Wall clock time and date at job start Sun Mar 7 2021 05:31:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81397 * 1
3 3 C 1.81395 * 103.00420 * 2 1
4 4 C 1.52998 * 109.47387 * 180.02562 * 3 2 1
5 5 H 1.09005 * 112.84910 * 43.79916 * 4 3 2
6 6 C 1.53778 * 113.61858 * 174.99851 * 4 3 2
7 7 C 1.53782 * 87.08188 * 140.06215 * 6 4 3
8 8 H 1.09000 * 113.61193 * 89.20632 * 7 6 4
9 9 N 1.46502 * 113.61382 * 220.02258 * 7 6 4
10 10 C 1.34778 * 119.99609 * 203.47312 * 9 7 6
11 11 O 1.21697 * 119.99912 * 354.86020 * 10 9 7
12 12 C 1.46674 * 119.99758 * 174.85908 * 10 9 7
13 13 C 1.37886 * 126.22560 * 5.32919 * 12 10 9
14 14 C 1.39872 * 107.08851 * 179.97438 * 13 12 10
15 15 Br 1.89104 * 126.07128 * 180.02562 * 14 13 12
16 16 C 1.35503 * 107.85966 * 0.02562 * 14 13 12
17 17 C 1.50697 * 125.57348 * 179.97438 * 16 14 13
18 18 O 1.42898 * 109.47357 * 115.24454 * 17 16 14
19 19 Si 1.86304 * 109.47062 * 235.23997 * 17 16 14
20 20 N 1.35600 * 108.85533 * 0.23609 * 16 14 13
21 21 C 1.46492 * 125.68002 * 179.75361 * 20 16 14
22 22 C 1.53784 * 87.17305 * 334.61159 * 7 6 4
23 23 H 1.09005 * 109.46863 * 59.99695 * 1 2 3
24 24 H 1.08991 * 109.47509 * 180.02562 * 1 2 3
25 25 H 1.08997 * 109.46897 * 300.00574 * 1 2 3
26 26 H 1.08995 * 109.47354 * 59.99904 * 3 2 1
27 27 H 1.09004 * 109.47163 * 299.99933 * 3 2 1
28 28 H 1.09003 * 113.61236 * 25.51496 * 6 4 3
29 29 H 1.08994 * 113.68935 * 254.62873 * 6 4 3
30 30 H 0.96996 * 120.00346 * 23.46989 * 9 7 6
31 31 H 1.07996 * 126.45211 * 359.97438 * 13 12 10
32 32 H 1.08996 * 109.47566 * 355.23672 * 17 16 14
33 33 H 0.96694 * 114.00242 * 59.99415 * 18 17 16
34 34 H 1.48511 * 109.99747 * 63.68337 * 19 17 16
35 35 H 1.48502 * 110.00112 * 185.00477 * 19 17 16
36 36 H 1.09003 * 109.47203 * 95.40101 * 21 20 16
37 37 H 1.08999 * 109.47524 * 215.39899 * 21 20 16
38 38 H 1.09007 * 109.47015 * 335.40218 * 21 20 16
39 39 H 1.08997 * 113.61069 * 139.93786 * 22 7 6
40 40 H 1.08999 * 113.61404 * 270.83946 * 22 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2222 1.7674 0.0000
4 6 3.7424 1.9398 -0.0006
5 1 4.2444 1.2672 -0.6962
6 6 4.1964 3.4039 -0.1235
7 6 5.2890 3.0693 0.9055
8 1 6.2143 2.7069 0.4576
9 7 5.5114 4.1300 1.8913
10 6 6.6931 4.2157 2.5339
11 8 7.5408 3.3590 2.3654
12 6 6.9572 5.3415 3.4361
13 6 6.0589 6.3224 3.7998
14 6 6.7275 7.1899 4.6698
15 35 5.9932 8.7261 5.4925
16 6 7.9949 6.7340 4.8185
17 6 9.0612 7.3710 5.6719
18 8 9.4133 6.4838 6.7353
19 14 10.5656 7.7185 4.6294
20 7 8.1486 5.6143 4.0693
21 6 9.3769 4.8242 3.9557
22 6 4.3661 1.9460 1.4069
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8899
26 1 1.8033 2.2371 0.8899
27 1 1.8033 2.2371 -0.8900
28 1 3.4601 4.1212 0.2391
29 1 4.5874 3.6600 -1.1081
30 1 4.8084 4.7705 2.0815
31 1 5.0325 6.4051 3.4743
32 1 8.6838 8.3051 6.0879
33 1 9.7576 5.6305 6.4380
34 1 10.2341 8.7087 3.5734
35 1 11.6664 8.2346 5.4822
36 1 9.3421 3.9949 4.6623
37 1 9.4657 4.4341 2.9418
38 1 10.2371 5.4556 4.1787
39 1 4.8941 1.0255 1.6556
40 1 3.6763 2.2640 2.1887
There are 55 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 55
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16534458_5000100.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:31:39
Heat of formation + Delta-G solvation = 11.216720 kcal
Electronic energy + Delta-G solvation = -23578.822745 eV
Core-core repulsion = 19955.487422 eV
Total energy + Delta-G solvation = -3623.335324 eV
No. of doubly occupied orbitals = 55
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 375.029 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.91391 -41.05130 -39.31654 -37.89493 -35.25417 -34.32004 -32.26693 -31.07087
-30.54942 -29.73107 -27.49228 -27.12892 -26.86470 -24.17303 -22.78407 -21.57456
-21.16256 -20.34943 -18.98317 -18.11277 -17.75377 -17.21887 -17.05343 -16.72809
-16.46295 -16.08910 -15.73112 -15.67293 -15.16072 -14.82628 -14.69967 -14.45572
-14.35066 -14.32912 -14.21885 -13.95317 -13.81843 -13.60886 -13.50874 -13.31641
-13.02120 -12.90081 -12.29139 -12.24056 -11.90352 -11.70139 -11.57040 -11.25477
-11.00317 -10.94162 -10.83700 -10.18749 -9.82505 -9.27280 -8.66673 -5.24568
0.14108 0.64186 0.65761 0.89990 1.17779 1.39972 1.51710 1.59098
1.81902 2.16807 2.20663 3.11813 3.27952 3.35821 3.40505 3.43521
3.55423 3.61820 3.68074 3.88642 4.05124 4.12242 4.13995 4.15744
4.17019 4.19768 4.37486 4.40267 4.44313 4.53650 4.61353 4.62435
4.70832 4.73057 4.86264 4.96662 5.12989 5.22471 5.43148 5.53767
5.76691 6.22775 6.33176 7.03270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 S -0.262 6.262
3 C -0.073 4.073
4 C -0.092 4.092
5 H 0.105 0.895
6 C -0.135 4.135
7 C 0.127 3.873
8 H 0.119 0.881
9 N -0.707 5.707
10 C 0.594 3.406
11 O -0.539 6.539
12 C -0.032 4.032
13 C -0.109 4.109
14 C -0.158 4.158
15 Br -0.021 7.021
16 C 0.052 3.948
17 C -0.048 4.048
18 O -0.528 6.528
19 Si 0.660 3.340
20 N -0.395 5.395
21 C 0.063 3.937
22 C -0.143 4.143
23 H 0.077 0.923
24 H 0.102 0.898
25 H 0.076 0.924
26 H 0.082 0.918
27 H 0.084 0.916
28 H 0.090 0.910
29 H 0.082 0.918
30 H 0.404 0.596
31 H 0.156 0.844
32 H 0.136 0.864
33 H 0.374 0.626
34 H -0.243 1.243
35 H -0.235 1.235
36 H 0.095 0.905
37 H 0.114 0.886
38 H 0.086 0.914
39 H 0.079 0.921
40 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.159 -0.457 -2.893 3.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 S -0.036 6.036
3 C -0.222 4.222
4 C -0.112 4.112
5 H 0.123 0.877
6 C -0.175 4.175
7 C 0.022 3.978
8 H 0.137 0.863
9 N -0.358 5.358
10 C 0.381 3.619
11 O -0.417 6.417
12 C -0.146 4.146
13 C -0.137 4.137
14 C -0.244 4.244
15 Br 0.064 6.936
16 C -0.069 4.069
17 C -0.159 4.159
18 O -0.332 6.332
19 Si 0.557 3.443
20 N -0.069 5.069
21 C -0.076 4.076
22 C -0.181 4.181
23 H 0.096 0.904
24 H 0.121 0.879
25 H 0.095 0.905
26 H 0.101 0.899
27 H 0.102 0.898
28 H 0.109 0.891
29 H 0.101 0.899
30 H 0.240 0.760
31 H 0.173 0.827
32 H 0.153 0.847
33 H 0.221 0.779
34 H -0.166 1.166
35 H -0.158 1.158
36 H 0.114 0.886
37 H 0.133 0.867
38 H 0.104 0.896
39 H 0.097 0.903
40 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 0.539 -0.511 -2.695 2.796
hybrid contribution -1.825 1.232 0.261 2.217
sum -1.286 0.721 -2.434 2.845
Atomic orbital electron populations
1.23398 0.94071 1.06761 1.04931 1.87069 1.07453 1.11022 1.98040
1.23381 0.99052 0.94737 1.04998 1.22134 0.92723 0.97383 0.98985
0.87708 1.23429 0.97703 0.96391 1.00002 1.22547 0.98612 0.87663
0.88935 0.86319 1.45621 1.15267 1.33040 1.41829 1.16848 0.82428
0.83493 0.79116 1.90834 1.45723 1.40640 1.64526 1.19997 0.87123
1.01206 1.06259 1.21218 0.99320 0.93595 0.99531 1.20787 0.95115
0.99955 1.08510 1.96682 1.83911 1.33074 1.79979 1.20706 0.96767
0.90563 0.98852 1.24853 1.01903 0.95879 0.93234 1.86627 1.85656
1.29498 1.31420 0.95419 0.78146 0.89974 0.80737 1.43694 1.10304
1.19897 1.32998 1.22502 0.82496 0.95275 1.07360 1.23582 0.98543
0.99603 0.96409 0.90446 0.87947 0.90468 0.89928 0.89755 0.89150
0.89926 0.76045 0.82688 0.84658 0.77935 1.16621 1.15836 0.88638
0.86723 0.89633 0.90259 0.89366
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 0.18 10.76 101.05 1.09 1.27 16
2 S -0.26 -0.14 22.37 -107.50 -2.40 -2.55 16
3 C -0.07 0.14 5.78 37.16 0.21 0.36 16
4 C -0.09 0.21 3.65 -89.72 -0.33 -0.12 16
5 H 0.10 -0.16 8.13 -51.93 -0.42 -0.58 16
6 C -0.14 0.47 7.39 -25.92 -0.19 0.28 16
7 C 0.13 -0.23 4.18 -67.11 -0.28 -0.51 16
8 H 0.12 -0.06 7.57 -51.93 -0.39 -0.45 16
9 N -0.71 1.21 5.35 -54.32 -0.29 0.92 16
10 C 0.59 0.50 7.77 -12.85 -0.10 0.40 16
11 O -0.54 -1.81 14.54 5.19 0.08 -1.73 16
12 C -0.03 -0.02 6.88 -81.98 -0.56 -0.58 16
13 C -0.11 -0.02 10.34 -39.10 -0.40 -0.42 16
14 C -0.16 -0.25 6.53 -39.95 -0.26 -0.51 16
15 Br -0.02 -0.04 33.06 -68.01 -2.25 -2.28 16
16 C 0.05 0.04 5.30 -81.91 -0.43 -0.39 16
17 C -0.05 -0.01 2.87 36.00 0.10 0.09 16
18 O -0.53 -0.17 12.88 -35.23 -0.45 -0.62 16
19 Si 0.66 -0.65 29.23 -169.99 -4.97 -5.62 16
20 N -0.40 0.03 3.10 -115.59 -0.36 -0.32 16
21 C 0.06 -0.19 8.82 59.84 0.53 0.34 16
22 C -0.14 0.23 7.45 -25.82 -0.19 0.03 16
23 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16
24 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16
25 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16
26 H 0.08 -0.20 7.86 -51.93 -0.41 -0.61 16
27 H 0.08 -0.21 8.14 -51.92 -0.42 -0.63 16
28 H 0.09 -0.41 8.07 -51.93 -0.42 -0.83 16
29 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16
30 H 0.40 -1.57 7.61 -40.82 -0.31 -1.88 16
31 H 0.16 -0.37 7.45 -52.49 -0.39 -0.76 16
32 H 0.14 0.14 6.96 -51.93 -0.36 -0.22 16
33 H 0.37 -1.32 7.47 45.56 0.34 -0.98 16
34 H -0.24 -0.45 7.11 56.52 0.40 -0.04 16
35 H -0.23 -0.32 7.11 56.52 0.40 0.08 16
36 H 0.10 -0.38 8.14 -51.93 -0.42 -0.80 16
37 H 0.11 -0.25 6.78 -51.93 -0.35 -0.61 16
38 H 0.09 -0.47 3.77 -51.92 -0.20 -0.66 16
39 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16
40 H 0.09 -0.15 7.91 -51.93 -0.41 -0.56 16
LS Contribution 359.03 15.07 5.41 5.41
Total: 0.00 -7.51 359.03 -11.54 -19.05
By element:
Atomic # 1 Polarization: -7.01 SS G_CDS: -5.48 Total: -12.49 kcal
Atomic # 6 Polarization: 1.06 SS G_CDS: -0.82 Total: 0.23 kcal
Atomic # 7 Polarization: 1.25 SS G_CDS: -0.65 Total: 0.60 kcal
Atomic # 8 Polarization: -1.98 SS G_CDS: -0.38 Total: -2.35 kcal
Atomic # 14 Polarization: -0.65 SS G_CDS: -4.97 Total: -5.62 kcal
Atomic # 16 Polarization: -0.14 SS G_CDS: -2.40 Total: -2.55 kcal
Atomic # 35 Polarization: -0.04 SS G_CDS: -2.25 Total: -2.28 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -7.51 -11.54 -19.05 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534458_5000100.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.263 kcal
(2) G-P(sol) polarization free energy of solvation -7.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.046 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds