Wall clock time and date at job start Sun Mar 7 2021 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81392 * 103.00082 * 2 1 4 4 C 1.52994 * 109.47516 * 180.02562 * 3 2 1 5 5 H 1.09004 * 112.84771 * 43.80030 * 4 3 2 6 6 C 1.53777 * 113.62159 * 174.99870 * 4 3 2 7 7 C 1.53777 * 87.08324 * 140.06311 * 6 4 3 8 8 H 1.09000 * 113.61458 * 89.20280 * 7 6 4 9 9 N 1.46504 * 113.61796 * 220.02224 * 7 6 4 10 10 C 1.34767 * 120.00027 * 205.00462 * 9 7 6 11 11 O 1.21690 * 120.00349 * 359.97438 * 10 9 7 12 12 C 1.46684 * 120.00098 * 179.97438 * 10 9 7 13 13 C 1.37870 * 126.23813 * 180.17546 * 12 10 9 14 14 C 1.39828 * 107.08722 * 180.23386 * 13 12 10 15 15 C 1.35453 * 107.86576 * 359.75451 * 14 13 12 16 16 C 1.50695 * 125.56434 * 180.02562 * 15 14 13 17 17 O 1.42904 * 109.47295 * 119.98165 * 16 15 14 18 18 Si 1.86304 * 109.47375 * 359.97438 * 16 15 14 19 19 N 1.35537 * 108.87115 * 0.02562 * 15 14 13 20 20 C 1.53780 * 113.69017 * 272.53876 * 4 3 2 21 21 H 1.09001 * 109.47011 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46799 * 299.99947 * 1 2 3 23 23 H 1.09000 * 109.47387 * 60.00195 * 1 2 3 24 24 H 1.08999 * 109.47065 * 59.99880 * 3 2 1 25 25 H 1.09006 * 109.47439 * 300.00092 * 3 2 1 26 26 H 1.09008 * 113.60801 * 25.51674 * 6 4 3 27 27 H 1.08996 * 113.69350 * 254.62707 * 6 4 3 28 28 H 0.97005 * 119.99754 * 24.99420 * 9 7 6 29 29 H 1.08007 * 126.45506 * 359.97438 * 13 12 10 30 30 H 1.08003 * 126.06704 * 179.78197 * 14 13 12 31 31 H 1.09004 * 109.47429 * 239.97631 * 16 15 14 32 32 H 0.96690 * 114.00320 * 180.02562 * 17 16 15 33 33 H 1.48501 * 109.99630 * 59.99688 * 18 16 15 34 34 H 1.48503 * 109.99853 * 181.31611 * 18 16 15 35 35 H 0.97001 * 125.67560 * 179.97438 * 19 15 14 36 36 H 1.09002 * 113.61659 * 105.45442 * 20 4 3 37 37 H 1.08999 * 113.61152 * 334.54875 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2443 1.2673 -0.6962 6 6 4.1962 3.4040 -0.1235 7 6 5.2889 3.0694 0.9055 8 1 6.2142 2.7071 0.4576 9 7 5.5114 4.1301 1.8913 10 6 6.7034 4.2347 2.5112 11 8 7.5949 3.4478 2.2525 12 6 6.9263 5.2970 3.4978 13 6 8.0895 5.5239 4.2024 14 6 7.8598 6.6271 5.0303 15 6 6.5903 7.0489 4.8178 16 6 5.9278 8.2153 5.5045 17 8 5.5321 9.1808 4.5281 18 14 7.1260 8.9951 6.6991 19 7 6.0132 6.2508 3.8867 20 6 4.3639 1.9475 1.4059 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8032 2.2370 0.8900 25 1 1.8032 2.2371 -0.8900 26 1 3.4598 4.1213 0.2392 27 1 4.5874 3.6602 -1.1081 28 1 4.8006 4.7572 2.0977 29 1 9.0043 4.9541 4.1315 30 1 8.5689 7.0653 5.7170 31 1 5.0491 7.8663 6.0470 32 1 5.0981 9.9609 4.8997 33 1 8.3284 9.4750 5.9717 34 1 6.4744 10.1269 7.4059 35 1 5.1064 6.3354 3.5527 36 1 4.8904 1.0263 1.6556 37 1 3.6734 2.2666 2.1866 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_6580494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:52 Heat of formation + Delta-G solvation = 0.862904 kcal Electronic energy + Delta-G solvation = -19486.264950 eV Core-core repulsion = 16357.836273 eV Total energy + Delta-G solvation = -3128.428677 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.47050 -40.95508 -39.22589 -37.91848 -34.91630 -32.20316 -31.59530 -30.60213 -29.73949 -26.99102 -26.85670 -24.32751 -22.53068 -21.45663 -21.34599 -20.72146 -19.42593 -18.75546 -17.74439 -16.98979 -16.84670 -16.41507 -16.33075 -16.02681 -15.38223 -15.23872 -14.92999 -14.78618 -14.63175 -14.31609 -14.09384 -14.06815 -13.74723 -13.59818 -13.52597 -13.48114 -12.97923 -12.78440 -12.24568 -12.01742 -11.68747 -11.55957 -11.07101 -10.94961 -10.76979 -10.14987 -10.02895 -9.20596 -8.67708 -5.00615 0.38810 0.64125 1.08880 1.52707 1.57901 1.58851 1.87364 2.03260 2.13792 2.41307 3.07469 3.30021 3.40977 3.58879 3.66415 3.68319 3.81658 4.05898 4.11937 4.12827 4.16682 4.18883 4.31022 4.39240 4.44126 4.52600 4.62964 4.70188 4.71374 4.86773 4.97066 5.03137 5.12887 5.15679 5.43255 5.66240 5.86523 6.17794 6.24761 6.44735 7.14853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.260 6.260 3 C -0.073 4.073 4 C -0.092 4.092 5 H 0.106 0.894 6 C -0.137 4.137 7 C 0.124 3.876 8 H 0.121 0.879 9 N -0.722 5.722 10 C 0.592 3.408 11 O -0.523 6.523 12 C -0.052 4.052 13 C -0.096 4.096 14 C -0.197 4.197 15 C 0.069 3.931 16 C -0.062 4.062 17 O -0.542 6.542 18 Si 0.714 3.286 19 N -0.524 5.524 20 C -0.143 4.143 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.394 0.606 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.385 0.615 33 H -0.250 1.250 34 H -0.260 1.260 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.213 2.913 2.646 6.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.034 6.034 3 C -0.222 4.222 4 C -0.112 4.112 5 H 0.124 0.876 6 C -0.177 4.177 7 C 0.020 3.980 8 H 0.139 0.861 9 N -0.373 5.373 10 C 0.380 3.620 11 O -0.398 6.398 12 C -0.165 4.165 13 C -0.123 4.123 14 C -0.221 4.221 15 C -0.049 4.049 16 C -0.171 4.171 17 O -0.350 6.350 18 Si 0.613 3.387 19 N -0.121 5.121 20 C -0.181 4.181 21 H 0.121 0.879 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.228 0.772 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.096 0.904 32 H 0.233 0.767 33 H -0.174 1.174 34 H -0.185 1.185 35 H 0.252 0.748 36 H 0.098 0.902 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.358 1.714 2.177 4.354 hybrid contribution -2.726 2.149 -0.637 3.530 sum -6.084 3.864 1.540 7.370 Atomic orbital electron populations 1.23401 0.94121 1.06777 1.04888 1.87092 1.07380 1.10930 1.98031 1.23379 0.99089 0.94791 1.04893 1.22104 0.92673 0.97393 0.99020 0.87619 1.23432 0.97741 0.96320 1.00161 1.22538 0.98660 0.87751 0.89081 0.86080 1.45866 1.14559 1.33722 1.43138 1.17077 0.82324 0.82934 0.79696 1.90871 1.42909 1.42225 1.63798 1.20447 0.92477 0.97183 1.06441 1.21320 0.97021 0.97833 0.96075 1.20651 0.94981 1.01053 1.05449 1.19853 0.94287 0.94707 0.96044 1.24610 1.05902 0.89774 0.96841 1.86566 1.80644 1.33224 1.34573 0.94310 0.78933 0.83862 0.81624 1.41894 1.13774 1.23898 1.32503 1.23549 0.98528 0.99728 0.96339 0.87912 0.90514 0.90456 0.90055 0.89785 0.89458 0.89965 0.77226 0.82791 0.83046 0.90432 0.76673 1.17351 1.18464 0.74764 0.90184 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 10.76 101.05 1.09 1.25 16 2 S -0.26 -0.23 22.37 -107.50 -2.40 -2.64 16 3 C -0.07 0.11 5.78 37.15 0.21 0.32 16 4 C -0.09 0.14 3.65 -89.81 -0.33 -0.19 16 5 H 0.11 -0.08 8.13 -51.93 -0.42 -0.50 16 6 C -0.14 0.33 7.39 -25.92 -0.19 0.14 16 7 C 0.12 -0.06 4.24 -67.12 -0.28 -0.34 16 8 H 0.12 0.16 7.46 -51.93 -0.39 -0.23 16 9 N -0.72 0.29 5.35 -54.32 -0.29 0.00 16 10 C 0.59 1.74 7.79 -12.86 -0.10 1.64 16 11 O -0.52 -3.51 16.48 5.20 0.09 -3.42 16 12 C -0.05 -0.11 7.06 -81.98 -0.58 -0.69 16 13 C -0.10 -0.22 10.65 -39.12 -0.42 -0.64 16 14 C -0.20 -0.17 9.32 -39.98 -0.37 -0.54 16 15 C 0.07 0.03 6.51 -81.95 -0.53 -0.51 16 16 C -0.06 0.10 3.07 36.00 0.11 0.21 16 17 O -0.54 0.35 12.86 -35.23 -0.45 -0.11 16 18 Si 0.71 -1.55 30.54 -169.99 -5.19 -6.75 16 19 N -0.52 0.07 5.99 -5.69 -0.03 0.03 16 20 C -0.14 0.11 7.43 -25.92 -0.19 -0.08 16 21 H 0.10 -0.17 8.14 -51.92 -0.42 -0.59 16 22 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 23 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 24 H 0.08 -0.17 7.85 -51.92 -0.41 -0.58 16 25 H 0.08 -0.17 8.14 -51.92 -0.42 -0.59 16 26 H 0.09 -0.32 8.08 -51.92 -0.42 -0.74 16 27 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 28 H 0.39 -1.22 7.86 -40.82 -0.32 -1.54 16 29 H 0.15 0.29 8.06 -52.48 -0.42 -0.14 16 30 H 0.15 -0.19 6.17 -52.48 -0.32 -0.51 16 31 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 32 H 0.38 -1.75 8.74 45.56 0.40 -1.35 16 33 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 34 H -0.26 0.10 7.11 56.52 0.40 0.50 16 35 H 0.42 -1.12 8.19 -40.82 -0.33 -1.45 16 36 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.09 -0.10 7.90 -51.93 -0.41 -0.51 16 LS Contribution 326.70 15.07 4.92 4.92 Total: 0.00 -8.24 326.70 -10.15 -18.38 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: -5.20 Total: -11.01 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.59 Total: 0.58 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -0.32 Total: 0.03 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.37 Total: -3.52 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: -5.19 Total: -6.75 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.40 Total: -2.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -8.24 -10.15 -18.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_6580494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.248 kcal (2) G-P(sol) polarization free energy of solvation -8.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds