64 -4.13 16 47 H -0.27 0.54 7.11 99.48 0.71 1.25 16 48 H -0.29 -0.78 7.11 99.48 0.71 -0.07 16 49 H 0.19 -2.42 3.36 -2.91 -0.01 -2.43 16 Total: 0.00 -33.79 422.41 1.19 -32.60 By element: Atomic # 1 Polarization: -23.70 SS G_CDS: -0.38 Total: -24.08 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 5.36 Total: 8.68 kcal Atomic # 7 Polarization: 4.21 SS G_CDS: -2.57 Total: 1.65 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -2.01 Total: -14.87 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.05 Total: -2.16 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -1.26 Total: -1.81 kcal Total: -33.79 1.19 -32.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.423 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds