Wall clock time and date at job start Sun Mar 7 2021 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35455 * 125.56282 * 2 1 4 4 C 1.50700 * 126.06836 * 0.02736 * 3 2 1 5 5 O 1.42894 * 109.47445 * 244.91050 * 4 3 2 6 6 Si 1.86302 * 109.47136 * 124.90570 * 4 3 2 7 7 C 1.39840 * 107.86555 * 179.76903 * 3 2 1 8 8 C 1.50694 * 126.45478 * 180.22571 * 7 3 2 9 9 C 1.37873 * 107.08264 * 0.22179 * 7 3 2 10 10 C 1.46677 * 126.22941 * 179.97438 * 9 7 3 11 11 O 1.21689 * 120.00248 * 0.02562 * 10 9 7 12 12 N 1.34778 * 119.99942 * 180.02562 * 10 9 7 13 13 C 1.46499 * 120.00210 * 180.02562 * 12 10 9 14 14 H 1.08994 * 112.84557 * 23.80213 * 13 12 10 15 15 C 1.53773 * 113.61557 * 155.00451 * 13 12 10 16 16 C 1.53775 * 87.08334 * 89.11510 * 15 13 12 17 17 H 1.09000 * 113.61423 * 270.79848 * 16 15 13 18 18 C 1.53002 * 113.61468 * 139.98352 * 16 15 13 19 19 S 1.81401 * 109.47043 * 175.00194 * 18 16 15 20 20 C 1.81403 * 101.91949 * 179.97438 * 19 18 16 21 21 O 1.42100 * 108.57610 * 294.48067 * 19 18 16 22 22 O 1.42102 * 108.57995 * 65.50979 * 19 18 16 23 23 C 1.53775 * 87.08152 * 25.43136 * 16 15 13 24 24 N 1.35537 * 125.56902 * 180.15717 * 2 1 3 25 25 H 1.08998 * 109.46857 * 84.73777 * 1 2 3 26 26 H 1.09007 * 109.46590 * 204.73577 * 1 2 3 27 27 H 1.09000 * 109.47210 * 324.74060 * 1 2 3 28 28 H 1.09008 * 109.46963 * 4.90926 * 4 3 2 29 29 H 0.96708 * 113.99912 * 299.99599 * 5 4 3 30 30 H 1.48495 * 109.99984 * 58.68205 * 6 4 3 31 31 H 1.48501 * 109.99885 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47310 * 90.00059 * 8 7 3 33 33 H 1.09005 * 109.47164 * 209.99381 * 8 7 3 34 34 H 1.08998 * 109.47494 * 329.99705 * 8 7 3 35 35 H 0.97000 * 119.99647 * 0.02562 * 12 10 9 36 36 H 1.09008 * 113.61429 * 203.66687 * 15 13 12 37 37 H 1.09001 * 113.61483 * 334.47896 * 15 13 12 38 38 H 1.09002 * 109.46976 * 294.99597 * 18 16 15 39 39 H 1.08993 * 109.47430 * 54.99798 * 18 16 15 40 40 H 1.08997 * 109.47355 * 59.99817 * 20 19 18 41 41 H 1.09007 * 109.46828 * 180.02562 * 20 19 18 42 42 H 1.09005 * 109.46856 * 299.99706 * 20 19 18 43 43 H 1.09002 * 113.62098 * 220.01461 * 23 16 15 44 44 H 1.09008 * 113.61460 * 89.11949 * 23 16 15 45 45 H 0.97000 * 125.67161 * 0.05044 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8199 2.5321 0.0006 5 8 2.2115 3.1646 -1.2195 6 14 2.5787 3.4378 1.4410 7 6 3.6270 0.6768 0.0054 8 6 4.8485 1.5593 0.0121 9 6 3.6123 -0.7018 0.0034 10 6 4.7861 -1.5814 0.0070 11 8 5.9049 -1.1029 0.0126 12 7 4.6255 -2.9195 0.0040 13 6 5.7978 -3.7981 0.0081 14 1 6.6856 -3.3171 0.4184 15 6 5.5222 -5.1904 0.5998 16 6 5.1311 -5.6303 -0.8208 17 1 4.0763 -5.4790 -1.0499 18 6 5.6230 -7.0325 -1.1854 19 16 4.9785 -7.4941 -2.8170 20 6 5.6742 -9.1547 -3.0385 21 8 3.5643 -7.6031 -2.7307 22 8 5.5498 -6.6308 -3.7904 23 6 6.0430 -4.5043 -1.3358 24 7 2.2954 -1.1025 -0.0030 25 1 -0.3633 0.0943 -1.0233 26 1 -0.3633 -0.9335 0.4300 27 1 -0.3633 0.8391 0.5932 28 1 0.7337 2.5542 0.0890 29 1 3.1674 3.1815 -1.3646 30 1 4.0599 3.3876 1.3492 31 1 2.1176 4.8494 1.4532 32 1 5.1384 1.7707 1.0414 33 1 5.6666 1.0514 -0.4987 34 1 4.6242 2.4942 -0.5015 35 1 3.7336 -3.3009 -0.0008 36 1 6.4145 -5.6873 0.9808 37 1 4.6933 -5.2078 1.3075 38 1 6.7127 -7.0403 -1.2098 39 1 5.2712 -7.7461 -0.4405 40 1 5.3211 -9.8062 -2.2392 41 1 5.3575 -9.5558 -4.0013 42 1 6.7624 -9.0997 -3.0085 43 1 5.6337 -3.9680 -2.1920 44 1 7.0777 -4.8137 -1.4841 45 1 1.9835 -2.0209 -0.0062 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_12297754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:52:56 Heat of formation + Delta-G solvation = -73.946497 kcal Electronic energy + Delta-G solvation = -28255.103227 eV Core-core repulsion = 24174.990949 eV Total energy + Delta-G solvation = -4080.112278 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.133 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71829 -41.12978 -39.34275 -37.98310 -37.91548 -37.01560 -34.99784 -33.81617 -32.89717 -31.06023 -30.15236 -29.32344 -27.54969 -26.77245 -26.45401 -24.17701 -22.70859 -21.02880 -20.58179 -20.10074 -19.82675 -19.40142 -17.81893 -17.69871 -17.28039 -17.01311 -16.96146 -16.73772 -16.51992 -16.01875 -15.69050 -15.44337 -15.36649 -15.01790 -14.72036 -14.40157 -14.34185 -14.08322 -14.01303 -13.92368 -13.75097 -13.55470 -13.51077 -13.41864 -13.16881 -13.12889 -13.02439 -12.92932 -12.64356 -12.43937 -12.38292 -12.22530 -11.88615 -11.63781 -11.36683 -11.08625 -11.01121 -10.76220 -10.26226 -9.58971 -9.00367 -4.86532 -0.91417 0.31431 1.27935 1.54470 1.71836 1.88727 1.90771 2.04880 2.10836 2.22012 2.74254 3.10425 3.34485 3.42070 3.51429 3.60504 3.70741 3.78737 3.83753 3.93168 4.06093 4.08262 4.11108 4.18759 4.34784 4.38465 4.46313 4.49673 4.56275 4.67456 4.71873 4.77313 4.79051 4.81019 4.91561 4.96550 4.97518 4.98675 5.01228 5.08858 5.15173 5.26123 5.48611 5.67361 5.82834 6.32189 6.49201 6.50541 7.03718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.098 3.902 3 C -0.222 4.222 4 C -0.039 4.039 5 O -0.550 6.550 6 Si 0.739 3.261 7 C -0.079 4.079 8 C -0.094 4.094 9 C -0.076 4.076 10 C 0.590 3.410 11 O -0.563 6.563 12 N -0.704 5.704 13 C 0.109 3.891 14 H 0.095 0.905 15 C -0.110 4.110 16 C -0.111 4.111 17 H 0.099 0.901 18 C -0.583 4.583 19 S 2.408 3.592 20 C -0.645 4.645 21 O -0.991 6.991 22 O -0.989 6.989 23 C -0.160 4.160 24 N -0.522 5.522 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.377 0.623 30 H -0.269 1.269 31 H -0.302 1.302 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.408 0.592 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.164 0.836 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.126 0.874 42 H 0.152 0.848 43 H 0.055 0.945 44 H 0.111 0.889 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -9.007 6.360 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.021 4.021 3 C -0.228 4.228 4 C -0.149 4.149 5 O -0.359 6.359 6 Si 0.644 3.356 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.188 4.188 10 C 0.380 3.620 11 O -0.442 6.442 12 N -0.355 5.355 13 C 0.004 3.996 14 H 0.113 0.887 15 C -0.149 4.149 16 C -0.130 4.130 17 H 0.118 0.882 18 C -0.715 4.715 19 S 2.598 3.402 20 C -0.797 4.797 21 O -0.989 6.989 22 O -0.987 6.987 23 C -0.199 4.199 24 N -0.120 5.120 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.227 0.773 30 H -0.194 1.194 31 H -0.230 1.230 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.244 0.756 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.182 0.818 39 H 0.189 0.811 40 H 0.172 0.828 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.092 -7.679 5.947 9.935 hybrid contribution 0.790 -0.779 -1.001 1.494 sum -1.302 -8.457 4.946 9.883 Atomic orbital electron populations 1.20669 0.84791 1.05656 1.04330 1.20754 0.94918 0.84804 1.01672 1.19461 0.91973 0.95768 1.15607 1.24402 1.05363 0.90795 0.94365 1.86568 1.28944 1.80288 1.40053 0.94402 0.79603 0.77415 0.84177 1.19851 0.95036 0.91762 1.02171 1.20530 0.94862 0.97363 1.02285 1.19843 0.83670 0.93630 1.21625 1.17183 0.87262 0.82034 0.75558 1.90810 1.25674 1.75725 1.51979 1.45452 1.10177 1.04790 1.75108 1.21951 0.89189 0.90875 0.97609 0.88729 1.23316 1.04448 0.92310 0.94862 1.22391 1.00065 0.91190 0.99378 0.88235 1.30169 1.14549 1.05779 1.20959 1.07771 0.75293 0.78667 0.78509 1.30152 1.15213 1.21340 1.13027 1.93545 1.30439 1.87377 1.87497 1.93561 1.80102 1.65463 1.59547 1.23725 1.01804 0.97032 0.97299 1.41788 1.04223 1.09315 1.56668 0.89893 0.89021 0.87905 0.85326 0.77350 1.19386 1.23004 0.91125 0.91464 0.91877 0.75570 0.85896 0.88894 0.81821 0.81095 0.82808 0.85528 0.83000 0.92574 0.87099 0.72845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.81 9.97 71.24 0.71 1.52 16 2 C 0.10 -0.18 7.13 41.34 0.29 0.12 16 3 C -0.22 -0.57 4.66 -20.12 -0.09 -0.66 16 4 C -0.04 -0.07 2.86 71.24 0.20 0.13 16 5 O -0.55 -3.50 12.88 -148.98 -1.92 -5.42 16 6 Si 0.74 1.11 30.98 68.60 2.12 3.23 16 7 C -0.08 -0.50 5.82 -19.56 -0.11 -0.62 16 8 C -0.09 -0.72 7.72 71.23 0.55 -0.17 16 9 C -0.08 -0.34 7.06 40.35 0.28 -0.06 16 10 C 0.59 3.90 7.79 86.45 0.67 4.57 16 11 O -0.56 -8.06 14.40 -4.31 -0.06 -8.12 16 12 N -0.70 0.63 5.26 -444.02 -2.33 -1.71 16 13 C 0.11 -0.20 4.32 45.51 0.20 -0.01 16 14 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 15 C -0.11 1.01 7.39 31.12 0.23 1.24 16 16 C -0.11 0.76 3.53 -10.27 -0.04 0.73 16 17 H 0.10 -0.63 8.13 -2.39 -0.02 -0.65 16 18 C -0.58 7.01 5.64 71.98 0.41 7.41 16 19 S 2.41 -10.13 5.35 -56.49 -0.30 -10.43 16 20 C -0.65 7.36 10.62 113.37 1.20 8.56 16 21 O -0.99 -4.65 18.10 -127.37 -2.31 -6.96 16 22 O -0.99 -5.81 18.10 -127.37 -2.30 -8.12 16 23 C -0.16 0.26 7.43 31.12 0.23 0.50 16 24 N -0.52 1.40 5.99 -171.93 -1.03 0.37 16 25 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.09 -1.11 8.14 -2.38 -0.02 -1.13 16 27 H 0.10 -1.08 7.26 -2.39 -0.02 -1.10 16 28 H 0.13 -0.29 6.65 -2.38 -0.02 -0.30 16 29 H 0.38 1.19 6.58 -74.05 -0.49 0.70 16 30 H -0.27 -1.51 5.05 99.48 0.50 -1.01 16 31 H -0.30 -2.54 7.11 99.48 0.71 -1.83 16 32 H 0.07 0.56 7.16 -2.38 -0.02 0.55 16 33 H 0.07 0.77 6.48 -2.38 -0.02 0.75 16 34 H 0.06 0.30 5.08 -2.39 -0.01 0.29 16 35 H 0.41 -2.86 7.83 -92.71 -0.73 -3.59 16 36 H 0.12 -1.54 8.10 -2.38 -0.02 -1.56 16 37 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.16 -2.78 7.84 -2.39 -0.02 -2.80 16 39 H 0.17 -3.15 8.14 -2.39 -0.02 -3.17 16 40 H 0.15 -2.49 8.14 -2.39 -0.02 -2.51 16 41 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 42 H 0.15 -2.37 8.14 -2.39 -0.02 -2.39 16 43 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.11 -0.45 7.90 -2.38 -0.02 -0.47 16 45 H 0.43 -4.13 8.19 -92.71 -0.76 -4.89 16 Total: 0.00 -37.05 374.94 -4.48 -41.54 By element: Atomic # 1 Polarization: -26.57 SS G_CDS: -1.09 Total: -27.66 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 4.74 Total: 23.27 kcal Atomic # 7 Polarization: 2.03 SS G_CDS: -3.37 Total: -1.33 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -6.59 Total: -28.62 kcal Atomic # 14 Polarization: 1.11 SS G_CDS: 2.12 Total: 3.23 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -0.30 Total: -10.43 kcal Total: -37.05 -4.48 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_12297754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.409 kcal (2) G-P(sol) polarization free energy of solvation -37.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds