Wall clock time and date at job start Sun Mar 7 2021 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35992 * 117.00142 * 2 1 4 4 C 1.39154 * 120.07493 * 179.97438 * 3 2 1 5 5 O 1.35999 * 120.07036 * 0.02562 * 4 3 2 6 6 C 1.42899 * 116.99737 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46935 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00110 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00001 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.85347 * 334.67334 * 10 9 7 12 12 C 1.53784 * 113.61164 * 105.86445 * 10 9 7 13 13 C 1.53955 * 87.02159 * 139.95330 * 12 10 9 14 14 H 1.08993 * 113.61456 * 89.19670 * 13 12 10 15 15 C 1.52995 * 113.66949 * 220.07217 * 13 12 10 16 16 S 1.81398 * 109.46987 * 272.55644 * 15 13 12 17 17 C 1.81397 * 103.00239 * 180.02562 * 16 15 13 18 18 C 1.53779 * 113.61659 * 203.47012 * 10 9 7 19 19 C 1.38563 * 119.85432 * 180.02562 * 4 3 2 20 20 C 1.38241 * 120.00134 * 359.97438 * 19 4 3 21 21 C 1.38258 * 120.14553 * 0.03137 * 20 19 4 22 22 C 1.50699 * 119.92693 * 179.97438 * 21 20 19 23 23 O 1.42901 * 109.46830 * 119.99588 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 0.02562 * 22 21 20 25 25 C 1.38240 * 120.14267 * 0.22300 * 21 20 19 26 26 H 1.08998 * 109.46907 * 60.00490 * 1 2 3 27 27 H 1.09007 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47531 * 300.00274 * 1 2 3 29 29 H 1.09000 * 109.46929 * 300.00265 * 6 5 4 30 30 H 1.09005 * 109.47040 * 60.00169 * 6 5 4 31 31 H 0.96999 * 119.99511 * 0.02562 * 9 7 6 32 32 H 1.08999 * 113.61915 * 254.52953 * 12 10 9 33 33 H 1.09006 * 113.61322 * 25.43455 * 12 10 9 34 34 H 1.09001 * 109.47520 * 32.55628 * 15 13 12 35 35 H 1.08996 * 109.47348 * 152.56136 * 15 13 12 36 36 H 1.08999 * 109.47388 * 60.00001 * 17 16 15 37 37 H 1.09001 * 109.47352 * 180.02562 * 17 16 15 38 38 H 1.09003 * 109.46952 * 299.99820 * 17 16 15 39 39 H 1.08996 * 113.61467 * 334.57593 * 18 10 9 40 40 H 1.09003 * 113.61201 * 105.47348 * 18 10 9 41 41 H 1.07997 * 120.00025 * 180.02562 * 19 4 3 42 42 H 1.07994 * 119.92873 * 180.02562 * 20 19 4 43 43 H 1.08991 * 109.47351 * 239.99735 * 22 21 20 44 44 H 0.96708 * 114.00246 * 299.99864 * 23 22 21 45 45 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 46 46 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 47 47 H 1.08000 * 119.99501 * 179.74641 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1476 0.0005 6 6 5.6003 0.3006 0.0005 7 6 6.2518 -1.0583 -0.0001 8 8 5.5669 -2.0592 0.0000 9 7 7.5957 -1.1613 -0.0007 10 6 8.2291 -2.4823 -0.0008 11 1 7.5936 -3.2564 0.4294 12 6 8.8421 -2.8714 -1.3564 13 6 10.0186 -3.4678 -0.5625 14 1 9.8742 -4.5122 -0.2864 15 6 11.3849 -3.2048 -1.1987 16 16 11.7559 -4.5148 -2.3973 17 6 13.3861 -4.0366 -3.0331 18 6 9.6611 -2.4789 0.5597 19 6 4.0603 2.5233 0.0011 20 6 3.3030 3.6798 0.0005 21 6 1.9224 3.6057 0.0001 22 6 1.1016 4.8696 0.0001 23 8 0.2777 4.9024 -1.1670 24 14 2.2365 6.3470 -0.0001 25 6 1.2933 2.3748 0.0049 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 5.9065 0.8504 -0.8894 30 1 5.9065 0.8504 0.8906 31 1 8.1434 -0.3607 -0.0004 32 1 8.2604 -3.6149 -1.9014 33 1 9.1198 -2.0156 -1.9718 34 1 11.3695 -2.2408 -1.7072 35 1 12.1508 -3.1944 -0.4233 36 1 14.1018 -4.0055 -2.2116 37 1 13.7149 -4.7648 -3.7746 38 1 13.3210 -3.0517 -3.4957 39 1 10.1631 -1.5156 0.4692 40 1 9.7396 -2.9060 1.5595 41 1 5.1385 2.5839 0.0011 42 1 3.7908 4.6433 0.0005 43 1 0.4725 4.8943 0.8898 44 1 0.7718 4.8831 -1.9980 45 1 1.4393 7.5999 0.0006 46 1 3.1212 6.3080 1.1920 47 1 0.2147 2.3197 0.0087 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:42 Heat of formation + Delta-G solvation = -80.765514 kcal Electronic energy + Delta-G solvation = -28241.455035 eV Core-core repulsion = 24098.246833 eV Total energy + Delta-G solvation = -4143.208202 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.80229 -41.18448 -39.88733 -38.99377 -38.75044 -36.92409 -34.88264 -32.08184 -31.48847 -30.94596 -29.90096 -29.16586 -28.40183 -26.85981 -26.21836 -24.25533 -23.23144 -22.47252 -21.65738 -20.74379 -19.76710 -18.57895 -18.30187 -17.89986 -17.67564 -17.50418 -17.07923 -16.81560 -16.60457 -16.42837 -16.10426 -15.91021 -15.66591 -15.66532 -15.38882 -15.08412 -14.79512 -14.73088 -14.35535 -14.25796 -13.95445 -13.73798 -13.62453 -13.60783 -13.53551 -13.47094 -12.94660 -12.65024 -12.51155 -12.22085 -12.17737 -12.06354 -12.01180 -11.74211 -11.68813 -11.55183 -10.94548 -10.81987 -10.48092 -10.13163 -9.78584 -8.84736 -8.66921 -5.07708 0.17616 0.29705 0.64873 1.25654 1.46419 1.50748 1.58946 1.59109 1.93503 2.32454 2.54800 2.57465 3.28457 3.40384 3.40861 3.46068 3.60953 3.63012 3.66765 3.76673 3.79855 3.92401 3.93682 4.12537 4.12679 4.13498 4.17093 4.19452 4.26069 4.29932 4.34849 4.40210 4.48196 4.53127 4.56970 4.62849 4.66012 4.69603 4.72337 4.87239 4.97700 4.99773 5.09763 5.14365 5.36762 5.43376 5.55745 5.97146 6.33893 6.53624 6.55456 7.12230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.107 3.893 4 C 0.104 3.896 5 O -0.277 6.277 6 C 0.038 3.962 7 C 0.516 3.484 8 O -0.508 6.508 9 N -0.719 5.719 10 C 0.125 3.875 11 H 0.119 0.881 12 C -0.143 4.143 13 C -0.093 4.093 14 H 0.105 0.895 15 C -0.073 4.073 16 S -0.261 6.261 17 C -0.123 4.123 18 C -0.135 4.135 19 C -0.169 4.169 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.066 4.066 23 O -0.541 6.541 24 Si 0.691 3.309 25 C -0.146 4.146 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.402 0.598 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.380 0.620 45 H -0.255 1.255 46 H -0.258 1.258 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 4.722 -0.982 7.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.061 3.939 4 C 0.058 3.942 5 O -0.189 6.189 6 C -0.041 4.041 7 C 0.301 3.699 8 O -0.381 6.381 9 N -0.372 5.372 10 C 0.020 3.980 11 H 0.136 0.864 12 C -0.182 4.182 13 C -0.113 4.113 14 H 0.123 0.877 15 C -0.221 4.221 16 S -0.035 6.035 17 C -0.292 4.292 18 C -0.175 4.175 19 C -0.188 4.188 20 C -0.132 4.132 21 C -0.116 4.116 22 C -0.177 4.177 23 O -0.346 6.346 24 Si 0.593 3.407 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.237 0.763 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.131 0.869 44 H 0.227 0.773 45 H -0.180 1.180 46 H -0.183 1.183 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.536 3.444 -0.400 5.709 hybrid contribution 0.770 1.308 0.637 1.646 sum 5.306 4.752 0.237 7.127 Atomic orbital electron populations 1.23133 0.78105 1.04418 1.01366 1.86250 1.21344 1.25336 1.88522 1.18284 0.89020 0.85570 1.00986 1.18284 0.88320 0.85779 1.01809 1.86285 1.16048 1.27720 1.88843 1.22494 0.81311 0.96349 1.03936 1.20064 0.82596 0.90533 0.76734 1.90799 1.62608 1.38027 1.46639 1.45799 1.05814 1.09350 1.76226 1.22527 0.92707 0.85392 0.97339 0.86355 1.23588 0.96423 1.01330 0.96861 1.22137 0.92152 1.00435 0.96552 0.87698 1.23380 1.00300 0.99170 0.99281 1.87105 1.24720 1.38791 1.52915 1.23398 0.96181 1.05357 1.04235 1.23422 0.94909 1.00062 0.99085 1.20985 1.00443 0.90689 1.06698 1.20684 0.92781 0.97847 1.01893 1.20041 0.93691 0.95206 1.02671 1.25036 0.99554 1.01851 0.91253 1.86499 1.35752 1.96937 1.15415 0.94695 0.80871 0.76546 0.88574 1.20933 1.00419 0.90400 1.04764 0.92407 0.87855 0.92633 0.88751 0.88839 0.76345 0.90276 0.89396 0.89964 0.89773 0.90456 0.87938 0.90487 0.89205 0.89991 0.84317 0.85074 0.86929 0.77309 1.18001 1.18258 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.81 101.05 0.99 1.00 16 2 O -0.30 -1.36 10.28 -34.22 -0.35 -1.71 16 3 C 0.11 0.37 6.70 -39.12 -0.26 0.10 16 4 C 0.10 0.28 6.70 -39.12 -0.26 0.02 16 5 O -0.28 -1.09 9.45 -47.37 -0.45 -1.54 16 6 C 0.04 -0.03 5.22 36.00 0.19 0.16 16 7 C 0.52 0.83 7.91 -10.98 -0.09 0.74 16 8 O -0.51 -3.55 16.12 -14.35 -0.23 -3.79 16 9 N -0.72 1.37 5.36 -53.02 -0.28 1.08 16 10 C 0.12 -0.15 4.21 -67.12 -0.28 -0.43 16 11 H 0.12 0.11 7.50 -51.93 -0.39 -0.28 16 12 C -0.14 0.17 7.45 -25.83 -0.19 -0.02 16 13 C -0.09 0.18 3.66 -89.72 -0.33 -0.15 16 14 H 0.10 -0.10 8.13 -51.93 -0.42 -0.53 16 15 C -0.07 0.14 5.78 37.16 0.21 0.35 16 16 S -0.26 -0.17 22.37 -107.50 -2.40 -2.58 16 17 C -0.12 0.19 10.76 101.05 1.09 1.28 16 18 C -0.13 0.44 7.39 -25.92 -0.19 0.24 16 19 C -0.17 0.06 9.04 -39.46 -0.36 -0.29 16 20 C -0.11 0.08 8.66 -39.57 -0.34 -0.26 16 21 C -0.12 -0.04 5.39 -104.61 -0.56 -0.60 16 22 C -0.07 0.03 2.82 36.01 0.10 0.13 16 23 O -0.54 -0.02 12.77 -35.23 -0.45 -0.47 16 24 Si 0.69 -1.03 29.78 -169.99 -5.06 -6.10 16 25 C -0.15 -0.23 8.60 -39.46 -0.34 -0.57 16 26 H 0.06 -0.04 7.67 -51.93 -0.40 -0.43 16 27 H 0.10 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 29 H 0.09 -0.34 7.66 -51.93 -0.40 -0.74 16 30 H 0.09 -0.33 7.66 -51.93 -0.40 -0.72 16 31 H 0.40 -2.15 8.71 -40.82 -0.36 -2.50 16 32 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 33 H 0.09 -0.16 7.90 -51.93 -0.41 -0.57 16 34 H 0.08 -0.22 7.85 -51.92 -0.41 -0.62 16 35 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 36 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 37 H 0.10 -0.19 8.14 -51.92 -0.42 -0.61 16 38 H 0.08 -0.17 8.14 -51.92 -0.42 -0.60 16 39 H 0.09 -0.42 8.07 -51.93 -0.42 -0.84 16 40 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 41 H 0.14 -0.50 6.30 -52.49 -0.33 -0.83 16 42 H 0.13 -0.38 4.87 -52.49 -0.26 -0.64 16 43 H 0.11 0.01 7.96 -51.93 -0.41 -0.41 16 44 H 0.38 -1.42 8.70 45.56 0.40 -1.03 16 45 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 46 H -0.26 -0.16 7.11 56.52 0.40 0.24 16 47 H 0.14 0.09 6.30 -52.49 -0.33 -0.24 16 LS Contribution 400.37 15.07 6.03 6.03 Total: 0.00 -11.09 400.37 -10.91 -22.00 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: -7.09 Total: -14.65 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -0.63 Total: 1.70 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -0.28 Total: 1.08 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -1.48 Total: -7.50 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.06 Total: -6.10 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.40 Total: -2.58 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -11.09 -10.91 -22.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.762 kcal (2) G-P(sol) polarization free energy of solvation -11.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds