Wall clock time and date at job start Sun Mar 7 2021 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38967 * 119.95901 * 2 1 4 4 O 1.35716 * 119.91204 * 0.02562 * 3 2 1 5 5 C 1.39020 * 120.18256 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95933 * 180.02562 * 5 3 2 7 7 O 1.42894 * 109.47188 * 75.00182 * 6 5 3 8 8 Si 1.86298 * 109.46950 * 195.00855 * 6 5 3 9 9 C 1.37679 * 120.08375 * 0.28545 * 5 3 2 10 10 C 1.39760 * 119.91299 * 359.46812 * 9 5 3 11 11 C 1.47601 * 120.08889 * 180.29717 * 10 9 5 12 12 O 1.21577 * 120.00156 * 0.20710 * 11 10 9 13 13 N 1.34775 * 119.99506 * 180.20972 * 11 10 9 14 14 C 1.46499 * 119.99524 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.85382 * 336.19188 * 14 13 11 16 16 C 1.53784 * 113.61665 * 107.49936 * 14 13 11 17 17 C 1.53785 * 87.08078 * 89.11653 * 16 14 13 18 18 H 1.09001 * 113.61360 * 270.88424 * 17 16 14 19 19 C 1.52995 * 113.69285 * 139.99274 * 17 16 14 20 20 S 1.81401 * 109.47143 * 87.46627 * 19 17 16 21 21 C 1.81397 * 101.92125 * 180.02562 * 20 19 17 22 22 O 1.42102 * 108.57655 * 294.48602 * 20 19 17 23 23 O 1.42092 * 108.58039 * 65.51333 * 20 19 17 24 24 C 1.53783 * 87.08166 * 25.43204 * 17 16 14 25 25 C 1.37725 * 119.95338 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47170 * 90.00061 * 1 2 3 27 27 H 1.09002 * 109.47306 * 210.00014 * 1 2 3 28 28 H 1.08998 * 109.47191 * 329.99534 * 1 2 3 29 29 H 0.96703 * 113.99672 * 269.97688 * 4 3 2 30 30 H 1.09006 * 109.46662 * 315.00451 * 6 5 3 31 31 H 0.96709 * 113.99337 * 60.00344 * 7 6 5 32 32 H 1.48506 * 109.99834 * 180.02562 * 8 6 5 33 33 H 1.48502 * 110.00011 * 301.31529 * 8 6 5 34 34 H 1.08001 * 120.04359 * 179.73723 * 9 5 3 35 35 H 0.97002 * 120.00733 * 359.97438 * 13 11 10 36 36 H 1.08997 * 113.61407 * 203.66051 * 16 14 13 37 37 H 1.08997 * 113.61412 * 334.57013 * 16 14 13 38 38 H 1.08997 * 109.47158 * 207.46250 * 19 17 16 39 39 H 1.09001 * 109.47303 * 327.46206 * 19 17 16 40 40 H 1.08999 * 109.47362 * 59.99971 * 21 20 19 41 41 H 1.09000 * 109.46907 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47240 * 299.99564 * 21 20 19 43 43 H 1.08996 * 113.61554 * 220.02191 * 24 17 16 44 44 H 1.09005 * 113.61142 * 89.11926 * 24 17 16 45 45 H 1.08002 * 120.04873 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2040 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5911 1.2094 0.0005 6 6 4.3386 2.5180 0.0011 7 8 4.2716 3.1042 1.3025 8 14 6.1199 2.2158 -0.4531 9 6 4.2859 0.0208 -0.0049 10 6 3.5918 -1.1923 0.0004 11 6 4.3328 -2.4688 0.0012 12 8 5.5486 -2.4660 0.0012 13 7 3.6615 -3.6375 0.0020 14 6 4.3970 -4.9045 0.0034 15 1 5.4044 -4.8097 -0.4017 16 6 4.3393 -5.6488 1.3479 17 6 3.0623 -6.3292 0.8268 18 1 2.1503 -5.7760 1.0509 19 6 2.9629 -7.8117 1.1919 20 16 2.1804 -7.9824 2.8195 21 6 2.1677 -9.7826 3.0422 22 8 3.0396 -7.4118 3.7970 23 8 0.8374 -7.5278 2.7261 24 6 3.6020 -6.0789 -0.5913 25 6 2.1946 -1.1933 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.3223 2.7183 -0.8828 30 1 3.8880 3.1940 -0.7256 31 1 4.6552 2.5561 2.0009 32 1 6.8681 3.4986 -0.4555 33 1 6.7368 1.2704 0.5118 34 1 5.3659 0.0258 -0.0087 35 1 2.6915 -3.6398 0.0023 36 1 5.1696 -6.3380 1.5014 37 1 4.1676 -4.9942 2.2023 38 1 2.3630 -8.3305 0.4442 39 1 3.9620 -8.2464 1.2216 40 1 3.1904 -10.1589 3.0177 41 1 1.7141 -10.0266 4.0028 42 1 1.5915 -10.2439 2.2402 43 1 2.8352 -5.7715 -1.3023 44 1 4.2308 -6.8857 -0.9679 45 1 1.6546 -2.1286 0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:55:33 Heat of formation + Delta-G solvation = -130.200212 kcal Electronic energy + Delta-G solvation = -29601.431335 eV Core-core repulsion = 25292.934910 eV Total energy + Delta-G solvation = -4308.496425 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.86758 -40.96259 -39.51530 -37.99375 -37.95390 -37.50706 -36.98617 -34.93292 -34.00005 -32.04193 -30.80177 -30.04429 -28.00856 -26.94815 -26.73280 -25.34405 -23.77340 -22.12434 -21.69901 -20.41273 -19.78810 -19.59804 -18.89403 -18.18275 -17.64929 -17.33625 -17.13332 -16.97150 -16.81120 -16.49214 -16.13741 -16.12834 -15.89408 -15.64669 -15.24967 -15.01585 -14.71290 -14.40017 -14.12278 -14.09594 -13.99246 -13.90548 -13.89554 -13.48328 -13.29814 -13.12326 -13.00099 -12.94075 -12.92318 -12.77777 -12.49925 -12.36084 -12.18962 -11.93859 -11.85260 -11.65042 -11.32260 -11.17861 -10.98517 -10.63866 -10.24058 -10.00169 -9.66637 -5.02909 -0.88546 -0.42127 0.04729 1.19445 1.51917 1.56741 1.85120 1.92697 1.96589 2.52826 2.77368 3.10286 3.13376 3.28880 3.38420 3.45920 3.50021 3.52154 3.65568 3.69868 3.79149 3.99701 4.09349 4.10965 4.14594 4.21748 4.34320 4.41462 4.45462 4.53610 4.60902 4.71014 4.75729 4.81292 4.81833 4.84478 4.97491 4.99687 5.02362 5.02858 5.06864 5.13998 5.19988 5.31001 5.51841 5.59538 6.37540 6.38009 6.75997 7.05654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.161 3.839 4 O -0.495 6.495 5 C -0.153 4.153 6 C -0.062 4.062 7 O -0.540 6.540 8 Si 0.752 3.248 9 C -0.064 4.064 10 C -0.152 4.152 11 C 0.561 3.439 12 O -0.575 6.575 13 N -0.698 5.698 14 C 0.106 3.894 15 H 0.095 0.905 16 C -0.161 4.161 17 C -0.112 4.112 18 H 0.101 0.899 19 C -0.583 4.583 20 S 2.409 3.591 21 C -0.646 4.646 22 O -0.990 6.990 23 O -0.991 6.991 24 C -0.110 4.110 25 C -0.056 4.056 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.414 0.586 30 H 0.134 0.866 31 H 0.382 0.618 32 H -0.291 1.291 33 H -0.297 1.297 34 H 0.132 0.868 35 H 0.414 0.586 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.171 0.829 39 H 0.164 0.836 40 H 0.151 0.849 41 H 0.125 0.875 42 H 0.153 0.847 43 H 0.095 0.905 44 H 0.123 0.877 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -7.608 -7.960 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C 0.115 3.885 4 O -0.309 6.309 5 C -0.154 4.154 6 C -0.172 4.172 7 O -0.348 6.348 8 Si 0.659 3.341 9 C -0.083 4.083 10 C -0.155 4.155 11 C 0.350 3.650 12 O -0.456 6.456 13 N -0.349 5.349 14 C 0.001 3.999 15 H 0.113 0.887 16 C -0.200 4.200 17 C -0.132 4.132 18 H 0.119 0.881 19 C -0.714 4.714 20 S 2.598 3.402 21 C -0.798 4.798 22 O -0.987 6.987 23 O -0.988 6.988 24 C -0.149 4.149 25 C -0.074 4.074 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.275 0.725 30 H 0.152 0.848 31 H 0.231 0.769 32 H -0.219 1.219 33 H -0.224 1.224 34 H 0.150 0.850 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.189 0.811 39 H 0.182 0.818 40 H 0.170 0.830 41 H 0.144 0.856 42 H 0.172 0.828 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.168 -6.470 -6.845 9.938 hybrid contribution -0.074 -0.368 0.764 0.852 sum -3.242 -6.838 -6.081 9.708 Atomic orbital electron populations 1.20772 0.88253 1.03965 1.03895 1.20446 0.98336 0.91732 1.01569 1.18422 0.88636 0.85881 0.95563 1.84738 1.75421 1.35521 1.35265 1.20520 0.94166 0.95431 1.05253 1.24923 1.10064 0.93930 0.88277 1.86613 1.82923 1.48166 1.17086 0.94199 0.73095 0.77106 0.89706 1.21115 1.00413 0.90965 0.95831 1.19786 0.94327 0.92584 1.08849 1.18385 0.86805 0.84533 0.75288 1.90784 1.15168 1.88070 1.51544 1.45516 1.10811 1.04505 1.74096 1.21987 0.97486 0.82817 0.97633 0.88728 1.23732 0.98883 1.00027 0.97332 1.22413 0.98789 0.92511 0.99445 0.88083 1.30162 1.16365 1.04007 1.20861 1.07769 0.74545 0.79391 0.78521 1.30154 1.13659 1.22979 1.12991 1.93559 1.68690 1.77068 1.59371 1.93546 1.37055 1.80729 1.87480 1.23319 0.99892 0.96774 0.94894 1.21363 0.91676 0.99083 0.95323 0.89148 0.90026 0.91242 0.72548 0.84814 0.76896 1.21884 1.22442 0.85008 0.74770 0.87155 0.92492 0.81075 0.81849 0.83044 0.85593 0.82827 0.88687 0.85906 0.82255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.62 9.78 71.23 0.70 1.31 16 2 C -0.12 0.19 5.89 -19.81 -0.12 0.08 16 3 C 0.16 0.13 6.66 22.63 0.15 0.28 16 4 O -0.50 0.29 11.84 -90.37 -1.07 -0.78 16 5 C -0.15 -0.34 5.27 -19.81 -0.10 -0.44 16 6 C -0.06 -0.11 2.37 71.24 0.17 0.06 16 7 O -0.54 -3.28 12.88 -148.98 -1.92 -5.20 16 8 Si 0.75 1.81 30.23 68.60 2.07 3.89 16 9 C -0.06 -0.29 8.20 22.51 0.18 -0.10 16 10 C -0.15 -0.46 5.88 -20.08 -0.12 -0.58 16 11 C 0.56 3.27 7.76 86.71 0.67 3.94 16 12 O -0.58 -8.13 15.94 -3.96 -0.06 -8.19 16 13 N -0.70 0.81 5.21 -443.14 -2.31 -1.50 16 14 C 0.11 -0.23 4.32 45.52 0.20 -0.03 16 15 H 0.09 0.14 7.46 -2.39 -0.02 0.12 16 16 C -0.16 0.29 7.43 31.12 0.23 0.52 16 17 C -0.11 0.78 3.53 -10.27 -0.04 0.75 16 18 H 0.10 -0.65 8.13 -2.39 -0.02 -0.67 16 19 C -0.58 7.05 5.64 71.98 0.41 7.46 16 20 S 2.41 -10.11 5.35 -56.49 -0.30 -10.41 16 21 C -0.65 7.32 10.62 113.37 1.20 8.52 16 22 O -0.99 -5.79 18.10 -127.37 -2.30 -8.10 16 23 O -0.99 -4.70 18.10 -127.37 -2.30 -7.00 16 24 C -0.11 1.04 7.39 31.12 0.23 1.27 16 25 C -0.06 0.13 9.18 22.51 0.21 0.34 16 26 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H 0.08 -0.59 8.08 -2.39 -0.02 -0.61 16 28 H 0.07 -0.22 7.52 -2.39 -0.02 -0.23 16 29 H 0.41 -4.19 9.06 -74.06 -0.67 -4.86 16 30 H 0.13 -0.27 7.82 -2.38 -0.02 -0.29 16 31 H 0.38 0.67 8.70 -74.05 -0.64 0.02 16 32 H -0.29 -2.49 7.11 99.48 0.71 -1.78 16 33 H -0.30 -2.71 6.69 99.48 0.67 -2.04 16 34 H 0.13 0.88 4.43 -2.91 -0.01 0.87 16 35 H 0.41 -2.94 6.72 -92.71 -0.62 -3.57 16 36 H 0.11 -0.46 7.90 -2.39 -0.02 -0.48 16 37 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.17 -3.17 8.14 -2.39 -0.02 -3.19 16 39 H 0.16 -2.79 7.85 -2.39 -0.02 -2.81 16 40 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 41 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 43 H 0.09 -1.10 8.14 -2.39 -0.02 -1.11 16 44 H 0.12 -1.58 8.10 -2.38 -0.02 -1.60 16 45 H 0.16 -1.41 6.39 -2.91 -0.02 -1.43 16 Total: 0.00 -39.17 386.54 -5.11 -44.28 By element: Atomic # 1 Polarization: -29.46 SS G_CDS: -0.88 Total: -30.35 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 3.97 Total: 23.37 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -2.31 Total: -1.50 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -7.66 Total: -29.28 kcal Atomic # 14 Polarization: 1.81 SS G_CDS: 2.07 Total: 3.89 kcal Atomic # 16 Polarization: -10.11 SS G_CDS: -0.30 Total: -10.41 kcal Total: -39.17 -5.11 -44.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.918 kcal (2) G-P(sol) polarization free energy of solvation -39.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds