Wall clock time and date at job start Sun Mar 7 2021 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37647 * 125.67402 * 2 1 4 4 C 1.46673 * 126.22055 * 359.97438 * 3 2 1 5 5 O 1.21690 * 120.00285 * 354.48467 * 4 3 2 6 6 N 1.34782 * 119.99408 * 174.47632 * 4 3 2 7 7 C 1.46498 * 119.99741 * 185.06610 * 6 4 3 8 8 H 1.09003 * 112.85156 * 334.67110 * 7 6 4 9 9 C 1.53783 * 113.61539 * 105.86441 * 7 6 4 10 10 C 1.54050 * 86.98493 * 89.16154 * 9 7 6 11 11 H 1.09001 * 113.68920 * 270.87559 * 10 9 7 12 12 C 1.52995 * 113.62207 * 139.97941 * 10 9 7 13 13 S 1.81408 * 109.46950 * 87.50625 * 12 10 9 14 14 C 1.81401 * 101.91882 * 180.02562 * 13 12 10 15 15 O 1.42098 * 108.57630 * 294.48484 * 13 12 10 16 16 O 1.42100 * 108.57917 * 65.51683 * 13 12 10 17 17 C 1.53778 * 87.07777 * 25.43159 * 10 9 7 18 18 C 1.37884 * 107.54853 * 180.02562 * 3 2 1 19 19 C 1.39878 * 107.09373 * 359.97438 * 18 3 2 20 20 Br 1.89101 * 126.07420 * 180.02562 * 19 18 3 21 21 C 1.35505 * 107.85377 * 0.26415 * 19 18 3 22 22 C 1.50698 * 125.57162 * 179.73118 * 21 19 18 23 23 O 1.42907 * 109.47177 * 210.02528 * 22 21 19 24 24 Si 1.86298 * 109.47376 * 330.02889 * 22 21 19 25 25 H 1.08998 * 109.46957 * 94.52210 * 1 2 3 26 26 H 1.09011 * 109.46749 * 214.51817 * 1 2 3 27 27 H 1.08998 * 109.47229 * 334.51536 * 1 2 3 28 28 H 0.96995 * 120.00314 * 5.07195 * 6 4 3 29 29 H 1.08992 * 113.62088 * 203.66384 * 9 7 6 30 30 H 1.08997 * 113.61335 * 334.57080 * 9 7 6 31 31 H 1.09003 * 109.47661 * 207.50463 * 12 10 9 32 32 H 1.09004 * 109.47396 * 327.51087 * 12 10 9 33 33 H 1.08999 * 109.47234 * 60.00480 * 14 13 12 34 34 H 1.09003 * 109.47124 * 180.02562 * 14 13 12 35 35 H 1.08996 * 109.47320 * 300.00007 * 14 13 12 36 36 H 1.08998 * 113.61879 * 220.01980 * 17 10 9 37 37 H 1.09000 * 113.61283 * 89.11764 * 17 10 9 38 38 H 1.07998 * 126.44975 * 179.97438 * 18 3 2 39 39 H 1.08994 * 109.46864 * 90.03107 * 22 21 19 40 40 H 0.96697 * 113.99895 * 180.02562 * 23 22 21 41 41 H 1.48493 * 110.00075 * 178.68037 * 24 22 21 42 42 H 1.48507 * 109.99811 * 300.00055 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8119 2.5123 -0.0005 5 8 0.6259 2.7647 -0.1023 6 7 2.7069 3.5138 0.1119 7 6 2.2451 4.8997 0.2231 8 1 1.2615 5.0550 -0.2203 9 6 2.3811 5.4825 1.6397 10 6 3.7971 5.9310 1.2312 11 1 4.5661 5.1828 1.4237 12 6 4.1749 7.3189 1.7527 13 16 4.8912 7.1669 3.4124 14 6 5.2555 8.8959 3.8230 15 8 3.8855 6.6940 4.2979 16 8 6.1179 6.4566 3.3128 17 6 3.2916 5.9352 -0.2211 18 6 3.5782 0.6892 -0.0006 19 6 3.5530 -0.7093 -0.0003 20 35 5.0611 -1.8502 -0.0002 21 6 2.2559 -1.1015 -0.0056 22 6 1.7716 -2.5285 -0.0130 23 8 0.5157 -2.6018 -0.6909 24 14 3.0151 -3.6019 -0.8915 25 1 -0.3633 -0.0810 -1.0245 26 1 -0.3633 -0.8468 0.5824 27 1 -0.3633 0.9277 0.4422 28 1 3.6566 3.3171 0.1191 29 1 1.7011 6.3108 1.8383 30 1 2.3705 4.7272 2.4255 31 1 4.9047 7.7728 1.0822 32 1 3.2838 7.9452 1.7975 33 1 4.3324 9.4753 3.8071 34 1 5.7000 8.9474 4.8169 35 1 5.9532 9.3037 3.0917 36 1 4.0154 5.5452 -0.9366 37 1 2.8599 6.8871 -0.5304 38 1 4.4582 1.3152 -0.0011 39 1 1.6515 -2.8766 1.0129 40 1 0.1432 -3.4931 -0.7336 41 1 2.5644 -5.0167 -0.8778 42 1 3.1879 -3.1374 -2.2915 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_5000100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:58:18 Heat of formation + Delta-G solvation = -62.918250 kcal Electronic energy + Delta-G solvation = -28260.869959 eV Core-core repulsion = 23996.955517 eV Total energy + Delta-G solvation = -4263.914441 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.028 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.91063 -41.14561 -39.35098 -37.93827 -37.92249 -36.95499 -35.19207 -34.43299 -32.54753 -31.40794 -30.81679 -30.06510 -27.42341 -27.10683 -26.71970 -24.24172 -23.25671 -21.77792 -20.63421 -20.24032 -19.75321 -18.94808 -18.58017 -17.68284 -17.46234 -17.13756 -17.02941 -16.86744 -16.83043 -16.19315 -15.86979 -15.59906 -15.26514 -14.99640 -14.73222 -14.60315 -14.31498 -14.11353 -14.04437 -13.97484 -13.88310 -13.84955 -13.45865 -13.22642 -13.08647 -12.97577 -12.96420 -12.87625 -12.79041 -12.36991 -12.17998 -12.03415 -11.83006 -11.60015 -11.30790 -11.24260 -10.98443 -10.84016 -10.22904 -9.90727 -9.33752 -4.69766 -0.85831 0.10695 0.32223 0.87180 1.21097 1.39964 1.54780 1.92902 1.95763 2.07881 2.23128 2.80131 2.91088 3.16024 3.39146 3.43697 3.47569 3.50011 3.68103 3.74811 3.80585 4.11669 4.12468 4.13276 4.18610 4.24109 4.29151 4.36307 4.43135 4.52491 4.59647 4.61498 4.78008 4.83274 4.85270 4.99101 5.01735 5.04579 5.14405 5.22098 5.51565 5.58517 5.75838 6.34152 6.42038 6.99269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.391 5.391 3 C -0.063 4.063 4 C 0.594 3.406 5 O -0.575 6.575 6 N -0.689 5.689 7 C 0.110 3.890 8 H 0.095 0.905 9 C -0.158 4.158 10 C -0.112 4.112 11 H 0.102 0.898 12 C -0.583 4.583 13 S 2.410 3.590 14 C -0.647 4.647 15 O -0.988 6.988 16 O -0.990 6.990 17 C -0.112 4.112 18 C -0.091 4.091 19 C -0.196 4.196 20 Br 0.094 6.906 21 C 0.096 3.904 22 C -0.044 4.044 23 O -0.557 6.557 24 Si 0.621 3.379 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.417 0.583 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.189 0.811 39 H 0.112 0.888 40 H 0.403 0.597 41 H -0.251 1.251 42 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 5.515 -0.459 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.062 5.062 3 C -0.177 4.177 4 C 0.382 3.618 5 O -0.456 6.456 6 N -0.340 5.340 7 C 0.005 3.995 8 H 0.113 0.887 9 C -0.197 4.197 10 C -0.131 4.131 11 H 0.121 0.879 12 C -0.715 4.715 13 S 2.599 3.401 14 C -0.799 4.799 15 O -0.985 6.985 16 O -0.987 6.987 17 C -0.150 4.150 18 C -0.117 4.117 19 C -0.281 4.281 20 Br 0.178 6.822 21 C -0.027 4.027 22 C -0.154 4.154 23 O -0.367 6.367 24 Si 0.523 3.477 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.255 0.745 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.207 0.793 39 H 0.129 0.871 40 H 0.255 0.745 41 H -0.176 1.176 42 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 2.911 4.649 -0.681 5.527 hybrid contribution -1.463 0.166 -0.513 1.560 sum 1.448 4.815 -1.194 5.168 Atomic orbital electron populations 1.22307 0.74281 1.05156 1.04341 1.43930 1.07881 1.03963 1.50454 1.20182 0.90456 0.87808 1.19241 1.16950 0.85452 0.83750 0.75656 1.90794 1.17686 1.85036 1.52074 1.45230 1.10081 1.05361 1.73335 1.21982 1.00090 0.79897 0.97575 0.88709 1.23770 0.97199 1.01877 0.96830 1.22465 0.97339 0.94545 0.98795 0.87943 1.30169 1.15553 1.05225 1.20525 1.07746 0.74501 0.79102 0.78773 1.30163 1.13996 1.22501 1.13202 1.93557 1.60698 1.79990 1.64291 1.93551 1.46107 1.71752 1.87338 1.23320 0.97186 0.99597 0.94941 1.21510 0.95612 0.92538 1.02050 1.20622 0.90432 0.95048 1.21992 1.96296 1.32446 1.56190 1.97292 1.20064 0.89346 0.88554 1.04700 1.24331 0.93710 0.94450 1.02926 1.86452 1.34506 1.36422 1.79346 0.92891 0.93540 0.77999 0.83262 0.90592 0.87928 0.88943 0.74507 0.87021 0.92170 0.81206 0.81843 0.83050 0.85579 0.82920 0.88841 0.85892 0.79348 0.87095 0.74546 1.17554 1.22235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 9.26 127.77 1.18 1.61 16 2 N -0.39 -2.68 3.16 -519.59 -1.64 -4.33 16 3 C -0.06 -0.35 6.88 40.35 0.28 -0.07 16 4 C 0.59 3.71 7.77 86.44 0.67 4.38 16 5 O -0.57 -7.39 14.24 -4.32 -0.06 -7.45 16 6 N -0.69 0.60 5.25 -444.00 -2.33 -1.73 16 7 C 0.11 -0.27 4.33 45.52 0.20 -0.07 16 8 H 0.09 0.10 7.45 -2.39 -0.02 0.08 16 9 C -0.16 0.41 7.45 31.21 0.23 0.64 16 10 C -0.11 0.80 3.55 -10.18 -0.04 0.76 16 11 H 0.10 -0.65 8.13 -2.39 -0.02 -0.67 16 12 C -0.58 7.10 5.64 71.98 0.41 7.51 16 13 S 2.41 -10.61 5.35 -56.49 -0.30 -10.91 16 14 C -0.65 7.38 10.62 113.37 1.20 8.58 16 15 O -0.99 -5.25 18.10 -127.37 -2.30 -7.56 16 16 O -0.99 -4.65 18.10 -127.37 -2.31 -6.96 16 17 C -0.11 1.03 7.38 31.12 0.23 1.26 16 18 C -0.09 -0.10 10.34 22.58 0.23 0.13 16 19 C -0.20 -0.58 6.15 22.03 0.14 -0.45 16 20 Br 0.09 -0.06 28.25 -20.37 -0.58 -0.64 16 21 C 0.10 0.50 6.18 41.34 0.26 0.75 16 22 C -0.04 -0.07 2.89 71.24 0.21 0.13 16 23 O -0.56 -0.94 10.49 -148.98 -1.56 -2.50 16 24 Si 0.62 2.10 27.10 68.60 1.86 3.96 16 25 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.22 7.13 -2.38 -0.02 0.20 16 27 H 0.09 0.69 6.19 -2.39 -0.01 0.68 16 28 H 0.42 -2.65 7.61 -92.71 -0.71 -3.36 16 29 H 0.11 -0.57 7.90 -2.39 -0.02 -0.59 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.17 -3.11 8.14 -2.39 -0.02 -3.13 16 32 H 0.16 -2.83 7.85 -2.39 -0.02 -2.84 16 33 H 0.15 -2.37 8.14 -2.39 -0.02 -2.39 16 34 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 35 H 0.15 -2.44 8.14 -2.39 -0.02 -2.46 16 36 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.12 -1.55 8.10 -2.39 -0.02 -1.57 16 38 H 0.19 -1.17 7.45 -2.91 -0.02 -1.19 16 39 H 0.11 -0.32 7.96 -2.39 -0.02 -0.34 16 40 H 0.40 -2.51 8.74 -74.06 -0.65 -3.16 16 41 H -0.25 -1.41 7.11 99.48 0.71 -0.70 16 42 H -0.30 -3.56 7.11 99.48 0.71 -2.85 16 Total: 0.00 -34.66 374.20 -4.27 -38.93 By element: Atomic # 1 Polarization: -25.74 SS G_CDS: -0.24 Total: -25.98 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 5.20 Total: 25.17 kcal Atomic # 7 Polarization: -2.09 SS G_CDS: -3.97 Total: -6.06 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -6.23 Total: -24.46 kcal Atomic # 14 Polarization: 2.10 SS G_CDS: 1.86 Total: 3.96 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -0.30 Total: -10.91 kcal Atomic # 35 Polarization: -0.06 SS G_CDS: -0.58 Total: -0.64 kcal Total: -34.66 -4.27 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_5000100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.990 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds