Wall clock time and date at job start Sun Mar 7 2021 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57703 * 2 1 4 4 O 1.42100 * 108.57805 * 228.97360 * 2 1 3 5 5 C 1.81402 * 101.92149 * 114.48553 * 2 1 3 6 6 C 1.53006 * 109.46976 * 179.97438 * 5 2 1 7 7 H 1.09000 * 112.84872 * 43.80753 * 6 5 2 8 8 C 1.53781 * 113.61084 * 175.00206 * 6 5 2 9 9 C 1.53785 * 87.08030 * 139.98417 * 8 6 5 10 10 H 1.08994 * 113.61152 * 219.93496 * 9 8 6 11 11 N 1.46497 * 113.61016 * 89.11287 * 9 8 6 12 12 C 1.34781 * 119.99285 * 156.52872 * 11 9 8 13 13 O 1.21278 * 120.00452 * 0.02562 * 12 11 9 14 14 C 1.50707 * 119.99914 * 179.97438 * 12 11 9 15 15 C 1.50703 * 109.47133 * 185.68556 * 14 12 11 16 16 C 1.39319 * 120.05609 * 83.18455 * 15 14 12 17 17 C 1.48386 * 120.12365 * 0.02562 * 16 15 14 18 18 C 1.39332 * 120.12050 * 236.03741 * 17 16 15 19 19 C 1.38023 * 119.87893 * 180.02562 * 18 17 16 20 20 C 1.38323 * 120.11892 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.87597 * 179.97438 * 20 19 18 22 22 O 1.42900 * 109.46933 * 300.00516 * 21 20 19 23 23 Si 1.86300 * 109.47003 * 180.02562 * 21 20 19 24 24 C 1.38318 * 120.24475 * 0.26064 * 20 19 18 25 25 C 1.38023 * 120.12264 * 359.48634 * 24 20 19 26 26 C 1.39359 * 119.74937 * 179.72342 * 16 15 14 27 27 C 1.37991 * 119.88334 * 0.25742 * 26 16 15 28 28 C 1.38341 * 120.11848 * 359.97438 * 27 26 16 29 29 C 1.38033 * 120.06069 * 263.42054 * 15 14 12 30 30 C 1.53784 * 87.17047 * 334.52286 * 9 8 6 31 31 H 1.09002 * 109.47229 * 305.51202 * 1 2 3 32 32 H 1.08997 * 109.47417 * 65.51450 * 1 2 3 33 33 H 1.09005 * 109.47157 * 185.51329 * 1 2 3 34 34 H 1.08996 * 109.46811 * 60.00424 * 5 2 1 35 35 H 1.08998 * 109.47416 * 300.00283 * 5 2 1 36 36 H 1.08992 * 113.61853 * 25.42921 * 8 6 5 37 37 H 1.09009 * 113.60898 * 254.53019 * 8 6 5 38 38 H 0.96998 * 120.00857 * 336.53034 * 11 9 8 39 39 H 1.09002 * 109.46576 * 65.68629 * 14 12 11 40 40 H 1.08996 * 109.46798 * 305.68690 * 14 12 11 41 41 H 1.08004 * 120.06179 * 0.04955 * 18 17 16 42 42 H 1.07999 * 119.93907 * 179.97438 * 19 18 17 43 43 H 1.08994 * 109.47093 * 60.00497 * 21 20 19 44 44 H 0.96699 * 114.00381 * 299.99480 * 22 21 20 45 45 H 1.48500 * 110.00111 * 58.68269 * 23 21 20 46 46 H 1.48496 * 109.99900 * 180.02562 * 23 21 20 47 47 H 1.07995 * 119.94251 * 179.74209 * 24 20 19 48 48 H 1.07990 * 120.06329 * 180.25604 * 25 24 20 49 49 H 1.08004 * 120.05189 * 180.27624 * 26 16 15 50 50 H 1.08004 * 119.94328 * 180.02562 * 27 26 16 51 51 H 1.08006 * 119.87953 * 180.02562 * 28 27 26 52 52 H 1.08002 * 119.94661 * 0.02562 * 29 15 14 53 53 H 1.09001 * 113.61130 * 140.02163 * 30 9 8 54 54 H 1.08998 * 113.61479 * 270.92457 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7979 7 1 4.2206 0.0878 1.4825 8 6 4.1318 -1.3181 3.1888 9 6 5.2284 -2.1271 2.4761 10 1 5.3782 -3.1224 2.8944 11 7 6.4816 -1.3890 2.3006 12 6 7.6414 -2.0579 2.1451 13 8 7.6474 -3.2707 2.1499 14 6 8.9306 -1.2988 1.9640 15 6 10.0477 -2.2678 1.6739 16 6 10.2513 -2.7295 0.3752 17 6 9.3698 -2.2684 -0.7258 18 6 8.6814 -3.1956 -1.5053 19 6 7.8633 -2.7612 -2.5285 20 6 7.7257 -1.4081 -2.7804 21 6 6.8315 -0.9398 -3.8993 22 8 7.2976 -1.4777 -5.1384 23 14 6.8609 0.9212 -3.9805 24 6 8.4106 -0.4834 -2.0128 25 6 9.2273 -0.9064 -0.9837 26 6 11.2898 -3.6210 0.1131 27 6 12.1070 -4.0458 1.1406 28 6 11.8973 -3.5879 2.4291 29 6 10.8679 -2.7034 2.6951 30 6 4.3248 -2.1115 1.2318 31 1 -0.3634 0.5969 0.8365 32 1 -0.3634 0.4259 -0.9352 33 1 -0.3634 -1.0230 0.0987 34 1 1.7611 -1.7369 1.6664 35 1 1.7610 -0.1171 2.4043 36 1 3.3812 -1.9377 3.6795 37 1 4.5202 -0.5306 3.8348 38 1 6.4769 -0.4191 2.2964 39 1 9.1573 -0.7452 2.8752 40 1 8.8283 -0.6024 1.1317 41 1 8.7875 -4.2524 -1.3090 42 1 7.3296 -3.4791 -3.1336 43 1 5.8122 -1.2797 -3.7162 44 1 8.2002 -1.2160 -5.3661 45 1 8.2503 1.3981 -4.1983 46 1 5.9824 1.3956 -5.0796 47 1 8.3028 0.5717 -2.2163 48 1 9.7583 -0.1835 -0.3824 49 1 11.4548 -3.9786 -0.8926 50 1 12.9125 -4.7365 0.9385 51 1 12.5395 -3.9226 3.2303 52 1 10.7084 -2.3495 3.7029 53 1 4.8690 -1.9641 0.2989 54 1 3.6270 -2.9476 1.1884 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:55:07 Heat of formation + Delta-G solvation = -55.842652 kcal Electronic energy + Delta-G solvation = -38756.039899 eV Core-core repulsion = 33945.470252 eV Total energy + Delta-G solvation = -4810.569647 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.154 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.61769 -40.88273 -39.88502 -39.09324 -37.87828 -37.72352 -36.91285 -34.66400 -34.23318 -33.45481 -31.98534 -31.06796 -30.72111 -30.11753 -28.59884 -26.67633 -26.61262 -24.35065 -23.93501 -23.47469 -22.80347 -21.87909 -21.30845 -20.28130 -19.72196 -18.72246 -18.17230 -17.96646 -17.55205 -17.16427 -16.98494 -16.87540 -16.81866 -16.74226 -16.40454 -16.27415 -15.86803 -15.70205 -15.55768 -15.37770 -15.11435 -14.83416 -14.71782 -14.53440 -14.20336 -14.07890 -13.96271 -13.92093 -13.86956 -13.71222 -13.44386 -13.30049 -13.25167 -13.05860 -12.97786 -12.90852 -12.78115 -12.41109 -12.37109 -12.30760 -12.12147 -12.02087 -11.83623 -11.79381 -11.60765 -11.25343 -10.98232 -10.91105 -10.67263 -10.17572 -10.01406 -9.97143 -9.74157 -9.23224 -4.97601 -0.83530 -0.11643 0.34960 0.40980 0.60159 1.25231 1.53253 1.67226 1.90025 1.97303 2.19826 2.59465 2.81861 2.87977 3.18476 3.35682 3.45426 3.50617 3.51857 3.68114 3.71119 3.72224 3.83562 3.92068 3.93318 3.97890 4.05643 4.12519 4.16001 4.17798 4.25917 4.33168 4.36556 4.45491 4.47135 4.53634 4.56189 4.58725 4.59357 4.71105 4.80602 4.84541 4.87218 4.90248 4.97383 4.99615 5.01573 5.06354 5.08745 5.10830 5.23633 5.31176 5.38541 5.46142 5.53513 5.57901 5.64816 5.65831 5.90427 6.05295 6.44595 6.58832 7.31566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.409 3.591 3 O -0.983 6.983 4 O -0.983 6.983 5 C -0.587 4.587 6 C -0.107 4.107 7 H 0.108 0.892 8 C -0.113 4.113 9 C 0.111 3.889 10 H 0.082 0.918 11 N -0.704 5.704 12 C 0.518 3.482 13 O -0.574 6.574 14 C -0.112 4.112 15 C -0.062 4.062 16 C -0.052 4.052 17 C -0.041 4.041 18 C -0.113 4.113 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.088 4.088 22 O -0.548 6.548 23 Si 0.758 3.242 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.124 4.124 29 C -0.115 4.115 30 C -0.159 4.159 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.386 0.614 45 H -0.266 1.266 46 H -0.303 1.303 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.124 0.876 50 H 0.138 0.862 51 H 0.141 0.859 52 H 0.141 0.859 53 H 0.059 0.941 54 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.568 4.834 8.213 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.597 3.403 3 O -0.980 6.980 4 O -0.980 6.980 5 C -0.718 4.718 6 C -0.126 4.126 7 H 0.126 0.874 8 C -0.151 4.151 9 C 0.005 3.995 10 H 0.100 0.900 11 N -0.357 5.357 12 C 0.306 3.694 13 O -0.453 6.453 14 C -0.151 4.151 15 C -0.062 4.062 16 C -0.052 4.052 17 C -0.041 4.041 18 C -0.131 4.131 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.196 4.196 22 O -0.356 6.356 23 Si 0.662 3.338 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.142 4.142 29 C -0.133 4.133 30 C -0.198 4.198 31 H 0.170 0.830 32 H 0.145 0.855 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.187 0.813 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.254 0.746 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.235 0.765 45 H -0.192 1.192 46 H -0.231 1.231 47 H 0.168 0.832 48 H 0.172 0.828 49 H 0.142 0.858 50 H 0.156 0.844 51 H 0.159 0.841 52 H 0.158 0.842 53 H 0.078 0.922 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.388 4.719 7.046 9.132 hybrid contribution 0.176 -1.079 -0.698 1.297 sum -3.212 3.640 6.349 7.992 Atomic orbital electron populations 1.30197 1.23579 1.13500 1.12924 1.07795 0.79379 0.74639 0.78437 1.93556 1.80589 1.36421 1.87443 1.93568 1.80455 1.67435 1.56578 1.30196 1.04107 1.15927 1.21547 1.22436 0.91843 0.98893 0.99467 0.87433 1.23291 0.96775 1.00006 0.95076 1.21830 0.83492 0.96900 0.97297 0.89975 1.45592 1.05607 1.10794 1.73693 1.20880 0.85863 0.87861 0.74801 1.90723 1.87475 1.16040 1.51053 1.20990 0.89134 0.97770 1.07208 1.19462 0.96195 0.98255 0.92302 1.18725 0.95725 0.98141 0.92577 1.18872 0.96584 0.93797 0.94812 1.21253 0.97022 0.99440 0.95374 1.20972 0.98150 0.95694 0.96903 1.20358 0.99247 0.94016 0.98254 1.25280 0.99738 1.12085 0.82546 1.86570 1.36341 1.74405 1.38253 0.94111 0.79324 0.72829 0.87545 1.21156 0.96553 0.99661 0.95606 1.21385 0.98803 0.94433 0.97961 1.21336 0.95345 0.97334 0.99911 1.21351 0.99915 1.00196 0.93021 1.21487 0.98187 0.97233 0.97310 1.21237 0.95137 0.97734 0.99184 1.23721 0.99436 0.98499 0.98158 0.82958 0.85528 0.83314 0.82367 0.81295 0.86689 0.88699 0.74620 0.84693 0.85590 0.86776 0.86209 0.86818 0.76480 1.19176 1.23102 0.83166 0.82777 0.85791 0.84415 0.84123 0.84160 0.92212 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.18 10.62 113.37 1.20 8.38 16 2 S 2.41 -11.09 5.35 -56.49 -0.30 -11.39 16 3 O -0.98 -3.26 18.10 -127.37 -2.30 -5.56 16 4 O -0.98 -4.70 18.10 -127.37 -2.31 -7.01 16 5 C -0.59 6.87 5.64 71.98 0.41 7.27 16 6 C -0.11 0.76 3.55 -10.17 -0.04 0.73 16 7 H 0.11 -0.80 8.13 -2.39 -0.02 -0.82 16 8 C -0.11 1.00 7.38 31.12 0.23 1.23 16 9 C 0.11 -0.21 4.30 45.52 0.20 -0.02 16 10 H 0.08 0.25 7.50 -2.39 -0.02 0.23 16 11 N -0.70 1.92 5.26 -440.03 -2.32 -0.39 16 12 C 0.52 1.68 7.77 87.66 0.68 2.36 16 13 O -0.57 -7.63 15.67 -3.02 -0.05 -7.68 16 14 C -0.11 0.25 5.32 29.10 0.15 0.41 16 15 C -0.06 -0.21 4.38 -19.65 -0.09 -0.30 16 16 C -0.05 -0.30 5.40 -20.04 -0.11 -0.41 16 17 C -0.04 -0.20 4.88 -20.04 -0.10 -0.30 16 18 C -0.11 -0.85 9.62 22.48 0.22 -0.64 16 19 C -0.10 -0.68 9.59 22.24 0.21 -0.47 16 20 C -0.12 -0.48 5.39 -19.83 -0.11 -0.59 16 21 C -0.09 -0.37 2.82 71.24 0.20 -0.17 16 22 O -0.55 -3.62 12.76 -148.98 -1.90 -5.53 16 23 Si 0.76 1.15 29.78 68.60 2.04 3.20 16 24 C -0.11 -0.05 8.65 22.24 0.19 0.14 16 25 C -0.11 -0.05 7.77 22.48 0.17 0.12 16 26 C -0.12 -0.69 9.62 22.48 0.22 -0.48 16 27 C -0.13 -0.48 10.03 22.24 0.22 -0.25 16 28 C -0.12 -0.33 10.04 22.31 0.22 -0.11 16 29 C -0.12 -0.30 9.66 22.24 0.21 -0.08 16 30 C -0.16 0.23 7.45 31.21 0.23 0.46 16 31 H 0.15 -2.39 8.14 -2.39 -0.02 -2.41 16 32 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 33 H 0.15 -2.21 8.14 -2.39 -0.02 -2.23 16 34 H 0.16 -2.52 7.85 -2.39 -0.02 -2.54 16 35 H 0.17 -3.03 8.14 -2.39 -0.02 -3.05 16 36 H 0.11 -1.31 8.10 -2.39 -0.02 -1.33 16 37 H 0.09 -1.06 8.14 -2.38 -0.02 -1.08 16 38 H 0.42 -3.84 8.70 -92.71 -0.81 -4.64 16 39 H 0.14 -1.14 8.04 -2.39 -0.02 -1.16 16 40 H 0.13 -0.73 4.69 -2.39 -0.01 -0.74 16 41 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 42 H 0.12 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.11 0.59 7.96 -2.39 -0.02 0.57 16 44 H 0.39 0.14 8.70 -74.06 -0.64 -0.50 16 45 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 46 H -0.30 -2.86 7.11 99.48 0.71 -2.15 16 47 H 0.15 -0.66 4.86 -2.91 -0.01 -0.67 16 48 H 0.15 -0.75 7.09 -2.92 -0.02 -0.77 16 49 H 0.12 0.53 8.06 -2.91 -0.02 0.50 16 50 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16 51 H 0.14 -0.23 8.06 -2.91 -0.02 -0.26 16 52 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 53 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 54 H 0.10 -0.27 7.90 -2.39 -0.02 -0.29 16 Total: 0.00 -36.96 455.85 -3.06 -40.02 By element: Atomic # 1 Polarization: -22.47 SS G_CDS: -0.47 Total: -22.94 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 4.54 Total: 17.28 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: -2.32 Total: -0.39 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -6.56 Total: -25.78 kcal Atomic # 14 Polarization: 1.15 SS G_CDS: 2.04 Total: 3.20 kcal Atomic # 16 Polarization: -11.09 SS G_CDS: -0.30 Total: -11.39 kcal Total: -36.96 -3.06 -40.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.824 kcal (2) G-P(sol) polarization free energy of solvation -36.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds