Wall clock time and date at job start Sun Mar 7 2021 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35966 * 116.99772 * 2 1 4 4 C 1.39441 * 120.12205 * 179.97438 * 3 2 1 5 5 O 1.34774 * 133.24273 * 0.02562 * 4 3 2 6 6 C 1.34933 * 110.84299 * 179.97438 * 5 4 3 7 7 C 1.46993 * 125.13863 * 179.97438 * 6 5 4 8 8 O 1.21652 * 119.99909 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00178 * 359.97374 * 7 6 5 10 10 C 1.46501 * 119.99988 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.84813 * 23.81164 * 10 9 7 12 12 C 1.53781 * 113.61259 * 155.00026 * 10 9 7 13 13 C 1.53785 * 87.08037 * 139.98222 * 12 10 9 14 14 H 1.09001 * 113.61194 * 89.20065 * 13 12 10 15 15 C 1.52991 * 113.61553 * 220.02322 * 13 12 10 16 16 S 1.81404 * 109.47038 * 185.00270 * 15 13 12 17 17 C 1.81401 * 103.00128 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61306 * 252.50009 * 10 9 7 19 19 C 1.35809 * 109.71996 * 359.74077 * 6 5 4 20 20 C 1.40615 * 119.13875 * 179.97438 * 4 3 2 21 21 C 1.39780 * 120.11786 * 0.02562 * 20 4 3 22 22 C 1.50697 * 120.09405 * 179.97438 * 21 20 4 23 23 O 1.42908 * 109.46943 * 75.00769 * 22 21 20 24 24 Si 1.86300 * 109.47256 * 195.00441 * 22 21 20 25 25 C 1.36625 * 119.81108 * 359.97438 * 21 20 4 26 26 C 1.38263 * 120.11977 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.46497 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47310 * 300.00356 * 1 2 3 29 29 H 1.08992 * 109.47047 * 60.00252 * 1 2 3 30 30 H 0.97002 * 119.99974 * 0.02562 * 9 7 6 31 31 H 1.08997 * 113.61609 * 254.53088 * 12 10 9 32 32 H 1.09002 * 113.60941 * 25.43766 * 12 10 9 33 33 H 1.09007 * 109.47168 * 304.99976 * 15 13 12 34 34 H 1.08997 * 109.47461 * 64.99723 * 15 13 12 35 35 H 1.08998 * 109.47590 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.46923 * 299.99711 * 17 16 15 37 37 H 1.09000 * 109.47575 * 59.99508 * 17 16 15 38 38 H 1.08995 * 113.61789 * 334.57025 * 18 10 9 39 39 H 1.08998 * 113.61251 * 105.47481 * 18 10 9 40 40 H 1.08001 * 126.95678 * 180.02562 * 19 6 5 41 41 H 1.08999 * 109.47435 * 315.01061 * 22 21 20 42 42 H 0.96694 * 113.99932 * 59.99456 * 23 22 21 43 43 H 1.48503 * 110.00006 * 180.02562 * 24 22 21 44 44 H 1.48498 * 109.99916 * 301.32124 * 24 22 21 45 45 H 1.08008 * 119.75212 * 179.97438 * 25 21 20 46 46 H 1.08000 * 119.66543 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4386 1.2875 0.0005 5 8 4.4141 0.3575 0.0007 6 6 5.6317 0.9389 0.0007 7 6 6.9131 0.2187 0.0014 8 8 7.9595 0.8391 0.0009 9 7 6.9287 -1.1290 0.0026 10 6 8.2059 -1.8467 0.0027 11 1 9.0252 -1.2526 0.4074 12 6 8.1175 -3.2612 0.5995 13 6 9.0658 -3.7098 -0.5250 14 1 10.1211 -3.6268 -0.2652 15 6 8.7064 -5.0712 -1.1232 16 16 9.9734 -5.5560 -2.3276 17 6 9.3820 -7.1667 -2.9161 18 6 8.5348 -2.5190 -1.3407 19 6 5.4944 2.2900 -0.0052 20 6 4.0553 2.5512 0.0000 21 6 3.2764 3.7118 -0.0006 22 6 3.9379 5.0658 -0.0006 23 8 4.4607 5.3405 -1.3019 24 14 2.6860 6.3687 0.4534 25 6 1.9136 3.6152 -0.0011 26 6 1.2956 2.3726 -0.0005 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 6.0944 -1.6237 0.0026 31 1 8.5521 -3.3428 1.5957 32 1 7.1226 -3.7016 0.5332 33 1 8.6569 -5.8157 -0.3285 34 1 7.7386 -5.0057 -1.6204 35 1 10.0772 -7.5604 -3.6576 36 1 9.3159 -7.8585 -2.0763 37 1 8.3972 -7.0492 -3.3683 38 1 7.6540 -2.7565 -1.9373 39 1 9.3063 -2.0015 -1.9106 40 1 6.2873 3.0233 -0.0070 41 1 4.7501 5.0734 0.7262 42 1 3.7921 5.3495 -2.0005 43 1 3.3258 7.7088 0.4563 44 1 1.5578 6.3471 -0.5119 45 1 1.3126 4.5126 -0.0011 46 1 0.2173 2.3120 -0.0005 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:54 Heat of formation + Delta-G solvation = -39.869185 kcal Electronic energy + Delta-G solvation = -29743.589332 eV Core-core repulsion = 25501.239866 eV Total energy + Delta-G solvation = -4242.349466 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.122 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.66053 -41.25088 -40.63253 -39.42075 -39.12168 -37.09325 -34.93812 -33.55916 -31.96246 -31.22654 -30.49860 -29.71588 -28.68700 -26.83188 -26.41256 -25.54094 -23.95893 -23.26927 -21.90751 -21.65276 -20.87706 -19.64486 -18.98210 -18.56669 -17.93542 -17.67807 -17.63657 -17.01956 -16.91614 -16.65979 -16.45678 -16.22507 -15.89450 -15.80265 -15.69274 -15.17562 -14.79273 -14.75545 -14.65259 -14.51660 -14.30826 -14.10620 -13.91780 -13.58267 -13.47367 -13.46343 -13.44120 -13.34304 -12.99115 -12.63962 -12.36181 -12.25332 -12.14153 -11.68709 -11.66920 -11.55779 -11.29126 -10.94183 -10.91908 -10.61424 -10.19368 -9.76636 -8.99821 -8.64377 -5.00490 -0.58497 0.11542 0.67375 0.72080 1.21020 1.30661 1.51728 1.61302 1.91539 1.96310 2.06021 2.06658 2.39956 3.21324 3.32227 3.37901 3.43332 3.50384 3.60085 3.63549 3.68939 3.82953 3.86893 3.99620 4.07236 4.07576 4.15535 4.16199 4.17994 4.20669 4.22288 4.43046 4.43407 4.46994 4.48286 4.57603 4.65832 4.69230 4.74672 4.83272 4.88275 4.89596 4.98691 5.07038 5.12580 5.23191 5.30181 5.42624 5.64242 6.15048 6.35230 6.39062 6.95474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.150 3.850 4 C 0.046 3.954 5 O -0.174 6.174 6 C -0.024 4.024 7 C 0.603 3.397 8 O -0.508 6.508 9 N -0.707 5.707 10 C 0.121 3.879 11 H 0.123 0.877 12 C -0.135 4.135 13 C -0.092 4.092 14 H 0.106 0.894 15 C -0.073 4.073 16 S -0.261 6.261 17 C -0.123 4.123 18 C -0.143 4.143 19 C -0.104 4.104 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.074 4.074 23 O -0.525 6.525 24 Si 0.692 3.308 25 C -0.096 4.096 26 C -0.178 4.178 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.175 0.825 41 H 0.119 0.881 42 H 0.375 0.625 43 H -0.255 1.255 44 H -0.258 1.258 45 H 0.140 0.860 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -2.917 2.348 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.105 3.895 4 C -0.002 4.002 5 O -0.076 6.076 6 C -0.074 4.074 7 C 0.388 3.612 8 O -0.385 6.385 9 N -0.357 5.357 10 C 0.016 3.984 11 H 0.140 0.860 12 C -0.175 4.175 13 C -0.112 4.112 14 H 0.124 0.876 15 C -0.222 4.222 16 S -0.035 6.035 17 C -0.292 4.292 18 C -0.182 4.182 19 C -0.124 4.124 20 C -0.083 4.083 21 C -0.095 4.095 22 C -0.183 4.183 23 O -0.331 6.331 24 Si 0.593 3.407 25 C -0.114 4.114 26 C -0.197 4.197 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.192 0.808 41 H 0.137 0.863 42 H 0.223 0.777 43 H -0.180 1.180 44 H -0.183 1.183 45 H 0.158 0.842 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.203 -1.706 2.106 5.866 hybrid contribution -1.737 -1.148 -0.918 2.275 sum -6.940 -2.854 1.189 7.597 Atomic orbital electron populations 1.23190 0.77319 1.04743 1.01804 1.86172 1.22155 1.25706 1.88381 1.17742 0.86501 0.85873 0.99431 1.18775 0.87441 0.86988 1.07046 1.84047 1.12671 1.34733 1.76130 1.21998 0.83890 0.92624 1.08931 1.16658 0.85393 0.82287 0.76819 1.90922 1.30322 1.67451 1.49775 1.45895 1.10168 1.05611 1.74015 1.22638 0.86578 0.91594 0.97558 0.85965 1.23435 1.00524 0.94514 0.99030 1.22107 1.00614 0.91879 0.96592 0.87592 1.23388 0.99403 1.00023 0.99361 1.87073 1.37551 1.25157 1.53770 1.23397 1.04934 0.96386 1.04443 1.23564 1.01918 0.95944 0.96772 1.22757 0.94760 0.94349 1.00545 1.19413 0.92634 0.92045 1.04167 1.19403 0.92812 0.94335 1.02979 1.25035 1.06855 0.97936 0.88498 1.86643 1.37578 1.92648 1.16247 0.94904 0.77533 0.77894 0.90389 1.20588 0.93489 0.97803 0.99513 1.20966 1.00351 0.90535 1.07812 0.87656 0.92003 0.92167 0.75601 0.89842 0.89126 0.89722 0.89939 0.87948 0.90448 0.90491 0.89319 0.90140 0.80789 0.86332 0.77714 1.17962 1.18331 0.84241 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.37 10.50 -19.63 -0.21 -0.58 16 3 C 0.15 0.23 6.70 -39.12 -0.26 -0.03 16 4 C 0.05 0.14 7.35 -38.24 -0.28 -0.14 16 5 O -0.17 -0.56 10.28 2.65 0.03 -0.53 16 6 C -0.02 -0.08 7.07 -36.91 -0.26 -0.34 16 7 C 0.60 1.93 7.80 -12.71 -0.10 1.84 16 8 O -0.51 -3.11 16.42 5.23 0.09 -3.02 16 9 N -0.71 -0.27 5.35 -54.23 -0.29 -0.56 16 10 C 0.12 -0.04 4.24 -67.12 -0.28 -0.33 16 11 H 0.12 0.11 7.46 -51.93 -0.39 -0.28 16 12 C -0.14 0.31 7.39 -25.92 -0.19 0.12 16 13 C -0.09 0.13 3.66 -89.81 -0.33 -0.20 16 14 H 0.11 -0.08 8.13 -51.93 -0.42 -0.51 16 15 C -0.07 0.09 5.78 37.15 0.21 0.30 16 16 S -0.26 -0.29 22.37 -107.50 -2.40 -2.69 16 17 C -0.12 0.13 10.76 101.05 1.09 1.22 16 18 C -0.14 0.07 7.43 -25.91 -0.19 -0.12 16 19 C -0.10 -0.31 10.68 -37.23 -0.40 -0.71 16 20 C -0.08 -0.21 6.16 -105.20 -0.65 -0.85 16 21 C -0.09 -0.06 5.26 -104.63 -0.55 -0.61 16 22 C -0.07 0.00 2.71 36.00 0.10 0.10 16 23 O -0.52 -0.79 12.88 -35.23 -0.45 -1.24 16 24 Si 0.69 -1.00 30.25 -169.99 -5.14 -6.14 16 25 C -0.10 0.08 8.62 -39.97 -0.34 -0.27 16 26 C -0.18 0.13 9.03 -39.37 -0.36 -0.22 16 27 H 0.11 -0.44 8.14 -51.93 -0.42 -0.87 16 28 H 0.06 -0.26 7.66 -51.93 -0.40 -0.65 16 29 H 0.06 -0.24 7.66 -51.93 -0.40 -0.63 16 30 H 0.41 -0.52 8.44 -40.82 -0.34 -0.87 16 31 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 32 H 0.09 -0.29 8.08 -51.93 -0.42 -0.71 16 33 H 0.08 -0.15 8.14 -51.92 -0.42 -0.58 16 34 H 0.08 -0.14 7.84 -51.93 -0.41 -0.55 16 35 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 37 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 38 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 39 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.17 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 42 H 0.38 -0.55 8.70 45.56 0.40 -0.16 16 43 H -0.25 -0.51 7.11 56.52 0.40 -0.10 16 44 H -0.26 0.07 6.69 56.52 0.38 0.45 16 45 H 0.14 -0.38 4.81 -52.48 -0.25 -0.63 16 46 H 0.15 -0.51 6.26 -52.49 -0.33 -0.84 16 LS Contribution 398.24 15.07 6.00 6.00 Total: 0.00 -8.08 398.24 -10.58 -18.66 By element: Atomic # 1 Polarization: -4.17 SS G_CDS: -6.39 Total: -10.56 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.81 Total: 0.67 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -0.29 Total: -0.56 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.55 Total: -5.37 kcal Atomic # 14 Polarization: -1.00 SS G_CDS: -5.14 Total: -6.14 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -2.40 Total: -2.69 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -8.08 -10.58 -18.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.214 kcal (2) G-P(sol) polarization free energy of solvation -8.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds