Wall clock time and date at job start Sun Mar 7 2021 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 102.99590 * 2 1 4 4 C 1.53005 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.84903 * 316.18958 * 4 3 2 6 6 C 1.53775 * 113.69423 * 87.46553 * 4 3 2 7 7 C 1.53778 * 87.08325 * 139.98903 * 6 4 3 8 8 H 1.09007 * 113.68916 * 89.12829 * 7 6 4 9 9 N 1.46500 * 113.61622 * 220.01711 * 7 6 4 10 10 C 1.34776 * 120.00035 * 252.50310 * 9 7 6 11 11 O 1.21560 * 120.00048 * 359.97438 * 10 9 7 12 12 C 1.47850 * 119.99995 * 180.02562 * 10 9 7 13 13 C 1.39549 * 120.14259 * 179.97438 * 12 10 9 14 14 C 1.50702 * 120.07772 * 359.97438 * 13 12 10 15 15 O 1.42902 * 109.47390 * 179.72912 * 14 13 12 16 16 C 1.35898 * 116.99730 * 180.02562 * 15 14 13 17 17 C 1.38715 * 120.05279 * 179.97438 * 16 15 14 18 18 C 1.38166 * 119.94528 * 180.02562 * 17 16 15 19 19 C 1.50695 * 119.97278 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47329 * 65.00122 * 19 18 17 21 21 Si 1.86294 * 109.47102 * 185.00416 * 19 18 17 22 22 C 1.38243 * 120.05257 * 0.02562 * 18 17 16 23 23 C 1.38289 * 120.11231 * 0.02562 * 22 18 17 24 24 C 1.38117 * 120.05983 * 359.97438 * 23 22 18 25 25 C 1.37979 * 119.85363 * 179.72533 * 13 12 10 26 26 C 1.38345 * 120.14034 * 0.27056 * 25 13 12 27 27 C 1.38381 * 120.29481 * 0.02562 * 26 25 13 28 28 C 1.37939 * 120.14378 * 359.97174 * 27 26 25 29 29 C 1.53783 * 87.08268 * 334.56766 * 7 6 4 30 30 H 1.08999 * 109.46634 * 60.00783 * 1 2 3 31 31 H 1.09005 * 109.46495 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47568 * 300.00286 * 1 2 3 33 33 H 1.09004 * 109.47365 * 59.99790 * 3 2 1 34 34 H 1.09000 * 109.47393 * 299.99632 * 3 2 1 35 35 H 1.09002 * 113.61072 * 25.44042 * 6 4 3 36 36 H 1.09001 * 113.61302 * 254.54632 * 6 4 3 37 37 H 0.97002 * 119.99895 * 72.49349 * 9 7 6 38 38 H 1.09000 * 109.47047 * 59.72306 * 14 13 12 39 39 H 1.09007 * 109.46658 * 299.72841 * 14 13 12 40 40 H 1.08002 * 120.02716 * 359.74939 * 17 16 15 41 41 H 1.09005 * 109.47077 * 305.00322 * 19 18 17 42 42 H 0.96701 * 113.99470 * 59.99803 * 20 19 18 43 43 H 1.48503 * 110.00243 * 180.02562 * 21 19 18 44 44 H 1.48501 * 110.00108 * 301.31480 * 21 19 18 45 45 H 1.08000 * 119.94011 * 179.97438 * 22 18 17 46 46 H 1.08001 * 119.96912 * 179.97438 * 23 22 18 47 47 H 1.07995 * 120.03380 * 179.97438 * 24 23 22 48 48 H 1.07997 * 119.93122 * 180.25501 * 25 13 12 49 49 H 1.08003 * 119.85399 * 179.97438 * 26 25 13 50 50 H 1.07992 * 119.92858 * 179.97438 * 27 26 25 51 51 H 1.07997 * 120.07193 * 180.02562 * 28 27 26 52 52 H 1.09000 * 113.61510 * 139.97695 * 29 7 6 53 53 H 1.08999 * 113.61135 * 270.88498 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9401 0.0006 5 1 4.2442 1.2676 0.6963 6 6 4.3639 1.9477 -1.4058 7 6 5.2888 3.0697 -0.9054 8 1 6.2142 2.7074 -0.4574 9 7 5.5113 4.1304 -1.8911 10 6 6.7034 4.2349 -2.5111 11 8 7.5942 3.4494 -2.2521 12 6 6.9280 5.3057 -3.5056 13 6 8.1614 5.4171 -4.1489 14 6 9.2692 4.4459 -3.8315 15 8 10.4197 4.7621 -4.6179 16 6 11.5156 3.9758 -4.4516 17 6 12.6673 4.2256 -5.1833 18 6 13.7800 3.4245 -5.0129 19 6 15.0317 3.6957 -5.8071 20 8 15.5702 4.9643 -5.4292 21 14 16.2859 2.3616 -5.4643 22 6 13.7461 2.3745 -4.1144 23 6 12.5988 2.1227 -3.3845 24 6 11.4838 2.9206 -3.5512 25 6 8.3627 6.4152 -5.0801 26 6 7.3469 7.3078 -5.3723 27 6 6.1236 7.2066 -4.7334 28 6 5.9093 6.2134 -3.8005 29 6 4.1960 3.4043 0.1236 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8030 2.2372 0.8900 34 1 1.8031 2.2372 -0.8900 35 1 3.6734 2.2667 -2.1866 36 1 4.8904 1.0265 -1.6555 37 1 4.8005 4.7574 -2.0977 38 1 8.9402 3.4322 -4.0600 39 1 9.5218 4.5161 -2.7734 40 1 12.6927 5.0429 -5.8890 41 1 14.7924 3.7048 -6.8706 42 1 15.8064 5.0283 -4.4937 43 1 17.5253 2.6178 -6.2412 44 1 16.5970 2.3177 -4.0129 45 1 14.6168 1.7492 -3.9830 46 1 12.5747 1.3015 -2.6835 47 1 10.5879 2.7234 -2.9813 48 1 9.3153 6.4999 -5.5817 49 1 7.5097 8.0875 -6.1016 50 1 5.3349 7.9068 -4.9657 51 1 4.9540 6.1353 -3.3029 52 1 4.5870 3.6590 1.1086 53 1 3.4597 4.1215 -0.2392 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_4557126.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:24 Heat of formation + Delta-G solvation = -16.575702 kcal Electronic energy + Delta-G solvation = -33897.172272 eV Core-core repulsion = 29406.987560 eV Total energy + Delta-G solvation = -4490.184712 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.154 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.84451 -41.22626 -40.27976 -39.20917 -38.85359 -37.39248 -35.12952 -33.32267 -32.53292 -32.31817 -31.03274 -30.48185 -29.60076 -27.90789 -26.73021 -26.68820 -25.28533 -23.93695 -23.56749 -22.77976 -21.86514 -21.59709 -20.66800 -19.19550 -18.89510 -18.02104 -17.77399 -17.42448 -17.20900 -17.16639 -16.99350 -16.51861 -16.40887 -16.22260 -16.04383 -16.01860 -15.63159 -15.45587 -15.22130 -14.90256 -14.71815 -14.62491 -14.55654 -14.25281 -14.14358 -14.02500 -13.80150 -13.70095 -13.45116 -13.39077 -13.34808 -13.03289 -12.91195 -12.80698 -12.53859 -12.22725 -12.21284 -12.10832 -11.99314 -11.61152 -11.57112 -11.47753 -10.90525 -10.87366 -10.67065 -10.26264 -10.00113 -9.96991 -9.82034 -9.30409 -8.70425 -4.90873 -0.27292 0.16265 0.25669 0.35690 0.73666 1.28621 1.61185 1.68511 1.74700 1.90514 2.03741 2.04528 2.62114 2.72384 3.38419 3.41110 3.52178 3.54291 3.57328 3.64262 3.72557 3.78314 3.80674 3.84305 4.02807 4.07911 4.17279 4.20538 4.23214 4.23465 4.30055 4.31597 4.33974 4.34695 4.40500 4.45301 4.52426 4.53705 4.65030 4.70627 4.71366 4.78348 4.81061 4.87181 4.89796 4.94130 4.99377 5.04206 5.17821 5.20671 5.22839 5.33157 5.35797 5.40438 5.43635 5.53183 5.69088 5.81817 6.30410 6.42754 6.45397 7.07977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.329 6.329 3 C -0.057 4.057 4 C -0.090 4.090 5 H 0.092 0.908 6 C -0.140 4.140 7 C 0.118 3.882 8 H 0.097 0.903 9 N -0.698 5.698 10 C 0.555 3.445 11 O -0.572 6.572 12 C -0.148 4.148 13 C -0.054 4.054 14 C 0.118 3.882 15 O -0.327 6.327 16 C 0.116 3.884 17 C -0.139 4.139 18 C -0.080 4.080 19 C -0.087 4.087 20 O -0.548 6.548 21 Si 0.777 3.223 22 C -0.157 4.157 23 C -0.075 4.075 24 C -0.210 4.210 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.123 4.123 28 C -0.076 4.076 29 C -0.118 4.118 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.415 0.585 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.386 0.614 43 H -0.300 1.300 44 H -0.280 1.280 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.151 0.849 50 H 0.162 0.838 51 H 0.162 0.838 52 H 0.085 0.915 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 2.108 0.984 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.104 6.104 3 C -0.205 4.205 4 C -0.110 4.110 5 H 0.110 0.890 6 C -0.179 4.179 7 C 0.013 3.987 8 H 0.116 0.884 9 N -0.350 5.350 10 C 0.344 3.656 11 O -0.453 6.453 12 C -0.151 4.151 13 C -0.055 4.055 14 C 0.044 3.956 15 O -0.242 6.242 16 C 0.071 3.929 17 C -0.158 4.158 18 C -0.081 4.081 19 C -0.195 4.195 20 O -0.356 6.356 21 Si 0.682 3.318 22 C -0.174 4.174 23 C -0.092 4.092 24 C -0.229 4.229 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.141 4.141 28 C -0.095 4.095 29 C -0.158 4.158 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.254 0.746 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.235 0.765 43 H -0.228 1.228 44 H -0.206 1.206 45 H 0.166 0.834 46 H 0.169 0.831 47 H 0.149 0.851 48 H 0.150 0.850 49 H 0.169 0.831 50 H 0.180 0.820 51 H 0.179 0.821 52 H 0.104 0.896 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.213 0.776 0.743 6.305 hybrid contribution -1.021 1.893 0.770 2.284 sum -7.234 2.669 1.513 7.858 Atomic orbital electron populations 1.23396 0.91564 1.07136 1.05794 1.87336 1.10415 1.14407 1.98200 1.23376 0.98773 0.92271 1.06041 1.22037 0.92758 0.98126 0.98083 0.88981 1.23523 0.98559 0.98654 0.97167 1.22504 0.98261 0.88130 0.89806 0.88447 1.45752 1.14201 1.33409 1.41606 1.18527 0.82648 0.83714 0.80735 1.90739 1.44101 1.44825 1.65607 1.19683 0.95278 0.99245 1.00894 1.19726 0.93025 0.96158 0.96605 1.21496 0.82152 0.97556 0.94398 1.85931 1.21040 1.53909 1.63292 1.19169 0.87147 0.90981 0.95586 1.20326 0.90814 1.02397 1.02264 1.20164 0.95275 0.95333 0.97305 1.25368 0.97553 0.94129 1.02488 1.86575 1.83513 1.33013 1.32495 0.93834 0.75707 0.84021 0.78252 1.21204 0.99597 0.98659 0.97959 1.21219 0.91471 0.98493 0.98062 1.21543 1.01435 0.97946 1.01975 1.21117 1.00748 0.94724 0.97505 1.21770 0.92750 0.97843 0.98454 1.21576 0.98025 0.98635 0.95821 1.21591 0.98211 0.92869 0.96786 1.23374 0.96987 0.95798 0.99613 0.89544 0.87906 0.89536 0.88672 0.88695 0.88532 0.92449 0.74579 0.90535 0.90685 0.85378 0.85715 0.76468 1.22825 1.20615 0.83402 0.83088 0.85071 0.85028 0.83114 0.82016 0.82093 0.89610 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.41 10.76 113.37 1.22 1.63 16 2 S -0.33 -0.51 22.37 -56.49 -1.26 -1.77 16 3 C -0.06 0.27 5.78 71.98 0.42 0.68 16 4 C -0.09 0.38 3.65 -10.27 -0.04 0.34 16 5 H 0.09 -0.13 8.13 -2.39 -0.02 -0.15 16 6 C -0.14 0.32 7.43 31.12 0.23 0.55 16 7 C 0.12 -0.28 4.24 45.52 0.19 -0.08 16 8 H 0.10 0.25 7.46 -2.38 -0.02 0.23 16 9 N -0.70 2.10 5.31 -442.89 -2.35 -0.25 16 10 C 0.55 2.28 7.75 86.79 0.67 2.95 16 11 O -0.57 -6.28 13.01 -3.90 -0.05 -6.33 16 12 C -0.15 -0.37 5.87 -20.09 -0.12 -0.49 16 13 C -0.05 -0.33 5.91 -19.61 -0.12 -0.44 16 14 C 0.12 1.03 3.38 71.24 0.24 1.27 16 15 O -0.33 -3.27 8.62 -92.40 -0.80 -4.06 16 16 C 0.12 1.08 6.69 22.51 0.15 1.23 16 17 C -0.14 -1.07 9.62 22.37 0.22 -0.85 16 18 C -0.08 -0.33 5.35 -19.88 -0.11 -0.44 16 19 C -0.09 -0.18 2.80 71.23 0.20 0.02 16 20 O -0.55 -2.86 12.83 -148.98 -1.91 -4.77 16 21 Si 0.78 -0.47 29.88 68.60 2.05 1.58 16 22 C -0.16 -0.34 8.67 22.28 0.19 -0.15 16 23 C -0.07 -0.25 10.04 22.25 0.22 -0.03 16 24 C -0.21 -1.52 9.04 22.36 0.20 -1.32 16 25 C -0.12 -0.45 9.37 22.23 0.21 -0.25 16 26 C -0.09 0.15 10.04 22.33 0.22 0.37 16 27 C -0.12 0.60 10.03 22.23 0.22 0.82 16 28 C -0.08 0.32 9.54 22.53 0.21 0.54 16 29 C -0.12 0.89 7.39 31.12 0.23 1.12 16 30 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.10 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.09 -0.66 7.85 -2.39 -0.02 -0.68 16 35 H 0.10 -0.39 7.90 -2.39 -0.02 -0.41 16 36 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 -3.99 6.76 -92.71 -0.63 -4.62 16 38 H 0.08 0.80 6.84 -2.39 -0.02 0.78 16 39 H 0.08 0.78 6.89 -2.38 -0.02 0.76 16 40 H 0.13 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.13 0.07 7.96 -2.38 -0.02 0.05 16 42 H 0.39 -0.15 8.70 -74.06 -0.64 -0.80 16 43 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 44 H -0.28 -0.75 7.01 99.48 0.70 -0.05 16 45 H 0.15 -0.36 4.84 -2.91 -0.01 -0.37 16 46 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 47 H 0.13 0.99 6.30 -2.91 -0.02 0.97 16 48 H 0.13 0.60 7.00 -2.91 -0.02 0.58 16 49 H 0.15 -0.92 8.06 -2.91 -0.02 -0.94 16 50 H 0.16 -1.75 8.06 -2.91 -0.02 -1.77 16 51 H 0.16 -1.89 6.41 -2.91 -0.02 -1.91 16 52 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 53 H 0.11 -1.32 8.08 -2.39 -0.02 -1.34 16 Total: 0.00 -21.25 441.68 0.26 -20.99 By element: Atomic # 1 Polarization: -12.56 SS G_CDS: -0.29 Total: -12.85 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 4.88 Total: 7.47 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.35 Total: -0.25 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -2.76 Total: -15.16 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.05 Total: 1.58 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.26 Total: -1.77 kcal Total: -21.25 0.26 -20.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_4557126.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.413 kcal (2) G-P(sol) polarization free energy of solvation -21.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds