Wall clock time and date at job start Sun Mar 7 2021 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99935 * 2 1 4 4 C 1.39046 * 110.99825 * 123.94751 * 2 1 3 5 5 C 1.39201 * 119.92731 * 120.00077 * 4 2 1 6 6 C 1.50698 * 119.96458 * 0.05038 * 5 4 2 7 7 O 1.42901 * 109.47305 * 284.97314 * 6 5 4 8 8 Si 1.86307 * 109.47275 * 164.97537 * 6 5 4 9 9 C 1.37630 * 120.06921 * 180.02562 * 5 4 2 10 10 C 1.39768 * 119.93089 * 0.02562 * 9 5 4 11 11 C 1.47525 * 120.07142 * 179.97438 * 10 9 5 12 12 O 1.21595 * 119.99815 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00213 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99872 * 179.97438 * 13 11 10 15 15 H 1.08996 * 112.90545 * 336.25291 * 14 13 11 16 16 C 1.53786 * 113.61220 * 107.50511 * 14 13 11 17 17 C 1.53783 * 87.07879 * 89.11339 * 16 14 13 18 18 H 1.08995 * 113.69233 * 270.87078 * 17 16 14 19 19 C 1.53006 * 113.61172 * 139.97819 * 17 16 14 20 20 S 1.81399 * 109.47007 * 87.50003 * 19 17 16 21 21 C 1.81395 * 101.92486 * 179.97438 * 20 19 17 22 22 O 1.42099 * 108.58176 * 294.49242 * 20 19 17 23 23 O 1.42103 * 108.57754 * 65.51332 * 20 19 17 24 24 C 1.53781 * 87.08349 * 25.43091 * 17 16 14 25 25 C 1.39820 * 119.86304 * 0.25880 * 10 9 5 26 26 C 1.37591 * 119.92746 * 359.48374 * 25 10 9 27 27 H 1.08997 * 109.47279 * 296.04997 * 1 2 3 28 28 H 1.09008 * 109.46894 * 56.04726 * 1 2 3 29 29 H 1.08999 * 109.46683 * 176.04283 * 1 2 3 30 30 H 1.08992 * 109.47217 * 183.94607 * 3 2 1 31 31 H 1.08998 * 109.47194 * 303.95603 * 3 2 1 32 32 H 1.09008 * 109.46790 * 63.95127 * 3 2 1 33 33 H 1.08998 * 109.47684 * 44.97468 * 6 5 4 34 34 H 0.96701 * 113.99917 * 59.99596 * 7 6 5 35 35 H 1.48498 * 110.00122 * 178.67759 * 8 6 5 36 36 H 1.48500 * 110.00004 * 299.99931 * 8 6 5 37 37 H 1.08004 * 120.03382 * 180.02562 * 9 5 4 38 38 H 0.97004 * 119.99784 * 0.02562 * 13 11 10 39 39 H 1.08996 * 113.60998 * 334.56914 * 16 14 13 40 40 H 1.08996 * 113.60935 * 203.66504 * 16 14 13 41 41 H 1.08993 * 109.46955 * 207.50488 * 19 17 16 42 42 H 1.09000 * 109.47050 * 327.50316 * 19 17 16 43 43 H 1.09004 * 109.46983 * 59.99760 * 21 20 19 44 44 H 1.08996 * 109.47688 * 180.02562 * 21 20 19 45 45 H 1.08996 * 109.46993 * 300.00511 * 21 20 19 46 46 H 1.09007 * 113.61545 * 89.11497 * 24 17 16 47 47 H 1.09000 * 113.61816 * 220.01500 * 24 17 16 48 48 H 1.08002 * 120.03481 * 179.74895 * 25 10 9 49 49 H 1.07995 * 119.96480 * 180.25967 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9673 -0.7249 1.0769 5 6 2.7793 -1.8330 0.8520 6 6 3.1179 -2.2443 -0.5577 7 8 1.9833 -2.8745 -1.1556 8 14 4.5482 -3.4378 -0.5298 9 6 3.2736 -2.5529 1.9157 10 6 2.9591 -2.1708 3.2228 11 6 3.4869 -2.9406 4.3653 12 8 4.1959 -3.9090 4.1703 13 7 3.1823 -2.5712 5.6251 14 6 3.7059 -3.3360 6.7596 15 1 3.9601 -4.3631 6.4977 16 6 4.8147 -2.6057 7.5356 17 6 3.6985 -1.9910 8.3966 18 1 3.3061 -1.0542 8.0013 19 6 4.0469 -1.9087 9.8842 20 16 4.9195 -0.3533 10.2156 21 6 5.2260 -0.4683 11.9998 22 8 6.1685 -0.3816 9.5384 23 8 4.0263 0.7263 9.9788 24 6 2.8477 -3.2186 8.0303 25 6 2.1384 -1.0609 3.4453 26 6 1.6516 -0.3421 2.3778 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3632 -1.0252 -0.0709 30 1 3.0827 1.3433 -0.0707 31 1 1.5898 1.9164 -0.8524 32 1 1.7043 1.8724 0.9234 33 1 3.3915 -1.3629 -1.1377 34 1 1.1996 -2.3100 -1.2035 35 1 4.8713 -3.8758 -1.9115 36 1 5.7346 -2.7945 0.0896 37 1 3.9040 -3.4123 1.7405 38 1 2.6157 -1.7993 5.7806 39 1 5.3573 -1.8741 6.9370 40 1 5.4741 -3.2748 8.0883 41 1 3.1312 -1.9445 10.4743 42 1 4.6865 -2.7489 10.1546 43 1 5.8307 -1.3509 12.2084 44 1 5.7555 0.4232 12.3357 45 1 4.2754 -0.5462 12.5274 46 1 2.9695 -4.0553 8.7182 47 1 1.8026 -2.9819 7.8310 48 1 1.8903 -0.7656 4.4541 49 1 1.0211 0.5178 2.5490 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:56:09 Heat of formation + Delta-G solvation = -68.319740 kcal Electronic energy + Delta-G solvation = -31591.966582 eV Core-core repulsion = 27228.334539 eV Total energy + Delta-G solvation = -4363.632043 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86738 -41.00141 -39.51962 -37.95248 -37.71208 -37.31019 -36.98539 -34.90628 -32.82742 -31.58484 -30.76960 -30.04602 -28.60376 -26.95439 -26.72177 -26.33232 -24.20307 -23.32445 -22.91889 -21.34878 -20.40961 -19.78908 -19.17110 -18.03786 -17.91621 -17.61167 -17.39964 -17.11063 -16.94927 -16.59299 -16.43726 -16.10800 -16.00554 -15.75044 -15.37416 -15.19644 -15.18476 -14.93468 -14.58231 -14.21123 -14.11387 -14.00034 -13.95573 -13.90342 -13.57511 -13.44224 -13.15838 -13.09598 -13.02629 -12.99157 -12.87171 -12.74539 -12.65157 -12.36695 -12.22008 -12.18080 -11.85070 -11.42970 -11.32152 -11.29852 -11.07759 -10.97213 -10.23111 -10.12211 -9.82237 -9.64490 -4.94028 -0.88483 -0.44125 0.11990 1.31564 1.52702 1.62907 1.84575 1.92855 1.98139 2.58931 2.70485 2.77359 3.13524 3.38720 3.46641 3.48070 3.56233 3.66396 3.68539 3.80542 3.89021 3.99855 4.09269 4.09552 4.11181 4.16592 4.21953 4.33352 4.37585 4.40076 4.43642 4.53792 4.56441 4.63138 4.70189 4.77132 4.82733 4.85405 4.91395 4.96668 4.98043 5.00121 5.00276 5.03713 5.10225 5.14946 5.18374 5.48060 5.55715 5.74194 6.17173 6.39399 6.63183 7.07678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.025 3.975 4 C 0.126 3.874 5 C -0.112 4.112 6 C -0.057 4.057 7 O -0.543 6.543 8 Si 0.773 3.227 9 C -0.058 4.058 10 C -0.147 4.147 11 C 0.560 3.440 12 O -0.570 6.570 13 N -0.698 5.698 14 C 0.107 3.893 15 H 0.096 0.904 16 C -0.160 4.160 17 C -0.112 4.112 18 H 0.101 0.899 19 C -0.583 4.583 20 S 2.409 3.591 21 C -0.646 4.646 22 O -0.989 6.989 23 O -0.992 6.992 24 C -0.111 4.111 25 C -0.061 4.061 26 C -0.152 4.152 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.374 0.626 35 H -0.285 1.285 36 H -0.276 1.276 37 H 0.138 0.862 38 H 0.413 0.587 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.151 0.849 44 H 0.126 0.874 45 H 0.153 0.847 46 H 0.123 0.877 47 H 0.093 0.907 48 H 0.159 0.841 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 0.922 7.783 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.249 5.249 3 C -0.121 4.121 4 C 0.032 3.968 5 C -0.114 4.114 6 C -0.167 4.167 7 O -0.350 6.350 8 Si 0.677 3.323 9 C -0.077 4.077 10 C -0.150 4.150 11 C 0.348 3.652 12 O -0.450 6.450 13 N -0.350 5.350 14 C 0.001 3.999 15 H 0.114 0.886 16 C -0.199 4.199 17 C -0.132 4.132 18 H 0.119 0.881 19 C -0.714 4.714 20 S 2.598 3.402 21 C -0.798 4.798 22 O -0.986 6.986 23 O -0.989 6.989 24 C -0.150 4.150 25 C -0.080 4.080 26 C -0.172 4.172 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.224 0.776 35 H -0.212 1.212 36 H -0.202 1.202 37 H 0.155 0.845 38 H 0.252 0.748 39 H 0.076 0.924 40 H 0.129 0.871 41 H 0.188 0.812 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.144 0.856 45 H 0.171 0.829 46 H 0.141 0.859 47 H 0.111 0.889 48 H 0.176 0.824 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.656 0.107 6.315 7.847 hybrid contribution -0.925 1.871 0.699 2.201 sum -5.582 1.978 7.014 9.179 Atomic orbital electron populations 1.22599 0.83865 1.03456 1.02415 1.59468 1.10026 1.15155 1.40223 1.22518 1.00664 0.86515 1.02372 1.18967 0.94808 0.93101 0.89946 1.20201 0.99407 0.95845 0.95924 1.25140 0.97605 1.03917 0.90019 1.86689 1.22669 1.43363 1.82285 0.92258 0.72950 0.86220 0.80893 1.21079 0.97240 0.98110 0.91289 1.19880 1.03198 0.99047 0.92915 1.18366 0.79621 0.83506 0.83672 1.90791 1.39121 1.29211 1.85859 1.45514 1.52199 1.32881 1.04413 1.21982 0.95986 0.96257 0.85649 0.88631 1.23728 0.96901 1.00557 0.98681 1.22414 0.98662 1.00519 0.91571 0.88129 1.30167 1.16235 1.20769 1.04253 1.07761 0.74966 0.78166 0.79300 1.30155 1.13866 1.13044 1.22734 1.93559 1.44157 1.87614 1.73270 1.93545 1.66885 1.53027 1.85424 1.23322 0.99110 0.97790 0.94777 1.21453 0.93585 0.92205 1.00742 1.21820 1.01767 1.01444 0.92170 0.93843 0.89334 0.90736 0.91999 0.89309 0.93802 0.90286 0.77644 1.21180 1.20220 0.84456 0.74843 0.92379 0.87097 0.81159 0.81817 0.83014 0.85581 0.82868 0.85926 0.88866 0.82391 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.12 9.20 127.69 1.18 1.05 16 2 N -0.53 0.95 3.67 -745.08 -2.73 -1.78 16 3 C 0.03 -0.09 9.38 127.69 1.20 1.11 16 4 C 0.13 0.08 4.66 38.47 0.18 0.26 16 5 C -0.11 -0.47 5.28 -19.78 -0.10 -0.57 16 6 C -0.06 -0.29 2.29 71.24 0.16 -0.12 16 7 O -0.54 -3.03 12.65 -148.98 -1.89 -4.92 16 8 Si 0.77 4.89 30.17 68.60 2.07 6.96 16 9 C -0.06 -0.33 8.19 22.50 0.18 -0.15 16 10 C -0.15 -0.50 5.88 -20.08 -0.12 -0.62 16 11 C 0.56 3.27 7.76 86.69 0.67 3.94 16 12 O -0.57 -7.81 15.94 -4.02 -0.06 -7.87 16 13 N -0.70 0.77 5.21 -443.20 -2.31 -1.54 16 14 C 0.11 -0.22 4.32 45.52 0.20 -0.03 16 15 H 0.10 0.14 7.46 -2.39 -0.02 0.12 16 16 C -0.16 0.32 7.43 31.12 0.23 0.55 16 17 C -0.11 0.78 3.53 -10.26 -0.04 0.74 16 18 H 0.10 -0.64 8.13 -2.39 -0.02 -0.66 16 19 C -0.58 7.02 5.64 71.98 0.41 7.43 16 20 S 2.41 -10.30 5.35 -56.49 -0.30 -10.60 16 21 C -0.65 7.35 10.62 113.37 1.20 8.55 16 22 O -0.99 -5.59 18.10 -127.37 -2.31 -7.89 16 23 O -0.99 -4.66 18.10 -127.37 -2.30 -6.96 16 24 C -0.11 1.02 7.39 31.12 0.23 1.25 16 25 C -0.06 0.16 9.53 22.50 0.21 0.37 16 26 C -0.15 0.39 8.53 22.36 0.19 0.58 16 27 H 0.04 -0.29 7.09 -2.39 -0.02 -0.31 16 28 H 0.09 -0.63 8.12 -2.38 -0.02 -0.65 16 29 H 0.07 -0.39 7.84 -2.39 -0.02 -0.41 16 30 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.09 -0.49 8.12 -2.39 -0.02 -0.51 16 32 H 0.04 -0.22 7.32 -2.38 -0.02 -0.24 16 33 H 0.08 0.39 7.77 -2.39 -0.02 0.37 16 34 H 0.37 0.41 8.06 -74.06 -0.60 -0.19 16 35 H -0.28 -3.27 7.11 99.48 0.71 -2.56 16 36 H -0.28 -2.82 7.11 99.48 0.71 -2.12 16 37 H 0.14 0.90 4.70 -2.91 -0.01 0.89 16 38 H 0.41 -2.90 6.72 -92.71 -0.62 -3.53 16 39 H 0.06 0.18 8.14 -2.39 -0.02 0.17 16 40 H 0.11 -0.49 7.90 -2.39 -0.02 -0.51 16 41 H 0.17 -3.12 8.14 -2.39 -0.02 -3.14 16 42 H 0.16 -2.79 7.84 -2.39 -0.02 -2.81 16 43 H 0.15 -2.37 8.14 -2.39 -0.02 -2.38 16 44 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 45 H 0.15 -2.46 8.14 -2.39 -0.02 -2.48 16 46 H 0.12 -1.54 8.10 -2.38 -0.02 -1.56 16 47 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 48 H 0.16 -1.47 6.39 -2.91 -0.02 -1.49 16 49 H 0.15 -1.02 6.99 -2.91 -0.02 -1.04 16 Total: 0.00 -33.64 408.58 -4.05 -37.69 By element: Atomic # 1 Polarization: -27.24 SS G_CDS: -0.20 Total: -27.44 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 5.99 Total: 24.35 kcal Atomic # 7 Polarization: 1.72 SS G_CDS: -5.04 Total: -3.32 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -6.56 Total: -27.64 kcal Atomic # 14 Polarization: 4.89 SS G_CDS: 2.07 Total: 6.96 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -0.30 Total: -10.60 kcal Total: -33.64 -4.05 -37.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.631 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds