Wall clock time and date at job start Sun Mar 7 2021 05:31:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81400 * 1
3 3 C 1.81400 * 102.99864 * 2 1
4 4 C 1.52994 * 109.47478 * 179.97438 * 3 2 1
5 5 H 1.09001 * 112.84928 * 43.80230 * 4 3 2
6 6 C 1.53778 * 113.61813 * 174.99943 * 4 3 2
7 7 C 1.53778 * 87.08065 * 139.98172 * 6 4 3
8 8 H 1.09003 * 113.61508 * 89.20342 * 7 6 4
9 9 N 1.46506 * 113.61357 * 220.01679 * 7 6 4
10 10 C 1.34773 * 119.99968 * 203.46865 * 9 7 6
11 11 O 1.21283 * 120.00360 * 359.73034 * 10 9 7
12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7
13 13 O 1.42894 * 109.47263 * 179.72605 * 12 10 9
14 14 C 1.35919 * 117.00174 * 179.97438 * 13 12 10
15 15 C 1.38789 * 120.06204 * 180.02562 * 14 13 12
16 16 Br 1.89098 * 120.03343 * 359.97438 * 15 14 13
17 17 C 1.38237 * 119.92602 * 180.02562 * 15 14 13
18 18 C 1.38238 * 120.04787 * 0.02562 * 17 15 14
19 19 C 1.50704 * 119.94096 * 179.97438 * 18 17 15
20 20 O 1.42902 * 109.46972 * 65.00276 * 19 18 17
21 21 Si 1.86302 * 109.47161 * 185.00036 * 19 18 17
22 22 C 1.38280 * 120.12013 * 359.96212 * 18 17 15
23 23 C 1.38153 * 120.06967 * 359.76202 * 22 18 17
24 24 C 1.53770 * 87.17681 * 334.60996 * 7 6 4
25 25 H 1.08997 * 109.46842 * 179.97438 * 1 2 3
26 26 H 1.08997 * 109.47621 * 300.00139 * 1 2 3
27 27 H 1.09000 * 109.47056 * 60.00286 * 1 2 3
28 28 H 1.09000 * 109.47233 * 59.99762 * 3 2 1
29 29 H 1.09003 * 109.47189 * 300.00171 * 3 2 1
30 30 H 1.09003 * 113.61449 * 25.43406 * 6 4 3
31 31 H 1.09005 * 113.69035 * 254.54050 * 6 4 3
32 32 H 0.96998 * 119.99507 * 23.47720 * 9 7 6
33 33 H 1.09001 * 109.46564 * 299.73030 * 12 10 9
34 34 H 1.08998 * 109.47012 * 59.72084 * 12 10 9
35 35 H 1.07997 * 119.97191 * 179.97438 * 17 15 14
36 36 H 1.09000 * 109.47454 * 305.00436 * 19 18 17
37 37 H 0.96700 * 113.99731 * 59.99551 * 20 19 18
38 38 H 1.48502 * 110.00025 * 180.02562 * 21 19 18
39 39 H 1.48502 * 109.99883 * 301.32385 * 21 19 18
40 40 H 1.08004 * 119.96775 * 180.02562 * 22 18 17
41 41 H 1.08003 * 120.02264 * 180.28049 * 23 22 18
42 42 H 1.09001 * 113.62107 * 139.94096 * 24 7 6
43 43 H 1.08998 * 113.61565 * 270.84488 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2220 1.7675 0.0000
4 6 3.7422 1.9401 0.0006
5 1 4.2448 1.2674 -0.6943
6 6 4.1961 3.4042 -0.1221
7 6 5.2865 3.0704 0.9095
8 1 6.2129 2.7079 0.4639
9 7 5.5066 4.1318 1.8951
10 6 6.6868 4.2181 2.5403
11 8 7.5648 3.4142 2.3086
12 6 6.9130 5.3096 3.5545
13 8 8.2276 5.1871 4.1010
14 6 8.5944 6.1015 5.0373
15 6 9.8574 6.0421 5.6097
16 35 11.0701 4.6882 5.0884
17 6 10.2273 6.9733 6.5622
18 6 9.3403 7.9622 6.9446
19 6 9.7459 8.9757 7.9835
20 8 10.8167 9.7748 7.4768
21 14 8.2918 10.0688 8.3857
22 6 8.0816 8.0233 6.3753
23 6 7.7088 7.0987 5.4189
24 6 4.3628 1.9473 1.4096
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 -0.3633 0.5138 -0.8900
28 1 1.8031 2.2371 0.8900
29 1 1.8030 2.2371 -0.8900
30 1 3.4589 4.1216 0.2384
31 1 4.5895 3.6598 -1.1061
32 1 4.8029 4.7723 2.0833
33 1 6.8092 6.2813 3.0717
34 1 6.1774 5.2208 4.3540
35 1 11.2097 6.9275 7.0084
36 1 10.0732 8.4597 8.8862
37 1 10.5960 10.2636 6.6721
38 1 8.6790 11.0731 9.4087
39 1 7.8160 10.7535 7.1568
40 1 7.3906 8.7972 6.6756
41 1 6.7271 7.1498 4.9715
42 1 4.8904 1.0270 1.6601
43 1 3.6712 2.2656 2.1896
There are 60 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 60
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16534458_6201210.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:31:45
Heat of formation + Delta-G solvation = -42.593146 kcal
Electronic energy + Delta-G solvation = -25932.206405 eV
Core-core repulsion = 21925.055289 eV
Total energy + Delta-G solvation = -4007.151116 eV
No. of doubly occupied orbitals = 60
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 402.033 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.77317 -41.11017 -39.80027 -38.91668 -37.35611 -34.94688 -33.60271 -32.04797
-31.15329 -30.39132 -29.91432 -29.25188 -26.89465 -26.45197 -24.52512 -23.50085
-22.43139 -21.73422 -20.79040 -19.68056 -18.61814 -18.22221 -17.75050 -17.59596
-17.17924 -16.92358 -16.48362 -16.41686 -16.16882 -15.80706 -15.78037 -15.26606
-15.19981 -14.85183 -14.79644 -14.46102 -14.39392 -14.01934 -13.91284 -13.83439
-13.64654 -13.62977 -13.50631 -13.00349 -12.45376 -12.31025 -12.27539 -12.24335
-11.81880 -11.75866 -11.72250 -11.58610 -11.07223 -10.96753 -10.89858 -10.65762
-10.18869 -9.98446 -9.35076 -8.68725 -5.06089 -0.10202 0.05702 0.62922
0.72058 1.19876 1.31808 1.42816 1.48175 1.57027 1.88409 2.32227
2.40752 3.23927 3.28194 3.34652 3.37733 3.49916 3.56532 3.58498
3.61173 3.66173 3.78263 3.80393 4.01348 4.10175 4.11643 4.14382
4.17491 4.27086 4.37647 4.46394 4.49655 4.55292 4.59524 4.65854
4.70888 4.76015 4.83556 4.89982 4.94516 5.09920 5.15577 5.36294
5.41606 5.95780 6.28335 6.33206 7.04469
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 S -0.261 6.261
3 C -0.073 4.073
4 C -0.093 4.093
5 H 0.105 0.895
6 C -0.135 4.135
7 C 0.125 3.875
8 H 0.119 0.881
9 N -0.718 5.718
10 C 0.516 3.484
11 O -0.505 6.505
12 C 0.036 3.964
13 O -0.273 6.273
14 C 0.161 3.839
15 C -0.123 4.123
16 Br -0.024 7.024
17 C -0.023 4.023
18 C -0.150 4.150
19 C -0.071 4.071
20 O -0.528 6.528
21 Si 0.686 3.314
22 C -0.062 4.062
23 C -0.201 4.201
24 C -0.143 4.143
25 H 0.102 0.898
26 H 0.076 0.924
27 H 0.076 0.924
28 H 0.082 0.918
29 H 0.084 0.916
30 H 0.089 0.911
31 H 0.082 0.918
32 H 0.402 0.598
33 H 0.097 0.903
34 H 0.098 0.902
35 H 0.144 0.856
36 H 0.121 0.879
37 H 0.376 0.624
38 H -0.255 1.255
39 H -0.260 1.260
40 H 0.137 0.863
41 H 0.141 0.859
42 H 0.079 0.921
43 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.761 3.896 0.104 9.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 S -0.035 6.035
3 C -0.222 4.222
4 C -0.113 4.113
5 H 0.123 0.877
6 C -0.175 4.175
7 C 0.021 3.979
8 H 0.137 0.863
9 N -0.371 5.371
10 C 0.300 3.700
11 O -0.378 6.378
12 C -0.042 4.042
13 O -0.185 6.185
14 C 0.113 3.887
15 C -0.203 4.203
16 Br 0.061 6.939
17 C -0.043 4.043
18 C -0.152 4.152
19 C -0.180 4.180
20 O -0.334 6.334
21 Si 0.587 3.413
22 C -0.080 4.080
23 C -0.220 4.220
24 C -0.182 4.182
25 H 0.121 0.879
26 H 0.095 0.905
27 H 0.095 0.905
28 H 0.100 0.900
29 H 0.102 0.898
30 H 0.108 0.892
31 H 0.100 0.900
32 H 0.237 0.763
33 H 0.115 0.885
34 H 0.116 0.884
35 H 0.162 0.838
36 H 0.138 0.862
37 H 0.224 0.776
38 H -0.180 1.180
39 H -0.185 1.185
40 H 0.154 0.846
41 H 0.158 0.842
42 H 0.098 0.902
43 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -6.876 2.304 0.181 7.254
hybrid contribution -1.123 2.132 -0.719 2.514
sum -7.999 4.435 -0.538 9.162
Atomic orbital electron populations
1.23399 0.94084 1.06784 1.04903 1.87109 1.07421 1.10934 1.98034
1.23379 0.99026 0.94805 1.04942 1.22135 0.92736 0.97407 0.98981
0.87681 1.23422 0.97674 0.96373 1.00016 1.22539 0.98649 0.87718
0.89032 0.86314 1.45792 1.15565 1.33277 1.42473 1.19991 0.82647
0.85572 0.81767 1.90815 1.42612 1.41011 1.63349 1.22569 0.85005
0.99406 0.97254 1.86293 1.31124 1.49010 1.52045 1.18649 0.92472
0.88750 0.88862 1.21165 0.93899 1.00877 1.04384 1.96817 1.57410
1.48447 1.91202 1.20890 0.99770 0.90734 0.92918 1.20199 0.94698
0.98989 1.01291 1.24993 0.99832 0.95678 0.97539 1.86626 1.37253
1.62742 1.46804 0.95070 0.81594 0.82474 0.82125 1.20979 0.95327
0.97546 0.94140 1.21162 1.00574 0.97409 1.02878 1.23584 0.98535
0.99677 0.96393 0.87927 0.90480 0.90455 0.89974 0.89765 0.89213
0.89971 0.76337 0.88546 0.88412 0.83825 0.86166 0.77602 1.18012
1.18466 0.84596 0.84179 0.90246 0.89395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 0.21 10.76 101.05 1.09 1.30 16
2 S -0.26 -0.12 22.37 -107.50 -2.40 -2.52 16
3 C -0.07 0.16 5.78 37.15 0.21 0.37 16
4 C -0.09 0.21 3.66 -89.72 -0.33 -0.12 16
5 H 0.11 -0.14 8.13 -51.93 -0.42 -0.56 16
6 C -0.13 0.49 7.39 -25.92 -0.19 0.30 16
7 C 0.13 -0.21 4.21 -67.12 -0.28 -0.50 16
8 H 0.12 0.05 7.50 -51.93 -0.39 -0.34 16
9 N -0.72 1.88 5.36 -53.02 -0.28 1.60 16
10 C 0.52 0.31 7.91 -10.98 -0.09 0.23 16
11 O -0.50 -2.98 16.12 -14.36 -0.23 -3.21 16
12 C 0.04 -0.07 5.22 36.01 0.19 0.12 16
13 O -0.27 -0.61 9.00 -39.40 -0.35 -0.97 16
14 C 0.16 0.20 6.68 -39.20 -0.26 -0.06 16
15 C -0.12 -0.28 6.24 -39.38 -0.25 -0.52 16
16 Br -0.02 -0.09 33.16 -68.01 -2.26 -2.35 16
17 C -0.02 -0.02 9.42 -39.58 -0.37 -0.39 16
18 C -0.15 0.10 5.35 -104.60 -0.56 -0.46 16
19 C -0.07 0.08 2.80 36.01 0.10 0.18 16
20 O -0.53 -0.29 12.83 -35.23 -0.45 -0.74 16
21 Si 0.69 -1.47 29.88 -169.99 -5.08 -6.55 16
22 C -0.06 0.11 8.66 -39.60 -0.34 -0.23 16
23 C -0.20 0.31 9.04 -39.43 -0.36 -0.04 16
24 C -0.14 0.23 7.45 -25.83 -0.19 0.04 16
25 H 0.10 -0.20 8.14 -51.93 -0.42 -0.63 16
26 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16
27 H 0.08 -0.18 8.14 -51.92 -0.42 -0.61 16
28 H 0.08 -0.24 7.85 -51.92 -0.41 -0.64 16
29 H 0.08 -0.22 8.14 -51.92 -0.42 -0.65 16
30 H 0.09 -0.45 8.07 -51.93 -0.42 -0.87 16
31 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16
32 H 0.40 -2.41 8.71 -40.82 -0.36 -2.77 16
33 H 0.10 -0.45 7.65 -51.93 -0.40 -0.85 16
34 H 0.10 -0.47 7.67 -51.93 -0.40 -0.86 16
35 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16
36 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16
37 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16
38 H -0.26 -0.37 7.11 56.52 0.40 0.03 16
39 H -0.26 0.15 7.01 56.52 0.40 0.55 16
40 H 0.14 -0.53 4.83 -52.48 -0.25 -0.79 16
41 H 0.14 -0.66 6.30 -52.48 -0.33 -0.99 16
42 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16
43 H 0.09 -0.20 7.90 -51.93 -0.41 -0.61 16
LS Contribution 391.58 15.07 5.90 5.90
Total: 0.00 -9.64 391.58 -12.75 -22.40
By element:
Atomic # 1 Polarization: -7.80 SS G_CDS: -5.96 Total: -13.76 kcal
Atomic # 6 Polarization: 1.84 SS G_CDS: -1.63 Total: 0.21 kcal
Atomic # 7 Polarization: 1.88 SS G_CDS: -0.28 Total: 1.60 kcal
Atomic # 8 Polarization: -3.88 SS G_CDS: -1.04 Total: -4.92 kcal
Atomic # 14 Polarization: -1.47 SS G_CDS: -5.08 Total: -6.55 kcal
Atomic # 16 Polarization: -0.12 SS G_CDS: -2.40 Total: -2.52 kcal
Atomic # 35 Polarization: -0.09 SS G_CDS: -2.26 Total: -2.35 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -9.64 -12.75 -22.40 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534458_6201210.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.196 kcal
(2) G-P(sol) polarization free energy of solvation -9.643 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.397 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds