Wall clock time and date at job start Sun Mar 7 2021 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00000 * 2 1 4 4 C 1.38616 * 120.02465 * 180.22325 * 3 2 1 5 5 C 1.38658 * 119.88754 * 180.27339 * 4 3 2 6 6 O 1.35897 * 120.02362 * 179.77139 * 5 4 3 7 7 C 1.42899 * 117.00375 * 359.72898 * 6 5 4 8 8 C 1.50700 * 109.47143 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27800 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 H 1.09001 * 112.85727 * 336.19659 * 11 10 8 13 13 C 1.53787 * 113.61668 * 107.50061 * 11 10 8 14 14 C 1.53781 * 87.08251 * 139.97598 * 13 11 10 15 15 H 1.08999 * 113.68742 * 89.12782 * 14 13 11 16 16 C 1.52997 * 113.61404 * 220.02018 * 14 13 11 17 17 S 1.81409 * 109.47074 * 272.49806 * 16 14 13 18 18 C 1.81401 * 102.99791 * 180.02562 * 17 16 14 19 19 C 1.53778 * 87.08300 * 334.57183 * 14 13 11 20 20 C 1.38753 * 119.94420 * 359.50445 * 5 4 3 21 21 C 1.50697 * 119.96994 * 180.27577 * 20 5 4 22 22 O 1.42895 * 109.47601 * 74.99456 * 21 20 5 23 23 Si 1.86300 * 109.46910 * 194.99568 * 21 20 5 24 24 C 1.38194 * 120.05277 * 0.24580 * 20 5 4 25 25 C 1.38148 * 120.11349 * 0.02562 * 24 20 5 26 26 H 1.08998 * 109.47570 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47497 * 300.00583 * 1 2 3 28 28 H 1.09002 * 109.46928 * 60.00083 * 1 2 3 29 29 H 1.07999 * 120.05707 * 0.02685 * 4 3 2 30 30 H 1.09009 * 109.46798 * 59.99546 * 7 6 5 31 31 H 1.08998 * 109.46844 * 300.00050 * 7 6 5 32 32 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 33 33 H 1.08994 * 113.61696 * 254.52995 * 13 11 10 34 34 H 1.09001 * 113.61190 * 25.42986 * 13 11 10 35 35 H 1.08997 * 109.47381 * 32.49745 * 16 14 13 36 36 H 1.08996 * 109.47187 * 152.49986 * 16 14 13 37 37 H 1.09003 * 109.47172 * 60.00221 * 18 17 16 38 38 H 1.09001 * 109.46794 * 179.97438 * 18 17 16 39 39 H 1.08997 * 109.46915 * 300.00199 * 18 17 16 40 40 H 1.09002 * 113.61341 * 270.88560 * 19 14 13 41 41 H 1.08992 * 113.61647 * 139.98216 * 19 14 13 42 42 H 1.09005 * 109.46887 * 314.99337 * 21 20 5 43 43 H 0.96698 * 114.00088 * 59.99818 * 22 21 20 44 44 H 1.48503 * 109.99906 * 58.67914 * 23 21 20 45 45 H 1.48500 * 109.99991 * 179.97438 * 23 21 20 46 46 H 1.08003 * 119.94317 * 180.02562 * 24 20 5 47 47 H 1.08003 * 119.97300 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4302 1.2840 -0.0047 5 6 4.0567 2.5210 0.0011 6 8 5.4136 2.5959 0.0012 7 6 6.1316 1.3604 0.0013 8 6 7.6125 1.6400 0.0008 9 8 8.0135 2.7846 -0.0001 10 7 8.4912 0.6180 -0.0049 11 6 9.9307 0.8899 -0.0115 12 1 10.1742 1.8720 -0.4166 13 6 10.6212 0.5859 1.3286 14 6 11.7898 0.0160 0.5074 15 1 12.5433 0.7584 0.2445 16 6 12.3930 -1.2580 1.1022 17 16 13.6804 -0.8149 2.3011 18 6 14.2661 -2.4290 2.8860 19 6 10.7701 -0.2499 -0.6126 20 6 3.2971 3.6821 0.0011 21 6 3.9775 5.0267 0.0011 22 8 4.5038 5.2944 -1.3002 23 14 2.7440 6.3468 0.4556 24 6 1.9173 3.6064 0.0005 25 6 1.2906 2.3752 0.0005 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0196 0.3791 -0.0088 30 1 5.8699 0.7880 -0.8888 31 1 5.8698 0.7881 0.8912 32 1 8.1704 -0.2974 -0.0046 33 1 10.8817 1.4781 1.8979 34 1 10.1022 -0.1628 1.9272 35 1 11.6120 -1.8305 1.6027 36 1 12.8302 -1.8594 0.3053 37 1 14.6566 -3.0008 2.0442 38 1 15.0556 -2.2836 3.6234 39 1 13.4385 -2.9725 3.3417 40 1 10.2918 -1.2270 -0.5447 41 1 11.1509 -0.0323 -1.6104 42 1 4.7899 5.0229 0.7278 43 1 3.8353 5.3128 -1.9987 44 1 2.1658 6.0626 1.7936 45 1 3.4027 7.6777 0.4597 46 1 1.3277 4.5114 0.0001 47 1 0.2121 2.3188 -0.0004 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_4974312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:35 Heat of formation + Delta-G solvation = -84.294713 kcal Electronic energy + Delta-G solvation = -28551.293003 eV Core-core repulsion = 24407.931764 eV Total energy + Delta-G solvation = -4143.361240 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.87070 -41.22609 -40.15614 -39.38545 -38.25087 -36.92158 -34.98861 -32.29496 -31.58465 -30.80027 -29.79304 -29.05258 -28.33323 -26.75645 -26.11780 -24.39634 -23.16269 -22.49062 -21.74756 -20.67628 -19.94714 -18.57944 -18.04171 -17.99104 -17.58831 -17.50835 -17.16550 -16.78029 -16.67891 -16.51804 -16.38734 -15.97681 -15.63868 -15.55598 -15.14008 -15.11115 -14.70237 -14.64917 -14.46623 -14.24996 -13.88274 -13.84078 -13.51924 -13.47302 -13.42670 -13.32593 -13.16392 -12.95884 -12.48165 -12.27417 -12.18107 -12.00481 -11.87106 -11.62925 -11.61099 -11.52591 -11.01519 -10.90289 -10.36048 -10.17742 -9.70438 -9.10444 -8.72853 -5.04398 0.20449 0.29838 0.71470 1.31160 1.36845 1.43618 1.64139 1.66855 1.98304 2.25090 2.55914 2.58059 3.37785 3.48790 3.51593 3.60146 3.69719 3.73128 3.74580 3.83031 3.91843 4.01286 4.08117 4.16226 4.20844 4.28292 4.29946 4.32393 4.34578 4.39430 4.43982 4.46724 4.51577 4.60887 4.68647 4.72474 4.78544 4.80146 4.85476 4.94983 5.01500 5.01913 5.16960 5.23281 5.27637 5.46262 5.50318 6.11909 6.35555 6.42416 6.86177 7.08017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.254 4.254 5 C 0.172 3.828 6 O -0.306 6.306 7 C 0.035 3.965 8 C 0.513 3.487 9 O -0.571 6.571 10 N -0.697 5.697 11 C 0.116 3.884 12 H 0.090 0.910 13 C -0.141 4.141 14 C -0.091 4.091 15 H 0.090 0.910 16 C -0.056 4.056 17 S -0.332 6.332 18 C -0.110 4.110 19 C -0.114 4.114 20 C -0.203 4.203 21 C -0.069 4.069 22 O -0.558 6.558 23 Si 0.796 3.204 24 C -0.031 4.031 25 C -0.237 4.237 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.422 0.578 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.391 0.609 44 H -0.280 1.280 45 H -0.304 1.304 46 H 0.167 0.833 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -9.330 -2.376 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.273 4.273 5 C 0.126 3.874 6 O -0.218 6.218 7 C -0.043 4.043 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.351 5.351 11 C 0.011 3.989 12 H 0.108 0.892 13 C -0.180 4.180 14 C -0.111 4.111 15 H 0.109 0.891 16 C -0.203 4.203 17 S -0.107 6.107 18 C -0.278 4.278 19 C -0.154 4.154 20 C -0.205 4.205 21 C -0.177 4.177 22 O -0.365 6.365 23 Si 0.701 3.299 24 C -0.049 4.049 25 C -0.256 4.256 26 H 0.134 0.866 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.170 0.830 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.240 0.760 44 H -0.207 1.207 45 H -0.233 1.233 46 H 0.184 0.816 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.710 -6.944 -1.169 9.065 hybrid contribution 0.316 -1.815 0.135 1.847 sum -5.393 -8.759 -1.034 10.338 Atomic orbital electron populations 1.23411 0.75934 1.05710 1.02785 1.86054 1.23823 1.26570 1.87937 1.18875 0.91586 0.85091 0.92717 1.20545 0.93541 0.97303 1.15889 1.18641 0.81678 0.93359 0.93700 1.86225 1.15689 1.31739 1.88181 1.22749 0.88429 0.86488 1.06617 1.20549 0.88632 0.85313 0.75619 1.90778 1.80786 1.23421 1.49966 1.45649 1.05614 1.09427 1.74381 1.22486 0.78379 1.00203 0.97798 0.89161 1.23545 0.96359 1.01417 0.96701 1.22033 0.95732 0.96264 0.97035 0.89144 1.23370 0.97899 1.00348 0.98722 1.87372 1.49893 1.17573 1.55838 1.23395 1.04814 0.94831 1.04769 1.23362 0.94625 0.98939 0.98477 1.19748 0.93867 0.93988 1.12856 1.25143 1.04360 0.99775 0.88458 1.86542 1.39295 1.93715 1.16971 0.94139 0.80283 0.73009 0.82513 1.20862 0.91474 0.98654 0.93863 1.21450 1.01809 0.91148 1.11173 0.86618 0.91348 0.91024 0.83012 0.85901 0.86129 0.73964 0.92806 0.88151 0.88560 0.88525 0.89471 0.87906 0.89496 0.86572 0.89565 0.90313 0.76004 1.20657 1.23289 0.81626 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.14 10.49 -92.42 -0.97 -1.11 16 3 C 0.16 0.24 6.68 22.49 0.15 0.39 16 4 C -0.25 -0.64 8.97 22.46 0.20 -0.44 16 5 C 0.17 1.11 6.66 22.49 0.15 1.26 16 6 O -0.31 -3.01 8.99 -73.36 -0.66 -3.67 16 7 C 0.04 0.03 5.22 71.24 0.37 0.40 16 8 C 0.51 3.05 7.91 87.66 0.69 3.74 16 9 O -0.57 -10.47 16.10 16.00 0.26 -10.21 16 10 N -0.70 1.59 5.35 -440.02 -2.36 -0.77 16 11 C 0.12 -0.02 4.24 45.52 0.19 0.17 16 12 H 0.09 0.56 7.46 -2.39 -0.02 0.54 16 13 C -0.14 0.06 7.43 31.12 0.23 0.29 16 14 C -0.09 0.24 3.66 -10.27 -0.04 0.20 16 15 H 0.09 0.05 8.13 -2.39 -0.02 0.03 16 16 C -0.06 0.20 5.78 71.98 0.42 0.62 16 17 S -0.33 -0.91 22.37 -56.49 -1.26 -2.17 16 18 C -0.11 0.32 10.76 113.37 1.22 1.54 16 19 C -0.11 0.72 7.39 31.12 0.23 0.95 16 20 C -0.20 -0.97 5.27 -19.75 -0.10 -1.08 16 21 C -0.07 -0.48 2.37 71.23 0.17 -0.31 16 22 O -0.56 -4.71 12.88 -148.98 -1.92 -6.63 16 23 Si 0.80 0.92 29.91 68.60 2.05 2.98 16 24 C -0.03 0.04 8.65 22.24 0.19 0.23 16 25 C -0.24 0.42 9.04 22.38 0.20 0.62 16 26 H 0.12 -1.13 8.14 -2.39 -0.02 -1.15 16 27 H 0.07 -0.60 7.66 -2.39 -0.02 -0.61 16 28 H 0.07 -0.66 7.66 -2.39 -0.02 -0.68 16 29 H 0.15 -0.28 6.30 -2.91 -0.02 -0.30 16 30 H 0.12 -0.65 7.65 -2.38 -0.02 -0.66 16 31 H 0.12 -0.62 7.67 -2.39 -0.02 -0.64 16 32 H 0.42 -4.43 8.73 -92.71 -0.81 -5.24 16 33 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 35 H 0.10 -0.60 7.84 -2.39 -0.02 -0.62 16 36 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.12 -1.30 8.08 -2.39 -0.02 -1.31 16 41 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.08 1.02 7.82 -2.38 -0.02 1.00 16 43 H 0.39 -0.68 8.70 -74.06 -0.64 -1.32 16 44 H -0.28 -1.34 7.11 99.48 0.71 -0.64 16 45 H -0.30 -2.85 7.11 99.48 0.71 -2.15 16 46 H 0.17 -1.28 5.12 -2.91 -0.01 -1.29 16 47 H 0.16 -1.21 6.29 -2.91 -0.02 -1.23 16 Total: 0.00 -30.82 400.16 0.12 -30.71 By element: Atomic # 1 Polarization: -18.30 SS G_CDS: -0.41 Total: -18.71 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.39 Total: 9.58 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -2.36 Total: -0.77 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -3.29 Total: -21.62 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: 2.05 Total: 2.98 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -1.26 Total: -2.17 kcal Total: -30.82 0.12 -30.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_4974312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.589 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds