Wall clock time and date at job start Sun Mar 7 2021 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42101 * 108.57514 * 2 1 4 4 O 1.42095 * 108.57994 * 228.97225 * 2 1 3 5 5 C 1.81400 * 101.91705 * 114.48337 * 2 1 3 6 6 C 1.53003 * 109.46805 * 180.02562 * 5 2 1 7 7 H 1.09002 * 112.85017 * 45.33274 * 6 5 2 8 8 C 1.53786 * 113.61503 * 176.52892 * 6 5 2 9 9 C 1.53783 * 87.08050 * 140.06140 * 8 6 5 10 10 H 1.09000 * 113.61254 * 219.93295 * 9 8 6 11 11 N 1.46503 * 113.61007 * 89.11544 * 9 8 6 12 12 C 1.34778 * 119.99418 * 154.99668 * 11 9 8 13 13 O 1.21277 * 120.00470 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99797 * 180.02562 * 12 11 9 15 15 C 1.50696 * 109.47498 * 180.02562 * 14 12 11 16 16 C 1.34844 * 125.89064 * 85.02315 * 15 14 12 17 17 C 1.40891 * 107.42006 * 180.02562 * 16 15 14 18 18 C 1.34855 * 107.41614 * 0.02562 * 17 16 15 19 19 C 1.50699 * 125.89104 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47122 * 120.02353 * 19 18 17 21 21 Si 1.86301 * 109.47019 * 0.02562 * 19 18 17 22 22 N 1.36344 * 108.21664 * 359.73830 * 18 17 16 23 23 C 1.53781 * 113.61337 * 274.13685 * 6 5 2 24 24 H 1.08995 * 109.47391 * 305.51883 * 1 2 3 25 25 H 1.08999 * 109.46649 * 65.51650 * 1 2 3 26 26 H 1.08999 * 109.46901 * 185.51330 * 1 2 3 27 27 H 1.08997 * 109.47283 * 60.00623 * 5 2 1 28 28 H 1.09004 * 109.47363 * 299.99794 * 5 2 1 29 29 H 1.08992 * 113.61675 * 254.61398 * 8 6 5 30 30 H 1.09000 * 113.60973 * 25.51686 * 8 6 5 31 31 H 0.96995 * 120.00321 * 335.00748 * 11 9 8 32 32 H 1.08994 * 109.47268 * 300.00654 * 14 12 11 33 33 H 1.09004 * 109.47346 * 60.00170 * 14 12 11 34 34 H 1.08001 * 126.29403 * 359.97438 * 16 15 14 35 35 H 1.08001 * 126.29671 * 180.02562 * 17 16 15 36 36 H 1.08998 * 109.46846 * 240.02422 * 19 18 17 37 37 H 0.96695 * 114.00178 * 300.00412 * 20 19 18 38 38 H 1.48504 * 109.99975 * 58.68566 * 21 19 18 39 39 H 1.48504 * 109.99564 * 179.97438 * 21 19 18 40 40 H 0.96995 * 125.63815 * 180.26505 * 22 18 17 41 41 H 1.08999 * 113.61567 * 334.48261 * 23 6 5 42 42 H 1.08998 * 113.61196 * 105.38615 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7986 7 1 4.2175 0.0991 1.5083 8 6 4.1313 -1.3520 3.1765 9 6 5.2337 -2.1358 2.4449 10 1 5.3878 -3.1412 2.8366 11 7 6.4835 -1.3868 2.2923 12 6 7.6510 -2.0455 2.1524 13 8 7.6669 -3.2582 2.1524 14 6 8.9367 -1.2751 1.9960 15 6 10.0866 -2.2393 1.8582 16 6 10.4989 -2.8193 0.7128 17 6 11.5962 -3.6445 1.0291 18 6 11.8122 -3.5378 2.3559 19 6 12.8885 -4.2481 3.1357 20 8 13.7403 -3.2844 3.7584 21 14 13.8931 -5.3107 1.9813 22 7 10.8922 -2.6724 2.8693 23 6 4.3300 -2.0888 1.1981 24 1 -0.3634 0.5970 0.8364 25 1 -0.3632 0.4259 -0.9353 26 1 -0.3633 -1.0229 0.0987 27 1 1.7611 -1.7369 1.6666 28 1 1.7610 -0.1169 2.4043 29 1 4.5140 -0.5804 3.8444 30 1 3.3829 -1.9886 3.6485 31 1 6.4707 -0.4169 2.2921 32 1 8.8792 -0.6491 1.1057 33 1 9.0925 -0.6463 2.8727 34 1 10.0669 -2.6779 -0.2669 35 1 12.1606 -4.2510 0.3363 36 1 12.4296 -4.8752 3.9000 37 1 14.1830 -2.6907 3.1367 38 1 14.4982 -4.4717 0.9159 39 1 14.9584 -6.0161 2.7381 40 1 10.8211 -2.4100 3.8004 41 1 3.6360 -2.9265 1.1302 42 1 4.8732 -1.9115 0.2698 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:56:33 Heat of formation + Delta-G solvation = -61.502696 kcal Electronic energy + Delta-G solvation = -25462.708153 eV Core-core repulsion = 21538.673098 eV Total energy + Delta-G solvation = -3924.035055 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.28382 -41.26597 -39.44239 -38.01105 -37.76447 -37.04631 -34.73006 -33.12117 -31.83596 -31.28034 -30.46940 -29.23254 -26.92212 -25.39605 -24.18032 -22.25343 -21.26734 -20.96768 -20.48303 -19.94793 -18.95606 -18.31803 -17.80496 -17.37274 -17.21112 -17.09216 -16.64854 -16.37969 -16.30698 -15.78501 -15.57001 -15.10247 -14.93442 -14.59843 -14.43474 -14.35144 -14.29426 -14.05430 -13.99422 -13.76282 -13.70116 -13.51916 -13.16922 -13.09500 -13.00919 -12.84351 -12.54940 -12.29874 -12.10106 -12.03338 -11.72968 -11.52156 -11.21302 -10.90759 -10.74670 -10.12481 -9.68927 -8.88104 -4.84004 -1.12411 1.16340 1.31274 1.60635 1.64401 1.72204 1.93028 1.97180 2.26168 2.51829 2.53516 2.86509 3.17834 3.22217 3.38612 3.41506 3.56469 3.64431 3.69881 3.73653 3.85626 3.88676 3.92981 4.02465 4.08585 4.23854 4.37000 4.50898 4.51078 4.55173 4.55567 4.62402 4.70594 4.78280 4.85211 4.92980 4.96644 5.34775 5.38793 5.47939 6.06593 6.22118 6.39636 6.40932 6.68539 7.19966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.940 6.940 4 O -0.933 6.933 5 C -0.602 4.602 6 C -0.107 4.107 7 H 0.105 0.895 8 C -0.130 4.130 9 C 0.120 3.880 10 H 0.108 0.892 11 N -0.718 5.718 12 C 0.515 3.485 13 O -0.518 6.518 14 C -0.072 4.072 15 C 0.036 3.964 16 C -0.172 4.172 17 C -0.186 4.186 18 C -0.009 4.009 19 C -0.056 4.056 20 O -0.538 6.538 21 Si 0.715 3.285 22 N -0.536 5.536 23 C -0.151 4.151 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.378 0.622 38 H -0.257 1.257 39 H -0.258 1.258 40 H 0.412 0.588 41 H 0.100 0.900 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 1.785 2.558 5.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.599 3.401 3 O -0.937 6.937 4 O -0.930 6.930 5 C -0.731 4.731 6 C -0.126 4.126 7 H 0.123 0.877 8 C -0.169 4.169 9 C 0.014 3.986 10 H 0.126 0.874 11 N -0.371 5.371 12 C 0.300 3.700 13 O -0.392 6.392 14 C -0.113 4.113 15 C -0.078 4.078 16 C -0.197 4.197 17 C -0.211 4.211 18 C -0.122 4.122 19 C -0.165 4.165 20 O -0.344 6.344 21 Si 0.615 3.385 22 N -0.131 5.131 23 C -0.190 4.190 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.226 0.774 38 H -0.181 1.181 39 H -0.183 1.183 40 H 0.249 0.751 41 H 0.118 0.882 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.770 0.770 2.247 4.456 hybrid contribution -0.667 1.611 1.249 2.145 sum -4.438 2.381 3.496 6.131 Atomic orbital electron populations 1.30299 1.26840 1.11652 1.12005 1.07964 0.78342 0.75918 0.77859 1.93615 1.79081 1.34487 1.86523 1.93625 1.78818 1.66829 1.53750 1.30316 1.05073 1.14282 1.23396 1.22375 0.90678 1.00014 0.99529 0.87708 1.23338 0.97920 1.00184 0.95485 1.21846 0.82849 0.97237 0.96634 0.87378 1.45697 1.05987 1.10096 1.75276 1.20614 0.84792 0.88559 0.76007 1.90772 1.86738 1.13776 1.47934 1.20133 0.88942 0.96559 1.05672 1.19461 0.96228 1.03642 0.88454 1.20602 0.99785 1.01822 0.97470 1.20654 1.01838 1.04917 0.93685 1.20771 0.96964 1.00222 0.94240 1.24788 0.92376 0.95452 1.03910 1.86571 1.62474 1.48252 1.37111 0.94216 0.81515 0.84401 0.78385 1.41780 1.25365 1.36180 1.09731 1.23691 0.99127 0.97171 0.99015 0.85337 0.85102 0.85265 0.84627 0.84603 0.90190 0.88059 0.76351 0.86366 0.88176 0.84519 0.84079 0.86734 0.77435 1.18099 1.18300 0.75123 0.88195 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.12 10.62 101.05 1.07 4.20 16 2 S 2.42 -5.07 5.36 -107.50 -0.58 -5.65 16 3 O -0.94 -1.84 18.10 -57.83 -1.05 -2.89 16 4 O -0.93 -1.87 18.10 -57.83 -1.05 -2.92 16 5 C -0.60 2.90 5.63 37.16 0.21 3.11 16 6 C -0.11 0.32 3.52 -89.80 -0.32 0.01 16 7 H 0.10 -0.33 8.14 -51.93 -0.42 -0.76 16 8 C -0.13 0.47 7.39 -25.92 -0.19 0.28 16 9 C 0.12 -0.17 4.33 -66.97 -0.29 -0.46 16 10 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 11 N -0.72 1.30 5.26 -52.88 -0.28 1.02 16 12 C 0.51 0.38 7.82 -10.98 -0.09 0.29 16 13 O -0.52 -2.76 15.63 5.56 0.09 -2.67 16 14 C -0.07 0.12 6.24 -29.04 -0.18 -0.07 16 15 C 0.04 0.05 5.66 -81.79 -0.46 -0.41 16 16 C -0.17 -0.44 10.76 -39.78 -0.43 -0.87 16 17 C -0.19 -0.41 9.37 -39.78 -0.37 -0.79 16 18 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 19 C -0.06 -0.04 3.08 36.01 0.11 0.07 16 20 O -0.54 -0.85 12.88 -35.23 -0.45 -1.30 16 21 Si 0.72 -0.11 30.58 -169.99 -5.20 -5.31 16 22 N -0.54 -0.71 6.08 -5.44 -0.03 -0.74 16 23 C -0.15 0.21 7.45 -25.78 -0.19 0.01 16 24 H 0.13 -0.82 8.14 -51.93 -0.42 -1.25 16 25 H 0.13 -0.58 8.14 -51.92 -0.42 -1.00 16 26 H 0.13 -0.82 8.14 -51.92 -0.42 -1.25 16 27 H 0.14 -0.91 7.88 -51.93 -0.41 -1.32 16 28 H 0.14 -0.95 8.14 -51.92 -0.42 -1.37 16 29 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.10 -0.46 8.10 -51.93 -0.42 -0.88 16 31 H 0.40 -1.81 8.70 -40.82 -0.36 -2.17 16 32 H 0.12 -0.42 8.14 -51.93 -0.42 -0.84 16 33 H 0.10 -0.40 8.14 -51.93 -0.42 -0.82 16 34 H 0.14 0.21 8.06 -52.49 -0.42 -0.22 16 35 H 0.14 0.08 6.22 -52.49 -0.33 -0.25 16 36 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16 37 H 0.38 -0.40 8.70 45.56 0.40 0.00 16 38 H -0.26 -0.47 7.11 56.52 0.40 -0.06 16 39 H -0.26 -0.70 7.11 56.52 0.40 -0.30 16 40 H 0.41 -0.13 8.96 -40.82 -0.37 -0.50 16 41 H 0.10 -0.21 7.92 -51.93 -0.41 -0.62 16 42 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 367.81 15.07 5.54 5.54 Total: 0.00 -14.81 367.81 -10.78 -25.59 By element: Atomic # 1 Polarization: -9.39 SS G_CDS: -6.12 Total: -15.51 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -1.66 Total: 4.83 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -0.31 Total: 0.28 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -2.46 Total: -9.78 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: -5.20 Total: -5.31 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -0.58 Total: -5.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -14.81 -10.78 -25.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.909 kcal (2) G-P(sol) polarization free energy of solvation -14.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds