Wall clock time and date at job start Sun Mar 7 2021 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35966 * 116.99772 * 2 1 4 4 C 1.39441 * 120.12205 * 179.97438 * 3 2 1 5 5 O 1.34774 * 133.24273 * 0.02562 * 4 3 2 6 6 C 1.34933 * 110.84299 * 179.97438 * 5 4 3 7 7 C 1.46993 * 125.13863 * 179.97438 * 6 5 4 8 8 O 1.21652 * 119.99909 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00178 * 359.97374 * 7 6 5 10 10 C 1.46501 * 119.99988 * 179.97438 * 9 7 6 11 11 H 1.08998 * 112.84813 * 23.81164 * 10 9 7 12 12 C 1.53781 * 113.61259 * 155.00026 * 10 9 7 13 13 C 1.53785 * 87.08037 * 139.98222 * 12 10 9 14 14 H 1.09001 * 113.61194 * 89.20065 * 13 12 10 15 15 C 1.52991 * 113.61553 * 220.02322 * 13 12 10 16 16 S 1.81404 * 109.47038 * 185.00270 * 15 13 12 17 17 C 1.81401 * 103.00128 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61306 * 252.50009 * 10 9 7 19 19 C 1.35809 * 109.71996 * 359.74077 * 6 5 4 20 20 C 1.40615 * 119.13875 * 179.97438 * 4 3 2 21 21 C 1.39780 * 120.11786 * 0.02562 * 20 4 3 22 22 C 1.50697 * 120.09405 * 179.97438 * 21 20 4 23 23 O 1.42908 * 109.46943 * 75.00769 * 22 21 20 24 24 Si 1.86300 * 109.47256 * 195.00441 * 22 21 20 25 25 C 1.36625 * 119.81108 * 359.97438 * 21 20 4 26 26 C 1.38263 * 120.11977 * 359.97438 * 3 2 1 27 27 H 1.09003 * 109.46497 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47310 * 300.00356 * 1 2 3 29 29 H 1.08992 * 109.47047 * 60.00252 * 1 2 3 30 30 H 0.97002 * 119.99974 * 0.02562 * 9 7 6 31 31 H 1.08997 * 113.61609 * 254.53088 * 12 10 9 32 32 H 1.09002 * 113.60941 * 25.43766 * 12 10 9 33 33 H 1.09007 * 109.47168 * 304.99976 * 15 13 12 34 34 H 1.08997 * 109.47461 * 64.99723 * 15 13 12 35 35 H 1.08998 * 109.47590 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.46923 * 299.99711 * 17 16 15 37 37 H 1.09000 * 109.47575 * 59.99508 * 17 16 15 38 38 H 1.08995 * 113.61789 * 334.57025 * 18 10 9 39 39 H 1.08998 * 113.61251 * 105.47481 * 18 10 9 40 40 H 1.08001 * 126.95678 * 180.02562 * 19 6 5 41 41 H 1.08999 * 109.47435 * 315.01061 * 22 21 20 42 42 H 0.96694 * 113.99932 * 59.99456 * 23 22 21 43 43 H 1.48503 * 110.00006 * 180.02562 * 24 22 21 44 44 H 1.48498 * 109.99916 * 301.32124 * 24 22 21 45 45 H 1.08008 * 119.75212 * 179.97438 * 25 21 20 46 46 H 1.08000 * 119.66543 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4386 1.2875 0.0005 5 8 4.4141 0.3575 0.0007 6 6 5.6317 0.9389 0.0007 7 6 6.9131 0.2187 0.0014 8 8 7.9595 0.8391 0.0009 9 7 6.9287 -1.1290 0.0026 10 6 8.2059 -1.8467 0.0027 11 1 9.0252 -1.2526 0.4074 12 6 8.1175 -3.2612 0.5995 13 6 9.0658 -3.7098 -0.5250 14 1 10.1211 -3.6268 -0.2652 15 6 8.7064 -5.0712 -1.1232 16 16 9.9734 -5.5560 -2.3276 17 6 9.3820 -7.1667 -2.9161 18 6 8.5348 -2.5190 -1.3407 19 6 5.4944 2.2900 -0.0052 20 6 4.0553 2.5512 0.0000 21 6 3.2764 3.7118 -0.0006 22 6 3.9379 5.0658 -0.0006 23 8 4.4607 5.3405 -1.3019 24 14 2.6860 6.3687 0.4534 25 6 1.9136 3.6152 -0.0011 26 6 1.2956 2.3726 -0.0005 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 6.0944 -1.6237 0.0026 31 1 8.5521 -3.3428 1.5957 32 1 7.1226 -3.7016 0.5332 33 1 8.6569 -5.8157 -0.3285 34 1 7.7386 -5.0057 -1.6204 35 1 10.0772 -7.5604 -3.6576 36 1 9.3159 -7.8585 -2.0763 37 1 8.3972 -7.0492 -3.3683 38 1 7.6540 -2.7565 -1.9373 39 1 9.3063 -2.0015 -1.9106 40 1 6.2873 3.0233 -0.0070 41 1 4.7501 5.0734 0.7262 42 1 3.7921 5.3495 -2.0005 43 1 3.3258 7.7088 0.4563 44 1 1.5578 6.3471 -0.5119 45 1 1.3126 4.5126 -0.0011 46 1 0.2173 2.3120 -0.0005 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_6672420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:53 Heat of formation + Delta-G solvation = -38.233908 kcal Electronic energy + Delta-G solvation = -29743.518421 eV Core-core repulsion = 25501.239866 eV Total energy + Delta-G solvation = -4242.278555 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.78550 -41.35564 -40.61799 -39.54769 -39.13799 -37.12916 -35.08607 -33.68336 -31.98977 -31.27028 -30.47223 -29.63723 -28.52953 -26.76983 -26.38853 -25.62221 -24.02995 -23.28838 -21.97914 -21.80331 -20.86891 -19.70024 -19.04858 -18.56108 -18.00537 -17.80143 -17.69460 -17.08002 -16.95546 -16.62201 -16.43850 -16.22682 -15.92629 -15.85434 -15.80078 -15.19347 -14.80186 -14.70360 -14.59615 -14.56942 -14.27055 -14.21746 -13.86541 -13.52270 -13.48124 -13.43828 -13.42968 -13.27887 -13.00328 -12.48664 -12.28125 -12.26718 -12.13555 -11.67344 -11.66260 -11.59144 -11.42884 -11.04772 -10.90381 -10.61850 -10.31668 -9.85182 -9.03111 -8.71439 -4.89497 -0.70329 0.07636 0.58209 0.71919 1.14504 1.29759 1.58978 1.66774 1.84008 1.89108 1.97795 2.12250 2.37182 3.14533 3.36036 3.38696 3.49863 3.53258 3.63999 3.68697 3.72263 3.79358 3.85093 3.95675 4.14459 4.21388 4.27948 4.30118 4.32214 4.32727 4.41689 4.42636 4.48202 4.51359 4.67621 4.69320 4.76127 4.77166 4.81350 4.84817 4.85918 4.91557 5.00454 5.02755 5.09306 5.19740 5.30394 5.43817 5.56952 6.16933 6.27266 6.49239 6.78664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.138 3.862 4 C 0.022 3.978 5 O -0.180 6.180 6 C -0.033 4.033 7 C 0.602 3.398 8 O -0.547 6.547 9 N -0.691 5.691 10 C 0.113 3.887 11 H 0.107 0.893 12 C -0.118 4.118 13 C -0.087 4.087 14 H 0.098 0.902 15 C -0.058 4.058 16 S -0.326 6.326 17 C -0.111 4.111 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.096 4.096 21 C -0.100 4.100 22 C -0.091 4.091 23 O -0.548 6.548 24 Si 0.783 3.217 25 C -0.088 4.088 26 C -0.165 4.165 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.063 0.937 40 H 0.171 0.829 41 H 0.114 0.886 42 H 0.386 0.614 43 H -0.305 1.305 44 H -0.262 1.262 45 H 0.166 0.834 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.920 -3.511 2.832 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.092 3.908 4 C -0.027 4.027 5 O -0.082 6.082 6 C -0.083 4.083 7 C 0.388 3.612 8 O -0.426 6.426 9 N -0.341 5.341 10 C 0.009 3.991 11 H 0.125 0.875 12 C -0.158 4.158 13 C -0.107 4.107 14 H 0.116 0.884 15 C -0.206 4.206 16 S -0.100 6.100 17 C -0.279 4.279 18 C -0.181 4.181 19 C -0.134 4.134 20 C -0.097 4.097 21 C -0.101 4.101 22 C -0.198 4.198 23 O -0.356 6.356 24 Si 0.686 3.314 25 C -0.106 4.106 26 C -0.184 4.184 27 H 0.134 0.866 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.256 0.744 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.188 0.812 41 H 0.132 0.868 42 H 0.236 0.764 43 H -0.234 1.234 44 H -0.187 1.187 45 H 0.183 0.817 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.088 -2.368 2.585 8.815 hybrid contribution -0.888 -0.948 -1.095 1.699 sum -8.976 -3.316 1.490 9.684 Atomic orbital electron populations 1.23490 0.75302 1.06033 1.03167 1.86145 1.24315 1.25776 1.88429 1.17971 0.86055 0.86869 0.99907 1.19209 0.88250 0.87087 1.08111 1.84006 1.12652 1.35017 1.76510 1.21936 0.84029 0.92719 1.09651 1.16736 0.84974 0.82993 0.76523 1.90892 1.31484 1.68318 1.51921 1.45854 1.11008 1.04749 1.72502 1.22711 0.85820 0.92348 0.98206 0.87529 1.23379 1.01167 0.92294 0.98911 1.22035 1.00448 0.91570 0.96665 0.88368 1.23374 0.98520 0.99959 0.98760 1.87300 1.39861 1.27552 1.55312 1.23401 1.05178 0.94588 1.04777 1.23545 1.01651 0.96314 0.96571 1.22856 0.95439 0.94455 1.00645 1.19576 0.92270 0.92858 1.05025 1.19552 0.93491 0.93849 1.03185 1.25403 1.07756 0.98712 0.87925 1.86610 1.38973 1.92795 1.17264 0.93889 0.75392 0.73394 0.88694 1.20890 0.92888 0.98866 0.97950 1.21377 1.01821 0.89566 1.05588 0.86612 0.90433 0.90867 0.74449 0.89001 0.87373 0.88503 0.89007 0.87797 0.89472 0.89668 0.88820 0.91854 0.81199 0.86768 0.76446 1.23361 1.18744 0.81717 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.62 10.50 -93.17 -0.98 -1.59 16 3 C 0.14 0.36 6.70 22.57 0.15 0.51 16 4 C 0.02 0.15 7.35 23.14 0.17 0.32 16 5 O -0.18 -1.45 10.28 -13.43 -0.14 -1.59 16 6 C -0.03 -0.28 7.07 24.00 0.17 -0.11 16 7 C 0.60 5.31 7.80 86.54 0.67 5.98 16 8 O -0.55 -8.38 16.42 -4.20 -0.07 -8.45 16 9 N -0.69 -1.46 5.35 -443.71 -2.37 -3.83 16 10 C 0.11 0.06 4.24 45.52 0.19 0.25 16 11 H 0.11 0.43 7.46 -2.39 -0.02 0.41 16 12 C -0.12 0.59 7.39 31.12 0.23 0.82 16 13 C -0.09 0.21 3.66 -10.27 -0.04 0.17 16 14 H 0.10 -0.05 8.13 -2.39 -0.02 -0.07 16 15 C -0.06 0.16 5.78 71.98 0.42 0.58 16 16 S -0.33 -0.93 22.37 -56.49 -1.26 -2.19 16 17 C -0.11 0.27 10.76 113.37 1.22 1.49 16 18 C -0.14 -0.03 7.43 31.12 0.23 0.20 16 19 C -0.11 -0.97 10.68 23.79 0.25 -0.72 16 20 C -0.10 -0.61 6.16 -20.24 -0.12 -0.74 16 21 C -0.10 -0.13 5.26 -19.87 -0.10 -0.23 16 22 C -0.09 -0.04 2.71 71.23 0.19 0.16 16 23 O -0.55 -2.16 12.88 -148.98 -1.92 -4.08 16 24 Si 0.78 -2.97 30.25 68.60 2.08 -0.89 16 25 C -0.09 0.30 8.62 22.02 0.19 0.49 16 26 C -0.17 0.57 9.03 22.40 0.20 0.77 16 27 H 0.12 -1.15 8.14 -2.39 -0.02 -1.17 16 28 H 0.08 -0.83 7.66 -2.39 -0.02 -0.85 16 29 H 0.07 -0.75 7.66 -2.39 -0.02 -0.76 16 30 H 0.42 -0.81 8.44 -92.71 -0.78 -1.59 16 31 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 32 H 0.11 -0.87 8.08 -2.39 -0.02 -0.89 16 33 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H 0.09 -0.41 7.84 -2.39 -0.02 -0.42 16 35 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 38 H 0.09 -0.07 7.90 -2.39 -0.02 -0.09 16 39 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.11 0.07 7.96 -2.39 -0.02 0.05 16 42 H 0.39 -0.99 8.70 -74.06 -0.64 -1.63 16 43 H -0.31 -1.45 7.11 99.48 0.71 -0.75 16 44 H -0.26 0.81 6.69 99.48 0.67 1.48 16 45 H 0.17 -1.42 4.81 -2.91 -0.01 -1.44 16 46 H 0.18 -1.89 6.26 -2.91 -0.02 -1.91 16 Total: 0.00 -21.93 398.24 0.08 -21.85 By element: Atomic # 1 Polarization: -9.78 SS G_CDS: -0.40 Total: -10.17 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.14 Total: 10.96 kcal Atomic # 7 Polarization: -1.46 SS G_CDS: -2.37 Total: -3.83 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -3.10 Total: -15.71 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.08 Total: -0.89 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.26 Total: -2.19 kcal Total: -21.93 0.08 -21.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_6672420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.383 kcal (2) G-P(sol) polarization free energy of solvation -21.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds