Wall clock time and date at job start Sun Mar 7 2021 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35992 * 117.00142 * 2 1 4 4 C 1.39154 * 120.07493 * 179.97438 * 3 2 1 5 5 O 1.35999 * 120.07036 * 0.02562 * 4 3 2 6 6 C 1.42899 * 116.99737 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46935 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00110 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99922 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00001 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.85347 * 334.67334 * 10 9 7 12 12 C 1.53784 * 113.61164 * 105.86445 * 10 9 7 13 13 C 1.53955 * 87.02159 * 139.95330 * 12 10 9 14 14 H 1.08993 * 113.61456 * 89.19670 * 13 12 10 15 15 C 1.52995 * 113.66949 * 220.07217 * 13 12 10 16 16 S 1.81398 * 109.46987 * 272.55644 * 15 13 12 17 17 C 1.81397 * 103.00239 * 180.02562 * 16 15 13 18 18 C 1.53779 * 113.61659 * 203.47012 * 10 9 7 19 19 C 1.38563 * 119.85432 * 180.02562 * 4 3 2 20 20 C 1.38241 * 120.00134 * 359.97438 * 19 4 3 21 21 C 1.38258 * 120.14553 * 0.03137 * 20 19 4 22 22 C 1.50699 * 119.92693 * 179.97438 * 21 20 19 23 23 O 1.42901 * 109.46830 * 119.99588 * 22 21 20 24 24 Si 1.86298 * 109.46950 * 0.02562 * 22 21 20 25 25 C 1.38240 * 120.14267 * 0.22300 * 21 20 19 26 26 H 1.08998 * 109.46907 * 60.00490 * 1 2 3 27 27 H 1.09007 * 109.47004 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47531 * 300.00274 * 1 2 3 29 29 H 1.09000 * 109.46929 * 300.00265 * 6 5 4 30 30 H 1.09005 * 109.47040 * 60.00169 * 6 5 4 31 31 H 0.96999 * 119.99511 * 0.02562 * 9 7 6 32 32 H 1.08999 * 113.61915 * 254.52953 * 12 10 9 33 33 H 1.09006 * 113.61322 * 25.43455 * 12 10 9 34 34 H 1.09001 * 109.47520 * 32.55628 * 15 13 12 35 35 H 1.08996 * 109.47348 * 152.56136 * 15 13 12 36 36 H 1.08999 * 109.47388 * 60.00001 * 17 16 15 37 37 H 1.09001 * 109.47352 * 180.02562 * 17 16 15 38 38 H 1.09003 * 109.46952 * 299.99820 * 17 16 15 39 39 H 1.08996 * 113.61467 * 334.57593 * 18 10 9 40 40 H 1.09003 * 113.61201 * 105.47348 * 18 10 9 41 41 H 1.07997 * 120.00025 * 180.02562 * 19 4 3 42 42 H 1.07994 * 119.92873 * 180.02562 * 20 19 4 43 43 H 1.08991 * 109.47351 * 239.99735 * 22 21 20 44 44 H 0.96708 * 114.00246 * 299.99864 * 23 22 21 45 45 H 1.48506 * 109.99834 * 180.02562 * 24 22 21 46 46 H 1.48502 * 110.00011 * 301.31529 * 24 22 21 47 47 H 1.08000 * 119.99501 * 179.74641 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1476 0.0005 6 6 5.6003 0.3006 0.0005 7 6 6.2518 -1.0583 -0.0001 8 8 5.5669 -2.0592 0.0000 9 7 7.5957 -1.1613 -0.0007 10 6 8.2291 -2.4823 -0.0008 11 1 7.5936 -3.2564 0.4294 12 6 8.8421 -2.8714 -1.3564 13 6 10.0186 -3.4678 -0.5625 14 1 9.8742 -4.5122 -0.2864 15 6 11.3849 -3.2048 -1.1987 16 16 11.7559 -4.5148 -2.3973 17 6 13.3861 -4.0366 -3.0331 18 6 9.6611 -2.4789 0.5597 19 6 4.0603 2.5233 0.0011 20 6 3.3030 3.6798 0.0005 21 6 1.9224 3.6057 0.0001 22 6 1.1016 4.8696 0.0001 23 8 0.2777 4.9024 -1.1670 24 14 2.2365 6.3470 -0.0001 25 6 1.2933 2.3748 0.0049 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 5.9065 0.8504 -0.8894 30 1 5.9065 0.8504 0.8906 31 1 8.1434 -0.3607 -0.0004 32 1 8.2604 -3.6149 -1.9014 33 1 9.1198 -2.0156 -1.9718 34 1 11.3695 -2.2408 -1.7072 35 1 12.1508 -3.1944 -0.4233 36 1 14.1018 -4.0055 -2.2116 37 1 13.7149 -4.7648 -3.7746 38 1 13.3210 -3.0517 -3.4957 39 1 10.1631 -1.5156 0.4692 40 1 9.7396 -2.9060 1.5595 41 1 5.1385 2.5839 0.0011 42 1 3.7908 4.6433 0.0005 43 1 0.4725 4.8943 0.8898 44 1 0.7718 4.8831 -1.9980 45 1 1.4393 7.5999 0.0006 46 1 3.1212 6.3080 1.1920 47 1 0.2147 2.3197 0.0087 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_60476.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:41 Heat of formation + Delta-G solvation = -82.155492 kcal Electronic energy + Delta-G solvation = -28241.515309 eV Core-core repulsion = 24098.246833 eV Total energy + Delta-G solvation = -4143.268476 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.138 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.83600 -41.19170 -39.89820 -39.08198 -38.78680 -36.91820 -34.92917 -32.07669 -31.48348 -30.87528 -29.78397 -29.08584 -28.43716 -26.71479 -26.20073 -24.20582 -23.21822 -22.48183 -21.68412 -20.63231 -19.79014 -18.58169 -18.33320 -17.89938 -17.67076 -17.50509 -17.12458 -16.78947 -16.67875 -16.36561 -16.09081 -15.88478 -15.67573 -15.62340 -15.39009 -15.08205 -14.73952 -14.66111 -14.32820 -14.20541 -13.82060 -13.76730 -13.58428 -13.49035 -13.42818 -13.38134 -12.89899 -12.65072 -12.54499 -12.17407 -12.12177 -12.06116 -12.00639 -11.73151 -11.57620 -11.47866 -10.94461 -10.86817 -10.43586 -10.12045 -9.79028 -8.91349 -8.69763 -4.96294 0.16676 0.27689 0.74784 1.34225 1.44794 1.51317 1.67349 1.70194 2.00482 2.30469 2.56363 2.59792 3.41829 3.48945 3.53460 3.56210 3.69303 3.74079 3.78743 3.86931 3.91452 4.04933 4.13090 4.13931 4.24926 4.28572 4.29354 4.31775 4.33272 4.35616 4.36196 4.49810 4.55163 4.63902 4.65169 4.73345 4.77069 4.82752 4.88330 4.99968 5.00467 5.05764 5.12248 5.22017 5.36964 5.53427 5.59913 5.97000 6.42897 6.55110 6.77710 7.16184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.084 3.916 5 O -0.316 6.316 6 C 0.034 3.966 7 C 0.511 3.489 8 O -0.576 6.576 9 N -0.697 5.697 10 C 0.117 3.883 11 H 0.088 0.912 12 C -0.141 4.141 13 C -0.092 4.092 14 H 0.088 0.912 15 C -0.055 4.055 16 S -0.333 6.333 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.158 4.158 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.077 4.077 23 O -0.558 6.558 24 Si 0.789 3.211 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.423 0.577 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.104 0.896 44 H 0.395 0.605 45 H -0.304 1.304 46 H -0.278 1.278 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.302 7.484 -0.899 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.031 3.969 4 C 0.039 3.961 5 O -0.229 6.229 6 C -0.043 4.043 7 C 0.297 3.703 8 O -0.454 6.454 9 N -0.350 5.350 10 C 0.012 3.988 11 H 0.106 0.894 12 C -0.180 4.180 13 C -0.112 4.112 14 H 0.107 0.893 15 C -0.203 4.203 16 S -0.108 6.108 17 C -0.278 4.278 18 C -0.153 4.153 19 C -0.177 4.177 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.186 4.186 23 O -0.366 6.366 24 Si 0.694 3.306 25 C -0.172 4.172 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.262 0.738 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.121 0.879 44 H 0.245 0.755 45 H -0.232 1.232 46 H -0.204 1.204 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.026 6.216 -0.336 9.387 hybrid contribution -0.011 0.474 0.605 0.769 sum 7.015 6.690 0.269 9.698 Atomic orbital electron populations 1.23275 0.76847 1.05175 1.02067 1.86189 1.22970 1.26703 1.89102 1.18683 0.89965 0.85576 1.02715 1.18602 0.88177 0.86588 1.02773 1.86229 1.18313 1.29081 1.89299 1.22801 0.79289 0.95132 1.07103 1.20662 0.83273 0.90846 0.75505 1.90774 1.64229 1.40332 1.50095 1.45638 1.04983 1.10001 1.74418 1.22452 0.93472 0.85194 0.97714 0.89385 1.23573 0.96488 1.01193 0.96732 1.22069 0.92053 1.00029 0.97042 0.89321 1.23370 1.00135 0.98262 0.98533 1.87383 1.27275 1.41463 1.54654 1.23392 0.94208 1.05758 1.04445 1.23353 0.92671 1.00823 0.98478 1.21388 1.02312 0.89252 1.04713 1.21017 0.92263 0.99035 1.00444 1.20208 0.94524 0.94792 1.02440 1.25284 0.99830 1.02540 0.90987 1.86463 1.36801 1.96944 1.16384 0.93619 0.78267 0.72325 0.86392 1.20998 1.00474 0.90598 1.05087 0.91648 0.87117 0.91943 0.85229 0.85468 0.73808 0.92912 0.88007 0.88425 0.88595 0.89516 0.87972 0.89437 0.86409 0.89677 0.80546 0.82324 0.87903 0.75461 1.23200 1.20444 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.18 16 2 O -0.34 -3.93 10.28 -79.59 -0.82 -4.75 16 3 C 0.08 0.64 6.70 22.57 0.15 0.79 16 4 C 0.08 0.47 6.70 22.57 0.15 0.62 16 5 O -0.32 -2.76 9.45 -67.13 -0.63 -3.40 16 6 C 0.03 -0.09 5.22 71.24 0.37 0.28 16 7 C 0.51 1.89 7.91 87.66 0.69 2.58 16 8 O -0.58 -9.72 16.12 16.02 0.26 -9.46 16 9 N -0.70 3.21 5.36 -440.04 -2.36 0.85 16 10 C 0.12 -0.22 4.21 45.52 0.19 -0.02 16 11 H 0.09 0.42 7.50 -2.39 -0.02 0.40 16 12 C -0.14 0.25 7.45 31.18 0.23 0.48 16 13 C -0.09 0.35 3.66 -10.21 -0.04 0.32 16 14 H 0.09 -0.03 8.13 -2.39 -0.02 -0.05 16 15 C -0.06 0.27 5.78 71.98 0.42 0.68 16 16 S -0.33 -0.61 22.37 -56.49 -1.26 -1.88 16 17 C -0.11 0.41 10.76 113.37 1.22 1.63 16 18 C -0.11 0.89 7.39 31.12 0.23 1.12 16 19 C -0.16 0.46 9.04 22.35 0.20 0.66 16 20 C -0.11 0.39 8.66 22.28 0.19 0.58 16 21 C -0.12 -0.02 5.39 -19.86 -0.11 -0.12 16 22 C -0.08 0.09 2.82 71.24 0.20 0.29 16 23 O -0.56 0.08 12.77 -148.98 -1.90 -1.83 16 24 Si 0.79 -3.46 29.78 68.60 2.04 -1.42 16 25 C -0.15 -0.63 8.60 22.35 0.19 -0.44 16 26 H 0.06 0.05 7.67 -2.39 -0.02 0.03 16 27 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 28 H 0.06 0.06 7.65 -2.39 -0.02 0.04 16 29 H 0.13 -1.32 7.66 -2.39 -0.02 -1.34 16 30 H 0.13 -1.25 7.66 -2.38 -0.02 -1.27 16 31 H 0.42 -5.68 8.71 -92.71 -0.81 -6.49 16 32 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.10 -0.47 7.90 -2.38 -0.02 -0.49 16 34 H 0.10 -0.74 7.85 -2.39 -0.02 -0.76 16 35 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.12 -1.53 8.07 -2.39 -0.02 -1.55 16 40 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H 0.18 -2.02 6.30 -2.91 -0.02 -2.04 16 42 H 0.16 -1.50 4.87 -2.91 -0.01 -1.51 16 43 H 0.10 0.04 7.96 -2.39 -0.02 0.02 16 44 H 0.40 -3.24 8.70 -74.05 -0.64 -3.89 16 45 H -0.30 -1.15 7.11 99.48 0.71 -0.45 16 46 H -0.28 0.24 7.11 99.48 0.71 0.95 16 47 H 0.14 0.42 6.30 -2.91 -0.02 0.40 16 Total: 0.00 -32.13 400.37 0.32 -31.81 By element: Atomic # 1 Polarization: -20.14 SS G_CDS: -0.41 Total: -20.55 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.41 Total: 10.63 kcal Atomic # 7 Polarization: 3.21 SS G_CDS: -2.36 Total: 0.85 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -3.10 Total: -19.44 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: 2.04 Total: -1.42 kcal Atomic # 16 Polarization: -0.61 SS G_CDS: -1.26 Total: -1.88 kcal Total: -32.13 0.32 -31.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_60476.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.350 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds