Wall clock time and date at job start Sun Mar 7 2021 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81398 * 102.99836 * 2 1 4 4 C 1.52999 * 109.47111 * 179.97438 * 3 2 1 5 5 H 1.08993 * 112.90825 * 316.25004 * 4 3 2 6 6 C 1.53962 * 113.66529 * 87.55251 * 4 3 2 7 7 C 1.53782 * 87.11063 * 139.88900 * 6 4 3 8 8 H 1.08997 * 113.61225 * 89.18406 * 7 6 4 9 9 N 1.46506 * 113.68817 * 220.07794 * 7 6 4 10 10 C 1.34776 * 119.99831 * 252.53351 * 9 7 6 11 11 O 1.21281 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00109 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47405 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99833 * 66.05048 * 13 12 10 15 15 C 1.39675 * 111.00158 * 190.00168 * 13 12 10 16 16 C 1.38888 * 120.07586 * 120.00215 * 15 13 12 17 17 C 1.50704 * 120.03418 * 359.97438 * 16 15 13 18 18 O 1.42903 * 109.47057 * 75.00387 * 17 16 15 19 19 Si 1.86303 * 109.46915 * 194.99778 * 17 16 15 20 20 C 1.38125 * 119.92680 * 179.97438 * 16 15 13 21 21 C 1.38261 * 120.07264 * 0.02728 * 20 16 15 22 22 C 1.50702 * 119.92148 * 179.97438 * 21 20 16 23 23 F 1.39900 * 109.47314 * 89.99851 * 22 21 20 24 24 F 1.39905 * 109.46950 * 209.99461 * 22 21 20 25 25 F 1.39894 * 109.47275 * 329.99573 * 22 21 20 26 26 C 1.38302 * 120.15230 * 359.97183 * 21 20 16 27 27 C 1.38084 * 120.07534 * 359.74427 * 26 21 20 28 28 C 1.53781 * 87.08260 * 334.63747 * 7 6 4 29 29 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46896 * 299.99729 * 1 2 3 31 31 H 1.08997 * 109.47113 * 60.00262 * 1 2 3 32 32 H 1.09002 * 109.47536 * 59.99739 * 3 2 1 33 33 H 1.09004 * 109.47051 * 299.99849 * 3 2 1 34 34 H 1.08997 * 113.53543 * 25.33574 * 6 4 3 35 35 H 1.08994 * 113.66446 * 254.45777 * 6 4 3 36 36 H 0.96990 * 119.99883 * 72.53908 * 9 7 6 37 37 H 1.09001 * 109.47227 * 300.00402 * 12 10 9 38 38 H 1.09005 * 109.47040 * 60.00185 * 12 10 9 39 39 H 1.08997 * 109.47197 * 59.99869 * 14 13 12 40 40 H 1.08994 * 109.47427 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.46769 * 300.00348 * 14 13 12 42 42 H 1.08995 * 109.47577 * 315.00378 * 17 16 15 43 43 H 0.96698 * 113.99926 * 299.99800 * 18 17 16 44 44 H 1.48499 * 110.00190 * 298.68610 * 19 17 16 45 45 H 1.48500 * 109.99852 * 60.00595 * 19 17 16 46 46 H 1.08002 * 119.96190 * 179.97438 * 20 16 15 47 47 H 1.08000 * 119.96268 * 180.02562 * 26 21 20 48 48 H 1.08007 * 120.04122 * 180.26954 * 27 26 21 49 49 H 1.09002 * 113.61445 * 139.98212 * 28 7 6 50 50 H 1.09002 * 113.61408 * 270.79943 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 1 4.2453 1.2673 0.6952 6 6 4.3637 1.9497 -1.4079 7 6 5.2875 3.0728 -0.9079 8 1 6.2138 2.7103 -0.4622 9 7 5.5074 4.1359 -1.8918 10 6 6.6985 4.2429 -2.5134 11 8 7.5881 3.4589 -2.2586 12 6 6.9246 5.3359 -3.5258 13 7 8.2912 5.2377 -4.0555 14 6 8.4680 4.0020 -4.8301 15 6 8.6125 6.3597 -4.8229 16 6 9.6823 7.1678 -4.4604 17 6 10.4982 6.8355 -3.2377 18 8 11.3512 5.7247 -3.5216 19 14 11.5349 8.3091 -2.7636 20 6 9.9976 8.2763 -5.2218 21 6 9.2491 8.5821 -6.3433 22 6 9.5958 9.7927 -7.1713 23 9 10.5098 9.4308 -8.1666 24 9 8.4350 10.2989 -7.7659 25 9 10.1642 10.7722 -6.3499 26 6 8.1832 7.7796 -6.7072 27 6 7.8661 6.6666 -5.9539 28 6 4.1960 3.4042 0.1235 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8031 2.2372 0.8900 33 1 1.8031 2.2371 -0.8900 34 1 3.6712 2.2682 -2.1870 35 1 4.8915 1.0298 -1.6596 36 1 4.7959 4.7626 -2.0957 37 1 6.2103 5.2285 -4.3420 38 1 6.7883 6.3066 -3.0490 39 1 7.7679 3.9935 -5.6654 40 1 9.4884 3.9543 -5.2103 41 1 8.2789 3.1411 -4.1888 42 1 9.8314 6.5803 -2.4142 43 1 10.8782 4.9206 -3.7762 44 1 12.4707 8.6475 -3.8659 45 1 10.6595 9.4711 -2.4658 46 1 10.8291 8.9053 -4.9402 47 1 7.6009 8.0211 -7.5841 48 1 7.0362 6.0378 -6.2410 49 1 4.5885 3.6586 1.1081 50 1 3.4585 4.1216 -0.2365 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_6406254.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:47 Heat of formation + Delta-G solvation = -141.869826 kcal Electronic energy + Delta-G solvation = -36362.717798 eV Core-core repulsion = 31069.361222 eV Total energy + Delta-G solvation = -5293.356576 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.137 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -51.38132 -48.90644 -48.84335 -41.87720 -41.02087 -39.58431 -37.67881 -37.56465 -34.79367 -33.11608 -32.25800 -30.86825 -29.77767 -29.04802 -27.71652 -26.99780 -26.68645 -25.31554 -24.01183 -23.14432 -22.08494 -21.52685 -20.53993 -19.73217 -19.68013 -19.57489 -18.52585 -18.17839 -17.85478 -17.47282 -17.02095 -16.92189 -16.52513 -16.29902 -16.28394 -15.86750 -15.75102 -15.73248 -15.49515 -15.29989 -15.27461 -15.10212 -15.02201 -14.99996 -14.83218 -14.72616 -14.63665 -14.30079 -14.07246 -13.97492 -13.79505 -13.71014 -13.41765 -13.36346 -13.34531 -13.15619 -12.93008 -12.78454 -12.58465 -12.30644 -12.08572 -11.53807 -11.45433 -11.44200 -11.08043 -10.88528 -10.83698 -10.36686 -10.19988 -10.01213 -9.69366 -8.70500 -4.89296 -0.49470 -0.12474 0.73941 1.30582 1.42215 1.56515 1.60877 1.68725 1.86970 1.92707 2.06346 2.47761 2.67957 2.77817 3.17905 3.40549 3.45003 3.46166 3.57771 3.64355 3.75991 3.80377 3.82677 3.95199 3.96974 4.02797 4.14280 4.24582 4.27298 4.30385 4.33310 4.33984 4.34507 4.41103 4.46277 4.54033 4.55373 4.74252 4.79230 4.80848 4.84040 4.84727 4.87021 4.96349 5.02378 5.06434 5.07952 5.26405 5.29792 5.53452 5.62060 6.01617 6.57730 6.59867 7.28650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.329 6.329 3 C -0.056 4.056 4 C -0.093 4.093 5 H 0.090 0.910 6 C -0.139 4.139 7 C 0.123 3.877 8 H 0.093 0.907 9 N -0.708 5.708 10 C 0.515 3.485 11 O -0.560 6.560 12 C 0.038 3.962 13 N -0.502 5.502 14 C 0.022 3.978 15 C 0.136 3.864 16 C -0.098 4.098 17 C -0.071 4.071 18 O -0.545 6.545 19 Si 0.788 3.212 20 C -0.084 4.084 21 C -0.187 4.187 22 C 0.507 3.493 23 F -0.181 7.181 24 F -0.172 7.172 25 F -0.185 7.185 26 C -0.052 4.052 27 C -0.134 4.134 28 C -0.119 4.119 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.372 0.628 44 H -0.289 1.289 45 H -0.260 1.260 46 H 0.126 0.874 47 H 0.161 0.839 48 H 0.166 0.834 49 H 0.082 0.918 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 0.499 1.957 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.104 6.104 3 C -0.204 4.204 4 C -0.113 4.113 5 H 0.108 0.892 6 C -0.177 4.177 7 C 0.017 3.983 8 H 0.111 0.889 9 N -0.360 5.360 10 C 0.301 3.699 11 O -0.437 6.437 12 C -0.091 4.091 13 N -0.224 5.224 14 C -0.124 4.124 15 C 0.042 3.958 16 C -0.100 4.100 17 C -0.180 4.180 18 O -0.351 6.351 19 Si 0.690 3.310 20 C -0.102 4.102 21 C -0.189 4.189 22 C 0.453 3.547 23 F -0.162 7.162 24 F -0.153 7.153 25 F -0.166 7.166 26 C -0.071 4.071 27 C -0.154 4.154 28 C -0.159 4.159 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.254 0.746 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.221 0.779 44 H -0.217 1.217 45 H -0.186 1.186 46 H 0.143 0.857 47 H 0.178 0.822 48 H 0.184 0.816 49 H 0.101 0.899 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.715 0.280 2.488 7.167 hybrid contribution -2.468 0.656 -1.923 3.196 sum -9.183 0.936 0.566 9.248 Atomic orbital electron populations 1.23395 0.91623 1.07126 1.05776 1.87336 1.10356 1.14473 1.98197 1.23375 0.98915 0.92193 1.05938 1.22078 0.92607 0.98239 0.98337 0.89220 1.23535 0.98581 0.98716 0.96916 1.22347 0.97839 0.88200 0.89876 0.88850 1.45824 1.14761 1.33342 1.42089 1.20718 0.82046 0.85267 0.81848 1.90712 1.43811 1.44546 1.64653 1.22176 0.89334 0.99446 0.98142 1.59161 1.25729 1.00884 1.36622 1.22653 1.02344 0.90772 0.96589 1.18824 0.93510 0.91656 0.91827 1.20324 0.97135 0.94436 0.98089 1.25205 0.98730 0.99029 0.95036 1.86675 1.35401 1.21957 1.91099 0.92384 0.80373 0.71644 0.86599 1.20788 0.98523 0.97100 0.93781 1.19977 1.02283 0.97808 0.98786 1.18395 0.74537 0.83494 0.78265 1.93235 1.67951 1.91662 1.63355 1.93206 1.48705 1.88613 1.84822 1.93188 1.85521 1.65458 1.72447 1.21130 0.93654 0.92590 0.99681 1.21966 1.01365 0.97509 0.94531 1.23357 0.97225 0.95607 0.99692 0.87920 0.89590 0.89529 0.88871 0.88701 0.88522 0.92603 0.74599 0.88155 0.85972 0.93355 0.91028 0.89737 0.89152 0.77855 1.21651 1.18556 0.85686 0.82190 0.81622 0.89932 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.46 10.76 113.37 1.22 1.68 16 2 S -0.33 -0.33 22.37 -56.49 -1.26 -1.59 16 3 C -0.06 0.30 5.78 71.98 0.42 0.72 16 4 C -0.09 0.47 3.67 -10.20 -0.04 0.43 16 5 H 0.09 -0.16 8.13 -2.39 -0.02 -0.18 16 6 C -0.14 0.57 7.44 31.18 0.23 0.80 16 7 C 0.12 -0.56 4.24 45.52 0.19 -0.37 16 8 H 0.09 0.10 7.46 -2.39 -0.02 0.09 16 9 N -0.71 5.22 5.36 -440.03 -2.36 2.86 16 10 C 0.51 -1.23 7.55 87.65 0.66 -0.57 16 11 O -0.56 -3.81 13.91 -3.03 -0.04 -3.85 16 12 C 0.04 -0.28 5.03 85.56 0.43 0.15 16 13 N -0.50 1.44 3.22 -724.44 -2.33 -0.89 16 14 C 0.02 -0.06 8.62 127.69 1.10 1.04 16 15 C 0.14 -0.25 4.61 38.21 0.18 -0.07 16 16 C -0.10 -0.24 5.28 -19.73 -0.10 -0.35 16 17 C -0.07 -0.19 2.30 71.24 0.16 -0.03 16 18 O -0.54 -2.94 12.65 -148.98 -1.89 -4.83 16 19 Si 0.79 1.70 30.41 68.60 2.09 3.78 16 20 C -0.08 -0.39 8.01 22.25 0.18 -0.21 16 21 C -0.19 -0.51 5.46 -19.84 -0.11 -0.62 16 22 C 0.51 2.52 3.36 71.24 0.24 2.76 16 23 F -0.18 -1.27 17.30 44.97 0.78 -0.50 16 24 F -0.17 -0.66 16.46 44.97 0.74 0.08 16 25 F -0.18 -1.37 16.45 44.97 0.74 -0.63 16 26 C -0.05 0.14 9.39 22.25 0.21 0.34 16 27 C -0.13 0.69 8.70 22.40 0.19 0.89 16 28 C -0.12 1.03 7.39 31.12 0.23 1.26 16 29 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H 0.09 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.09 -0.73 7.85 -2.39 -0.02 -0.75 16 34 H 0.10 -0.60 7.90 -2.39 -0.02 -0.62 16 35 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.42 -5.78 8.73 -92.72 -0.81 -6.59 16 37 H 0.10 -1.27 7.49 -2.39 -0.02 -1.29 16 38 H 0.12 -1.21 8.06 -2.38 -0.02 -1.23 16 39 H 0.05 -0.29 7.46 -2.39 -0.02 -0.31 16 40 H 0.07 -0.14 7.53 -2.39 -0.02 -0.16 16 41 H 0.08 0.13 5.88 -2.38 -0.01 0.11 16 42 H 0.09 0.11 7.78 -2.39 -0.02 0.09 16 43 H 0.37 1.08 7.59 -74.06 -0.56 0.52 16 44 H -0.29 -2.43 6.81 99.48 0.68 -1.75 16 45 H -0.26 -1.09 7.11 99.48 0.71 -0.38 16 46 H 0.13 0.81 4.47 -2.91 -0.01 0.80 16 47 H 0.16 -1.04 7.60 -2.91 -0.02 -1.07 16 48 H 0.17 -1.82 7.16 -2.91 -0.02 -1.84 16 49 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H 0.11 -1.41 8.08 -2.39 -0.02 -1.42 16 Total: 0.00 -18.07 427.64 1.50 -16.57 By element: Atomic # 1 Polarization: -18.50 SS G_CDS: -0.36 Total: -18.86 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.40 Total: 7.86 kcal Atomic # 7 Polarization: 6.66 SS G_CDS: -4.69 Total: 1.97 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.93 Total: -8.68 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 2.26 Total: -1.05 kcal Atomic # 14 Polarization: 1.70 SS G_CDS: 2.09 Total: 3.78 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -1.26 Total: -1.59 kcal Total: -18.07 1.50 -16.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_6406254.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.302 kcal (2) G-P(sol) polarization free energy of solvation -18.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds