Wall clock time and date at job start Sun Mar 7 2021 05:57:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81401 * 1
3 3 O 1.42105 * 108.57744 * 2 1
4 4 O 1.42100 * 108.58042 * 228.97133 * 2 1 3
5 5 C 1.81405 * 101.91965 * 114.48310 * 2 1 3
6 6 C 1.52995 * 109.46861 * 180.02562 * 5 2 1
7 7 H 1.08998 * 112.85321 * 43.80845 * 6 5 2
8 8 C 1.53781 * 113.61203 * 174.99998 * 6 5 2
9 9 C 1.53782 * 87.08045 * 140.06518 * 8 6 5
10 10 H 1.09006 * 113.61404 * 219.93576 * 9 8 6
11 11 N 1.46500 * 113.61597 * 89.11695 * 9 8 6
12 12 C 1.34782 * 120.00085 * 154.99932 * 11 9 8
13 13 O 1.21277 * 119.99690 * 359.97438 * 12 11 9
14 14 C 1.50694 * 119.99926 * 180.02562 * 12 11 9
15 15 O 1.42901 * 109.46937 * 180.02562 * 14 12 11
16 16 C 1.35905 * 116.99604 * 180.02562 * 15 14 12
17 17 C 1.38719 * 120.05115 * 180.02562 * 16 15 14
18 18 N 1.47999 * 120.02852 * 0.02562 * 17 16 15
19 19 O 1.21799 * 119.99970 * 180.02562 * 18 17 16
20 20 O 1.21806 * 120.00142 * 0.02562 * 18 17 16
21 21 C 1.38169 * 119.93949 * 180.02562 * 17 16 15
22 22 C 1.38233 * 120.05807 * 0.02562 * 21 17 16
23 23 C 1.50706 * 119.94583 * 180.02562 * 22 21 17
24 24 O 1.42900 * 109.46639 * 299.99694 * 23 22 21
25 25 Si 1.86297 * 109.47330 * 179.97438 * 23 22 21
26 26 C 1.38291 * 120.11365 * 359.97411 * 22 21 17
27 27 C 1.38126 * 120.05336 * 359.72610 * 26 22 21
28 28 C 1.53775 * 87.08035 * 334.56539 * 9 8 6
29 29 H 1.09009 * 109.47052 * 305.51984 * 1 2 3
30 30 H 1.09004 * 109.46796 * 65.51355 * 1 2 3
31 31 H 1.08991 * 109.47150 * 185.51658 * 1 2 3
32 32 H 1.08993 * 109.47022 * 59.99870 * 5 2 1
33 33 H 1.09003 * 109.47290 * 300.00020 * 5 2 1
34 34 H 1.08998 * 113.61863 * 25.51463 * 8 6 5
35 35 H 1.08996 * 113.61650 * 254.61263 * 8 6 5
36 36 H 0.96995 * 119.99981 * 335.00488 * 11 9 8
37 37 H 1.08999 * 109.47314 * 60.00033 * 14 12 11
38 38 H 1.08998 * 109.47471 * 300.00068 * 14 12 11
39 39 H 1.08003 * 119.96632 * 179.97438 * 21 17 16
40 40 H 1.09002 * 109.47118 * 59.99475 * 23 22 21
41 41 H 0.96698 * 114.00115 * 299.99962 * 24 23 22
42 42 H 1.48501 * 110.00010 * 58.67790 * 25 23 22
43 43 H 1.48501 * 110.00199 * 180.02562 * 25 23 22
44 44 H 1.07998 * 119.97198 * 180.02562 * 26 22 21
45 45 H 1.08001 * 120.02840 * 180.29809 * 27 26 22
46 46 H 1.09005 * 113.61232 * 139.98129 * 28 9 8
47 47 H 1.08998 * 113.62104 * 270.88530 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 8 2.2667 1.3470 0.0000
4 8 2.2668 -0.8842 -1.0161
5 6 2.1887 -0.7356 1.6153
6 6 3.7054 -0.8183 1.7985
7 1 4.2199 0.0895 1.4835
8 6 4.1315 -1.3167 3.1895
9 6 5.2304 -2.1230 2.4773
10 1 5.3820 -3.1183 2.8952
11 7 6.4824 -1.3824 2.3033
12 6 7.6476 -2.0483 2.1792
13 8 7.6597 -3.2605 2.2121
14 6 8.9355 -1.2864 2.0007
15 8 10.0227 -2.2075 1.8926
16 6 11.2641 -1.6798 1.7268
17 6 12.3651 -2.5161 1.6142
18 7 12.1890 -3.9844 1.6740
19 8 13.1561 -4.7182 1.5756
20 8 11.0769 -4.4589 1.8217
21 6 13.6261 -1.9771 1.4461
22 6 13.7913 -0.6058 1.3907
23 6 15.1679 -0.0207 1.2068
24 8 16.0065 -0.4266 2.2903
25 14 15.0530 1.8384 1.1725
26 6 12.6953 0.2301 1.5027
27 6 11.4317 -0.3039 1.6646
28 6 4.3267 -2.1064 1.2333
29 1 -0.3634 0.5971 0.8365
30 1 -0.3633 0.4260 -0.9353
31 1 -0.3633 -1.0228 0.0988
32 1 1.7610 -1.7368 1.6666
33 1 1.7610 -0.1169 2.4043
34 1 3.3819 -1.9381 3.6793
35 1 4.5177 -0.5289 3.8362
36 1 6.4727 -0.4129 2.2774
37 1 9.0945 -0.6352 2.8602
38 1 8.8786 -0.6840 1.0941
39 1 14.4837 -2.6279 1.3589
40 1 15.5910 -0.3757 0.2671
41 1 15.6904 -0.1445 3.1595
42 1 14.4479 2.3333 2.4351
43 1 16.4039 2.4276 0.9909
44 1 12.8269 1.3011 1.4587
45 1 10.5755 0.3492 1.7472
46 1 4.8705 -1.9561 0.3006
47 1 3.6303 -2.9437 1.1881
There are 71 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 71
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16534690_4549638.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:57:46
Heat of formation + Delta-G solvation = -100.268952 kcal
Electronic energy + Delta-G solvation = -35091.288361 eV
Core-core repulsion = 29953.073417 eV
Total energy + Delta-G solvation = -5138.214943 eV
No. of doubly occupied orbitals = 71
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 401.116 amu
Computer time = 2.57 seconds
Orbital eigenvalues (eV)
-43.01832 -41.85301 -41.30915 -40.06571 -39.13135 -38.05130 -37.62574 -37.11861
-37.08719 -34.92328 -33.51218 -32.41800 -31.60003 -30.64570 -29.64527 -27.59186
-26.99088 -26.74403 -24.71008 -23.90892 -22.83596 -22.14169 -20.66330 -20.44215
-19.99380 -19.45056 -19.21737 -18.60466 -18.34978 -18.33570 -17.88211 -17.69900
-17.46323 -17.23593 -17.07945 -16.97587 -16.54236 -16.35123 -15.99733 -15.87418
-15.69993 -15.35304 -15.13643 -14.94742 -14.48426 -14.37549 -14.32053 -14.13494
-14.02112 -13.84027 -13.70191 -13.30082 -13.24988 -13.14397 -13.05044 -12.70432
-12.55484 -12.54043 -12.36214 -12.19344 -12.08000 -12.01190 -11.84661 -11.72855
-11.59043 -11.27522 -11.02818 -10.97021 -10.89215 -10.29074 -9.91924 -5.21514
-1.16318 -1.12882 -0.38252 0.38480 0.53561 0.99717 1.05058 1.33313
1.35316 1.60261 1.75786 1.93093 2.13369 2.48361 2.82143 2.96951
3.00970 3.10868 3.15198 3.15831 3.21971 3.33780 3.37865 3.48988
3.52694 3.55779 3.62827 3.66960 3.69850 3.70948 3.83831 4.03319
4.14412 4.17634 4.18692 4.33881 4.43388 4.44976 4.50063 4.52815
4.61433 4.67635 4.69699 4.83854 4.88262 4.92543 5.31525 5.44142
5.70472 6.15718 6.18412 6.94259 6.97730
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.659 4.659
2 S 2.416 3.584
3 O -0.940 6.940
4 O -0.933 6.933
5 C -0.602 4.602
6 C -0.107 4.107
7 H 0.104 0.896
8 C -0.129 4.129
9 C 0.121 3.879
10 H 0.113 0.887
11 N -0.713 5.713
12 C 0.517 3.483
13 O -0.492 6.492
14 C 0.030 3.970
15 O -0.253 6.253
16 C 0.200 3.800
17 C -0.075 4.075
18 N 0.028 4.972
19 O -0.177 6.177
20 O -0.118 6.118
21 C 0.009 3.991
22 C -0.156 4.156
23 C -0.072 4.072
24 O -0.525 6.525
25 Si 0.688 3.312
26 C -0.024 4.024
27 C -0.209 4.209
28 C -0.151 4.151
29 H 0.128 0.872
30 H 0.131 0.869
31 H 0.129 0.871
32 H 0.136 0.864
33 H 0.136 0.864
34 H 0.104 0.896
35 H 0.081 0.919
36 H 0.403 0.597
37 H 0.103 0.897
38 H 0.104 0.896
39 H 0.164 0.836
40 H 0.126 0.874
41 H 0.378 0.622
42 H -0.256 1.256
43 H -0.250 1.250
44 H 0.149 0.851
45 H 0.157 0.843
46 H 0.084 0.916
47 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.154 9.598 2.099 11.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.808 4.808
2 S 2.599 3.401
3 O -0.938 6.938
4 O -0.930 6.930
5 C -0.731 4.731
6 C -0.127 4.127
7 H 0.123 0.877
8 C -0.168 4.168
9 C 0.016 3.984
10 H 0.131 0.869
11 N -0.367 5.367
12 C 0.301 3.699
13 O -0.363 6.363
14 C -0.048 4.048
15 O -0.163 6.163
16 C 0.150 3.850
17 C -0.160 4.160
18 N 0.548 4.452
19 O -0.386 6.386
20 O -0.342 6.342
21 C -0.010 4.010
22 C -0.157 4.157
23 C -0.182 4.182
24 O -0.331 6.331
25 Si 0.588 3.412
26 C -0.042 4.042
27 C -0.228 4.228
28 C -0.190 4.190
29 H 0.147 0.853
30 H 0.149 0.851
31 H 0.148 0.852
32 H 0.155 0.845
33 H 0.155 0.845
34 H 0.122 0.878
35 H 0.099 0.901
36 H 0.237 0.763
37 H 0.120 0.880
38 H 0.122 0.878
39 H 0.182 0.818
40 H 0.144 0.856
41 H 0.226 0.774
42 H -0.181 1.181
43 H -0.175 1.175
44 H 0.167 0.833
45 H 0.174 0.826
46 H 0.103 0.897
47 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -4.899 9.950 1.329 11.170
hybrid contribution -0.733 -0.333 1.698 1.879
sum -5.632 9.617 3.027 11.548
Atomic orbital electron populations
1.30295 1.26754 1.11700 1.12029 1.07976 0.78386 0.75912 0.77864
1.93614 1.79119 1.34484 1.86534 1.93629 1.78840 1.66814 1.53742
1.30313 1.04966 1.14387 1.23424 1.22381 0.90820 0.99928 0.99524
0.87741 1.23348 0.97790 1.00216 0.95434 1.21844 0.82181 0.97384
0.97001 0.86938 1.45456 1.05654 1.10190 1.75385 1.19813 0.84196
0.88418 0.77522 1.90871 1.86147 1.13136 1.46165 1.22724 0.85310
0.92232 1.04543 1.86502 1.11598 1.33376 1.84778 1.18695 0.84254
0.91479 0.90534 1.20586 0.94480 0.80478 1.20440 1.43338 1.00929
1.02561 0.98328 1.94557 1.32130 1.57114 1.54760 1.94699 1.10732
1.78296 1.50447 1.20837 0.94785 0.95697 0.89658 1.20255 0.96999
0.92443 1.06028 1.25073 0.87721 1.11666 0.93715 1.86658 1.50479
1.78648 1.17353 0.95150 0.84823 0.73384 0.87869 1.21267 0.91317
1.00503 0.91095 1.21273 0.99862 0.92069 1.09621 1.23659 0.99116
0.97169 0.99042 0.85313 0.85088 0.85229 0.84533 0.84533 0.87801
0.90062 0.76253 0.87962 0.87801 0.81805 0.85605 0.77428 1.18119
1.17495 0.83338 0.82563 0.89728 0.87940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.66 3.41 10.62 101.05 1.07 4.48 16
2 S 2.42 -6.48 5.35 -107.50 -0.58 -7.06 16
3 O -0.94 -1.18 18.10 -57.83 -1.05 -2.23 16
4 O -0.93 -1.40 18.10 -57.83 -1.05 -2.45 16
5 C -0.60 3.31 5.64 37.15 0.21 3.51 16
6 C -0.11 0.42 3.53 -89.81 -0.32 0.10 16
7 H 0.10 -0.45 8.13 -51.93 -0.42 -0.87 16
8 C -0.13 0.58 7.39 -25.92 -0.19 0.39 16
9 C 0.12 -0.27 4.32 -67.12 -0.29 -0.56 16
10 H 0.11 -0.04 7.46 -51.93 -0.39 -0.43 16
11 N -0.71 2.06 5.26 -53.02 -0.28 1.78 16
12 C 0.52 0.14 7.91 -10.99 -0.09 0.05 16
13 O -0.49 -2.86 16.10 -14.35 -0.23 -3.09 16
14 C 0.03 -0.08 5.22 36.00 0.19 0.11 16
15 O -0.25 -0.51 7.68 -49.80 -0.38 -0.90 16
16 C 0.20 0.12 6.67 -39.22 -0.26 -0.14 16
17 C -0.08 -0.20 6.87 -79.81 -0.55 -0.75 16
18 N 0.03 0.19 4.45 34.03 0.15 0.34 16
19 O -0.18 -1.29 18.45 -29.46 -0.54 -1.83 16
20 O -0.12 -1.01 17.24 -36.49 -0.63 -1.64 16
21 C 0.01 0.00 9.11 -39.61 -0.36 -0.36 16
22 C -0.16 0.33 5.39 -104.60 -0.56 -0.23 16
23 C -0.07 0.18 2.82 36.01 0.10 0.29 16
24 O -0.53 0.33 12.77 -35.23 -0.45 -0.12 16
25 Si 0.69 -2.51 29.78 -169.99 -5.06 -7.57 16
26 C -0.02 0.09 8.66 -39.60 -0.34 -0.25 16
27 C -0.21 0.71 9.04 -39.43 -0.36 0.35 16
28 C -0.15 0.32 7.43 -25.92 -0.19 0.13 16
29 H 0.13 -0.88 8.14 -51.92 -0.42 -1.31 16
30 H 0.13 -0.63 8.14 -51.92 -0.42 -1.05 16
31 H 0.13 -0.88 8.14 -51.93 -0.42 -1.30 16
32 H 0.14 -1.00 7.85 -51.93 -0.41 -1.41 16
33 H 0.14 -1.05 8.14 -51.92 -0.42 -1.47 16
34 H 0.10 -0.55 8.10 -51.93 -0.42 -0.97 16
35 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16
36 H 0.40 -2.51 8.70 -40.82 -0.36 -2.86 16
37 H 0.10 -0.62 7.67 -51.93 -0.40 -1.02 16
38 H 0.10 -0.61 7.65 -51.93 -0.40 -1.01 16
39 H 0.16 0.09 7.61 -52.48 -0.40 -0.31 16
40 H 0.13 -0.40 7.96 -51.93 -0.41 -0.81 16
41 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16
42 H -0.26 0.56 7.11 56.52 0.40 0.96 16
43 H -0.25 -0.05 7.11 56.52 0.40 0.35 16
44 H 0.15 -0.97 4.87 -52.49 -0.26 -1.23 16
45 H 0.16 -1.09 6.30 -52.49 -0.33 -1.43 16
46 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16
47 H 0.10 -0.29 7.90 -51.93 -0.41 -0.70 16
LS Contribution 415.89 15.07 6.27 6.27
Total: 0.00 -18.84 415.89 -11.70 -30.54
By element:
Atomic # 1 Polarization: -13.22 SS G_CDS: -5.94 Total: -19.16 kcal
Atomic # 6 Polarization: 9.06 SS G_CDS: -1.94 Total: 7.12 kcal
Atomic # 7 Polarization: 2.25 SS G_CDS: -0.13 Total: 2.12 kcal
Atomic # 8 Polarization: -7.93 SS G_CDS: -4.33 Total: -12.26 kcal
Atomic # 14 Polarization: -2.51 SS G_CDS: -5.06 Total: -7.57 kcal
Atomic # 16 Polarization: -6.48 SS G_CDS: -0.58 Total: -7.06 kcal
Total LS contribution 6.27 Total: 6.27 kcal
Total: -18.84 -11.70 -30.54 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534690_4549638.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.725 kcal
(2) G-P(sol) polarization free energy of solvation -18.842 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.703 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.57 seconds