Wall clock time and date at job start Sun Mar 7 2021 05:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42099 * 108.58101 * 2 1 4 4 O 1.42103 * 108.57636 * 228.98053 * 2 1 3 5 5 C 1.81399 * 101.92486 * 114.49353 * 2 1 3 6 6 C 1.53006 * 109.47007 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.85166 * 43.80432 * 6 5 2 8 8 C 1.53784 * 113.61135 * 174.99807 * 6 5 2 9 9 C 1.53781 * 87.07913 * 139.98262 * 8 6 5 10 10 H 1.09003 * 113.60746 * 220.02045 * 9 8 6 11 11 N 1.46497 * 113.61720 * 89.11528 * 9 8 6 12 12 C 1.34774 * 119.99783 * 154.99829 * 11 9 8 13 13 O 1.21564 * 120.00438 * 359.97438 * 12 11 9 14 14 C 1.47726 * 119.99970 * 180.02562 * 12 11 9 15 15 C 1.39634 * 120.12020 * 179.97438 * 14 12 11 16 16 C 1.37851 * 119.87855 * 180.02562 * 15 14 12 17 17 C 1.50701 * 119.93988 * 180.02562 * 16 15 14 18 18 O 1.42902 * 109.47136 * 254.99774 * 17 16 15 19 19 Si 1.86303 * 109.47068 * 134.99999 * 17 16 15 20 20 C 1.38633 * 120.12185 * 0.02562 * 16 15 14 21 21 F 1.35105 * 119.88290 * 179.97438 * 20 16 15 22 22 C 1.38676 * 120.23866 * 359.97438 * 20 16 15 23 23 C 1.37821 * 120.11961 * 359.67895 * 22 20 16 24 24 C 1.53780 * 113.61185 * 272.49368 * 6 5 2 25 25 H 1.09004 * 109.46983 * 305.50407 * 1 2 3 26 26 H 1.08996 * 109.47688 * 65.51014 * 1 2 3 27 27 H 1.08996 * 109.46993 * 185.51158 * 1 2 3 28 28 H 1.08993 * 109.47659 * 59.99891 * 5 2 1 29 29 H 1.09000 * 109.46960 * 299.99686 * 5 2 1 30 30 H 1.09004 * 113.61147 * 254.52694 * 8 6 5 31 31 H 1.08995 * 113.61447 * 25.34685 * 8 6 5 32 32 H 0.97001 * 119.99838 * 335.00191 * 11 9 8 33 33 H 1.07995 * 120.06052 * 0.02562 * 15 14 12 34 34 H 1.08993 * 109.47327 * 15.00077 * 17 16 15 35 35 H 0.96706 * 113.99997 * 179.97438 * 18 17 16 36 36 H 1.48500 * 110.00025 * 60.00075 * 19 17 16 37 37 H 1.48499 * 109.99940 * 181.32000 * 19 17 16 38 38 H 1.08000 * 119.94281 * 179.97438 * 22 20 16 39 39 H 1.07996 * 120.06697 * 180.31505 * 23 22 20 40 40 H 1.08996 * 113.61507 * 334.56463 * 24 6 5 41 41 H 1.08996 * 113.61313 * 105.47850 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.7056 -0.8197 1.7977 7 1 4.2207 0.0877 1.4824 8 6 4.1319 -1.3184 3.1885 9 6 5.2285 -2.1273 2.4757 10 1 5.3773 -3.1232 2.8930 11 7 6.4818 -1.3894 2.3002 12 6 7.6455 -2.0578 2.1754 13 8 7.6552 -3.2729 2.2089 14 6 8.9094 -1.3137 1.9989 15 6 10.1165 -2.0036 1.8699 16 6 11.2931 -1.3042 1.7060 17 6 12.5966 -2.0474 1.5660 18 8 13.3372 -1.9437 2.7837 19 14 13.5867 -1.3075 0.1721 20 6 11.2794 0.0816 1.6696 21 9 12.4354 0.7622 1.5093 22 6 10.0834 0.7717 1.7973 23 6 8.9004 0.0823 1.9544 24 6 4.3236 -2.1094 1.2324 25 1 -0.3633 0.5969 0.8366 26 1 -0.3634 0.4260 -0.9351 27 1 -0.3633 -1.0229 0.0987 28 1 1.7612 -1.7371 1.6664 29 1 1.7611 -0.1173 2.4042 30 1 4.5204 -0.5310 3.8345 31 1 3.3808 -1.9369 3.6798 32 1 6.4741 -0.4198 2.2738 33 1 10.1283 -3.0831 1.8985 34 1 12.3952 -3.0969 1.3515 35 1 14.1895 -2.4002 2.7658 36 1 13.8679 0.1234 0.4525 37 1 14.8605 -2.0518 0.0030 38 1 10.0783 1.8514 1.7687 39 1 7.9689 0.6206 2.0487 40 1 3.6255 -2.9453 1.1883 41 1 4.8669 -1.9606 0.2992 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:54:25 Heat of formation + Delta-G solvation = -107.911803 kcal Electronic energy + Delta-G solvation = -27457.372753 eV Core-core repulsion = 23154.608661 eV Total energy + Delta-G solvation = -4302.764091 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -50.28051 -41.68061 -40.42593 -39.09034 -38.00551 -37.72636 -37.04203 -34.94857 -33.04186 -32.10073 -31.10167 -30.36164 -27.00420 -26.93270 -25.51422 -23.91200 -23.39145 -21.63864 -20.55576 -19.94766 -19.00078 -18.83113 -18.58051 -17.91371 -17.81345 -17.36688 -17.14534 -16.93438 -16.77520 -16.30178 -16.08520 -15.83664 -15.40654 -15.31570 -15.08518 -14.95722 -14.60851 -14.43682 -14.32684 -14.25914 -14.06150 -13.78218 -13.70762 -13.45121 -13.18152 -13.09378 -13.00447 -12.86081 -12.60273 -12.32909 -12.29070 -12.03408 -11.53176 -11.29800 -11.22265 -11.04648 -10.76542 -10.22883 -10.12976 -9.79187 -4.93694 -1.11988 -0.48847 -0.02222 1.22955 1.58863 1.62764 1.64799 1.91832 2.02947 2.51921 2.53945 2.86578 3.02189 3.14605 3.17200 3.21397 3.39661 3.49602 3.52796 3.58626 3.64611 3.70238 3.74246 3.86654 3.89251 4.08095 4.10157 4.19608 4.23871 4.50779 4.54407 4.55773 4.56426 4.67368 4.73521 4.77244 4.84019 4.90826 4.93383 4.98368 5.06014 5.42304 5.57488 6.33615 6.36137 7.09321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.418 3.582 3 O -0.940 6.940 4 O -0.933 6.933 5 C -0.602 4.602 6 C -0.107 4.107 7 H 0.104 0.896 8 C -0.130 4.130 9 C 0.120 3.880 10 H 0.111 0.889 11 N -0.711 5.711 12 C 0.567 3.433 13 O -0.527 6.527 14 C -0.149 4.149 15 C -0.009 4.009 16 C -0.115 4.115 17 C -0.074 4.074 18 O -0.533 6.533 19 Si 0.673 3.327 20 C 0.136 3.864 21 F -0.118 7.118 22 C -0.157 4.157 23 C -0.052 4.052 24 C -0.151 4.151 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.383 0.617 36 H -0.227 1.227 37 H -0.264 1.264 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.101 0.899 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 0.553 1.205 5.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.937 6.937 4 O -0.930 6.930 5 C -0.731 4.731 6 C -0.127 4.127 7 H 0.123 0.877 8 C -0.169 4.169 9 C 0.014 3.986 10 H 0.129 0.871 11 N -0.363 5.363 12 C 0.355 3.645 13 O -0.404 6.404 14 C -0.152 4.152 15 C -0.028 4.028 16 C -0.116 4.116 17 C -0.183 4.183 18 O -0.341 6.341 19 Si 0.572 3.428 20 C 0.116 3.884 21 F -0.096 7.096 22 C -0.176 4.176 23 C -0.071 4.071 24 C -0.190 4.190 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.237 0.763 33 H 0.168 0.832 34 H 0.100 0.900 35 H 0.231 0.769 36 H -0.151 1.151 37 H -0.189 1.189 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.428 0.743 0.503 4.518 hybrid contribution 0.048 -0.066 1.572 1.574 sum -4.380 0.677 2.075 4.894 Atomic orbital electron populations 1.30298 1.26881 1.11636 1.11988 1.07943 0.78308 0.75911 0.77831 1.93616 1.79065 1.34485 1.86511 1.93626 1.78818 1.66847 1.53733 1.30316 1.04981 1.14320 1.23447 1.22381 0.90783 0.99954 0.99545 0.87748 1.23351 0.97878 1.00249 0.95448 1.21834 0.82488 0.97376 0.96899 0.87059 1.45569 1.05991 1.10213 1.74519 1.18085 0.83214 0.87202 0.76025 1.90815 1.86841 1.13278 1.49473 1.19896 0.93832 0.93608 1.07848 1.21000 0.89076 1.01160 0.91523 1.19211 0.95278 0.91553 1.05556 1.24660 0.94352 1.03418 0.95904 1.86600 1.35399 1.78564 1.33526 0.95462 0.82261 0.81421 0.83663 1.17895 0.82211 0.89508 0.98740 1.91572 1.46184 1.79930 1.91908 1.21112 0.90748 1.01531 1.04169 1.21181 0.98152 0.92722 0.95050 1.23653 0.99113 0.97065 0.99126 0.85351 0.85124 0.85286 0.84598 0.84575 0.90092 0.87877 0.76268 0.83241 0.89986 0.76874 1.15062 1.18947 0.83463 0.84385 0.88048 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.27 10.62 101.05 1.07 4.34 16 2 S 2.42 -5.88 5.35 -107.50 -0.57 -6.45 16 3 O -0.94 -1.54 18.10 -57.83 -1.05 -2.58 16 4 O -0.93 -1.56 18.10 -57.83 -1.05 -2.61 16 5 C -0.60 3.08 5.64 37.16 0.21 3.29 16 6 C -0.11 0.35 3.53 -89.80 -0.32 0.03 16 7 H 0.10 -0.36 8.13 -51.93 -0.42 -0.78 16 8 C -0.13 0.50 7.39 -25.92 -0.19 0.31 16 9 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 10 H 0.11 -0.02 7.47 -51.93 -0.39 -0.41 16 11 N -0.71 0.95 5.21 -54.00 -0.28 0.66 16 12 C 0.57 0.87 7.77 -12.38 -0.10 0.77 16 13 O -0.53 -2.70 15.94 5.31 0.08 -2.61 16 14 C -0.15 -0.07 5.87 -104.96 -0.62 -0.68 16 15 C -0.01 -0.01 9.21 -39.20 -0.36 -0.37 16 16 C -0.11 -0.15 4.80 -104.62 -0.50 -0.66 16 17 C -0.07 -0.04 2.79 36.01 0.10 0.06 16 18 O -0.53 -0.96 12.86 -35.23 -0.45 -1.41 16 19 Si 0.67 0.05 30.77 -169.99 -5.23 -5.18 16 20 C 0.14 0.21 6.67 -39.27 -0.26 -0.06 16 21 F -0.12 -0.37 12.84 2.25 0.03 -0.34 16 22 C -0.16 0.11 10.01 -39.57 -0.40 -0.29 16 23 C -0.05 0.08 9.54 -39.20 -0.37 -0.29 16 24 C -0.15 0.26 7.43 -25.92 -0.19 0.07 16 25 H 0.13 -0.85 8.14 -51.92 -0.42 -1.27 16 26 H 0.13 -0.60 8.14 -51.93 -0.42 -1.02 16 27 H 0.13 -0.85 8.14 -51.93 -0.42 -1.27 16 28 H 0.14 -0.96 7.84 -51.93 -0.41 -1.37 16 29 H 0.14 -0.99 8.14 -51.92 -0.42 -1.41 16 30 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 31 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 32 H 0.40 -1.58 6.73 -40.82 -0.27 -1.85 16 33 H 0.15 0.13 7.58 -52.49 -0.40 -0.27 16 34 H 0.08 -0.11 7.77 -51.93 -0.40 -0.52 16 35 H 0.38 -0.84 8.74 45.56 0.40 -0.44 16 36 H -0.23 -0.69 5.33 56.52 0.30 -0.39 16 37 H -0.26 -0.53 7.11 56.52 0.40 -0.12 16 38 H 0.15 -0.39 8.06 -52.49 -0.42 -0.81 16 39 H 0.14 -0.67 6.40 -52.49 -0.34 -1.00 16 40 H 0.10 -0.27 7.89 -51.93 -0.41 -0.68 16 41 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 360.77 15.07 5.44 5.44 Total: 0.00 -14.16 360.77 -10.62 -24.78 By element: Atomic # 1 Polarization: -10.44 SS G_CDS: -5.32 Total: -15.76 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.22 Total: 6.06 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -0.28 Total: 0.66 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -2.46 Total: -9.21 kcal Atomic # 9 Polarization: -0.37 SS G_CDS: 0.03 Total: -0.34 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: -5.23 Total: -5.18 kcal Atomic # 16 Polarization: -5.88 SS G_CDS: -0.57 Total: -6.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -14.16 -10.62 -24.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.132 kcal (2) G-P(sol) polarization free energy of solvation -14.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds