Wall clock time and date at job start Sun Mar 7 2021 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81403 * 102.99934 * 2 1 4 4 C 1.52996 * 109.46991 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.84976 * 43.80475 * 4 3 2 6 6 C 1.53780 * 113.61252 * 174.99815 * 4 3 2 7 7 C 1.53780 * 87.08118 * 140.06466 * 6 4 3 8 8 H 1.08994 * 113.61509 * 89.19976 * 7 6 4 9 9 N 1.46504 * 113.61241 * 220.01809 * 7 6 4 10 10 C 1.34777 * 119.99854 * 204.99551 * 9 7 6 11 11 O 1.21643 * 119.99986 * 0.02562 * 10 9 7 12 12 C 1.47192 * 120.00208 * 180.27760 * 10 9 7 13 13 C 1.36009 * 123.45877 * 359.43186 * 12 10 9 14 14 S 1.70448 * 110.81900 * 179.85719 * 13 12 10 15 15 C 1.75507 * 92.44311 * 0.34763 * 14 13 12 16 16 C 1.50695 * 124.71207 * 179.78181 * 15 14 13 17 17 O 1.42897 * 109.47126 * 120.02798 * 16 15 14 18 18 Si 1.86295 * 109.47270 * 0.02562 * 16 15 14 19 19 C 1.32772 * 110.57647 * 359.80410 * 15 14 13 20 20 C 1.53782 * 113.68798 * 272.53090 * 4 3 2 21 21 H 1.09000 * 109.46760 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46783 * 300.00368 * 1 2 3 23 23 H 1.08996 * 109.47068 * 59.99994 * 1 2 3 24 24 H 1.08997 * 109.47541 * 59.99565 * 3 2 1 25 25 H 1.09004 * 109.46978 * 300.00317 * 3 2 1 26 26 H 1.08999 * 113.62000 * 25.51542 * 6 4 3 27 27 H 1.08999 * 113.69309 * 254.62427 * 6 4 3 28 28 H 0.97000 * 120.00410 * 25.00276 * 9 7 6 29 29 H 1.08002 * 124.58780 * 359.97438 * 13 12 10 30 30 H 1.09008 * 109.46866 * 240.02040 * 16 15 14 31 31 H 0.96703 * 113.99992 * 180.02562 * 17 16 15 32 32 H 1.48504 * 110.00103 * 298.68053 * 18 16 15 33 33 H 1.48494 * 109.99925 * 60.00190 * 18 16 15 34 34 H 1.08000 * 123.46159 * 179.97438 * 19 15 14 35 35 H 1.09004 * 113.61281 * 105.46635 * 20 4 3 36 36 H 1.08992 * 113.61821 * 334.55882 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.2443 1.2674 -0.6962 6 6 4.1961 3.4041 -0.1235 7 6 5.2889 3.0696 0.9054 8 1 6.2141 2.7072 0.4576 9 7 5.5113 4.1304 1.8911 10 6 6.7033 4.2349 2.5112 11 8 7.5947 3.4488 2.2521 12 6 6.9249 5.2969 3.5060 13 6 5.9811 6.2158 3.8447 14 16 6.5774 7.2891 5.0269 15 6 8.1421 6.4951 5.0665 16 6 9.2953 6.9145 5.9412 17 8 9.6521 5.8362 6.8083 18 14 8.7966 8.3920 6.9603 19 6 8.1687 5.4740 4.2183 20 6 4.3638 1.9477 1.4060 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8032 2.2372 0.8899 25 1 1.8031 2.2372 -0.8900 26 1 3.4599 4.1214 0.2390 27 1 4.5873 3.6603 -1.1082 28 1 4.8006 4.7574 2.0976 29 1 4.9877 6.2583 3.4231 30 1 10.1493 7.1757 5.3160 31 1 10.3892 6.0359 7.4016 32 1 8.4537 9.5304 6.0706 33 1 7.6333 8.0487 7.8171 34 1 9.0320 4.8410 4.0754 35 1 4.8904 1.0265 1.6557 36 1 3.6734 2.2667 2.1867 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:31:59 Heat of formation + Delta-G solvation = -10.893062 kcal Electronic energy + Delta-G solvation = -19128.635840 eV Core-core repulsion = 16026.049403 eV Total energy + Delta-G solvation = -3102.586437 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 300.064 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30670 -39.78716 -38.53465 -37.12172 -34.85169 -32.04494 -30.57669 -29.71082 -26.97960 -26.82511 -26.01599 -23.41617 -21.79282 -21.00886 -20.21355 -18.75986 -18.42850 -18.09331 -17.55574 -16.73718 -16.52024 -16.21400 -16.01908 -15.63598 -15.29108 -15.00008 -14.76638 -14.35477 -14.32656 -13.98561 -13.92079 -13.80330 -13.65877 -13.57051 -13.42506 -12.92833 -12.66581 -12.32786 -12.16161 -12.09436 -11.65552 -11.52368 -10.93463 -10.84979 -10.53454 -10.09083 -9.95023 -9.51959 -8.65731 -5.32351 -0.38252 0.34313 0.66159 0.69773 0.90012 1.12812 1.49909 1.60020 1.81258 2.11742 2.35935 3.25306 3.33715 3.43896 3.60103 3.62589 3.71846 3.82735 3.95602 4.14257 4.14968 4.19784 4.21224 4.25496 4.33303 4.42242 4.56348 4.65741 4.70125 4.73109 4.73454 4.90874 5.00331 5.02532 5.20233 5.21697 5.51183 6.45003 6.51116 7.21658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.261 6.261 3 C -0.073 4.073 4 C -0.092 4.092 5 H 0.105 0.895 6 C -0.136 4.136 7 C 0.124 3.876 8 H 0.120 0.880 9 N -0.716 5.716 10 C 0.580 3.420 11 O -0.529 6.529 12 C -0.154 4.154 13 C -0.203 4.203 14 S 0.174 5.826 15 C -0.198 4.198 16 C -0.035 4.035 17 O -0.542 6.542 18 Si 0.671 3.329 19 C -0.049 4.049 20 C -0.143 4.143 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.399 0.601 29 H 0.172 0.828 30 H 0.085 0.915 31 H 0.385 0.615 32 H -0.238 1.238 33 H -0.234 1.234 34 H 0.159 0.841 35 H 0.078 0.922 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 5.412 1.363 5.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.035 6.035 3 C -0.221 4.221 4 C -0.112 4.112 5 H 0.123 0.877 6 C -0.176 4.176 7 C 0.019 3.981 8 H 0.138 0.862 9 N -0.367 5.367 10 C 0.366 3.634 11 O -0.406 6.406 12 C -0.172 4.172 13 C -0.341 4.341 14 S 0.440 5.560 15 C -0.314 4.314 16 C -0.148 4.148 17 O -0.349 6.349 18 Si 0.570 3.430 19 C -0.078 4.078 20 C -0.182 4.182 21 H 0.121 0.879 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.234 0.766 29 H 0.189 0.811 30 H 0.103 0.897 31 H 0.233 0.767 32 H -0.162 1.162 33 H -0.158 1.158 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.153 5.488 1.812 6.168 hybrid contribution -0.869 -0.249 -1.136 1.452 sum -3.022 5.239 0.676 6.086 Atomic orbital electron populations 1.23398 0.94121 1.06760 1.04892 1.87092 1.07384 1.11005 1.98034 1.23382 0.99097 0.94735 1.04911 1.22104 0.92658 0.97426 0.99012 0.87666 1.23428 0.97758 0.96296 1.00100 1.22529 0.98579 0.87841 0.89146 0.86212 1.45812 1.14591 1.33567 1.42734 1.17614 0.82243 0.83392 0.80155 1.90824 1.42915 1.42815 1.64081 1.20260 0.94954 0.99314 1.02706 1.25782 1.03923 1.00476 1.03945 1.83167 1.04948 1.31479 1.36430 1.23429 0.98945 1.03722 1.05296 1.23995 0.96318 0.98774 0.95667 1.86523 1.56442 1.38452 1.53483 0.94699 0.86753 0.77234 0.84340 1.21041 0.97450 0.96106 0.93164 1.23553 0.98571 0.99719 0.96355 0.87929 0.90503 0.90461 0.90020 0.89779 0.89377 0.89999 0.76647 0.81105 0.89714 0.76663 1.16150 1.15782 0.82368 0.90276 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.21 16 2 S -0.26 -0.32 22.37 -107.50 -2.40 -2.72 16 3 C -0.07 0.08 5.78 37.16 0.21 0.30 16 4 C -0.09 0.11 3.65 -89.81 -0.33 -0.22 16 5 H 0.11 -0.04 8.13 -51.93 -0.42 -0.47 16 6 C -0.14 0.30 7.39 -25.92 -0.19 0.11 16 7 C 0.12 0.00 4.24 -67.12 -0.28 -0.28 16 8 H 0.12 0.21 7.46 -51.93 -0.39 -0.17 16 9 N -0.72 -0.13 5.32 -54.16 -0.29 -0.42 16 10 C 0.58 2.08 7.79 -12.62 -0.10 1.99 16 11 O -0.53 -3.93 16.40 5.24 0.09 -3.85 16 12 C -0.15 -0.39 5.98 -104.63 -0.63 -1.02 16 13 C -0.20 -0.03 10.38 29.93 0.31 0.28 16 14 S 0.17 0.15 20.18 -107.50 -2.17 -2.01 16 15 C -0.20 -0.41 5.72 -36.18 -0.21 -0.62 16 16 C -0.03 0.01 2.94 36.00 0.11 0.12 16 17 O -0.54 -0.08 12.82 -35.23 -0.45 -0.53 16 18 Si 0.67 -1.13 30.91 -169.99 -5.25 -6.39 16 19 C -0.05 -0.16 9.91 -39.02 -0.39 -0.55 16 20 C -0.14 0.03 7.43 -25.92 -0.19 -0.17 16 21 H 0.10 -0.14 8.14 -51.92 -0.42 -0.56 16 22 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 23 H 0.08 -0.13 8.14 -51.93 -0.42 -0.56 16 24 H 0.08 -0.14 7.85 -51.93 -0.41 -0.55 16 25 H 0.08 -0.15 8.14 -51.92 -0.42 -0.57 16 26 H 0.09 -0.30 8.08 -51.93 -0.42 -0.72 16 27 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.40 -1.04 7.22 -40.82 -0.29 -1.33 16 29 H 0.17 -0.55 7.01 -52.49 -0.37 -0.92 16 30 H 0.09 -0.17 7.96 -51.92 -0.41 -0.58 16 31 H 0.39 -1.97 8.74 45.56 0.40 -1.57 16 32 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 33 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 34 H 0.16 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.09 -0.05 7.90 -51.93 -0.41 -0.46 16 LS Contribution 331.45 15.07 4.99 4.99 Total: 0.00 -8.13 331.45 -10.97 -19.09 By element: Atomic # 1 Polarization: -4.43 SS G_CDS: -4.88 Total: -9.31 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.60 Total: 1.14 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.29 Total: -0.42 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: -0.37 Total: -4.37 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -5.25 Total: -6.39 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -4.57 Total: -4.74 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -8.13 -10.97 -19.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.199 kcal (2) G-P(sol) polarization free energy of solvation -8.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds