Wall clock time and date at job start Sun Mar 7 2021 05:59:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81391 * 1
3 3 O 1.42103 * 108.58330 * 2 1
4 4 O 1.42108 * 108.57870 * 228.97749 * 2 1 3
5 5 C 1.81401 * 101.92359 * 114.49080 * 2 1 3
6 6 C 1.53001 * 109.46994 * 179.97438 * 5 2 1
7 7 H 1.08995 * 112.85159 * 43.80713 * 6 5 2
8 8 C 1.53782 * 113.61104 * 174.99848 * 6 5 2
9 9 C 1.53785 * 87.08124 * 140.06883 * 8 6 5
10 10 H 1.09000 * 113.61609 * 219.94209 * 9 8 6
11 11 N 1.46497 * 113.61607 * 89.11503 * 9 8 6
12 12 C 1.34778 * 119.99887 * 155.00132 * 11 9 8
13 13 O 1.21280 * 120.00225 * 0.02562 * 12 11 9
14 14 C 1.50696 * 119.99910 * 180.02562 * 12 11 9
15 15 N 1.46499 * 109.47322 * 180.02562 * 14 12 11
16 16 C 1.36827 * 125.06297 * 264.97845 * 15 14 12
17 17 C 1.34244 * 109.93942 * 180.02562 * 16 15 14
18 18 C 1.50694 * 126.50184 * 180.02562 * 17 16 15
19 19 O 1.42895 * 109.47069 * 104.96212 * 18 17 16
20 20 Si 1.86299 * 109.47097 * 344.95864 * 18 17 16
21 21 C 1.46489 * 106.99781 * 0.02562 * 17 16 15
22 22 C 1.39593 * 134.04012 * 179.97438 * 21 17 16
23 23 C 1.36663 * 119.76266 * 179.97438 * 22 21 17
24 24 C 1.38783 * 120.53315 * 0.02610 * 23 22 21
25 25 C 1.37791 * 120.66329 * 359.70361 * 24 23 22
26 26 C 1.37695 * 125.06267 * 84.99614 * 15 14 12
27 27 C 1.53780 * 113.69324 * 272.53529 * 6 5 2
28 28 H 1.09006 * 109.46895 * 305.51091 * 1 2 3
29 29 H 1.09001 * 109.47128 * 65.50820 * 1 2 3
30 30 H 1.08993 * 109.47607 * 185.51048 * 1 2 3
31 31 H 1.08998 * 109.47047 * 59.99756 * 5 2 1
32 32 H 1.08991 * 109.47058 * 299.99821 * 5 2 1
33 33 H 1.09006 * 113.61451 * 25.52030 * 8 6 5
34 34 H 1.09002 * 113.61636 * 254.61653 * 8 6 5
35 35 H 0.96995 * 120.00053 * 335.00087 * 11 9 8
36 36 H 1.09000 * 109.47440 * 59.99869 * 14 12 11
37 37 H 1.09005 * 109.47372 * 300.00073 * 14 12 11
38 38 H 1.08001 * 125.03330 * 0.02562 * 16 15 14
39 39 H 1.09002 * 109.47033 * 224.95946 * 18 17 16
40 40 H 0.96705 * 113.99812 * 180.02562 * 19 18 17
41 41 H 1.48501 * 109.99777 * 60.00069 * 20 18 17
42 42 H 1.48504 * 110.00000 * 181.31620 * 20 18 17
43 43 H 1.07997 * 120.11976 * 0.02562 * 22 21 17
44 44 H 1.08004 * 119.73158 * 180.02562 * 23 22 21
45 45 H 1.07996 * 119.67066 * 179.97438 * 24 23 22
46 46 H 1.08001 * 120.11292 * 180.02562 * 25 24 23
47 47 H 1.08993 * 113.61718 * 105.46189 * 27 6 5
48 48 H 1.09004 * 113.61516 * 334.55898 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.2668 1.3469 0.0000
4 8 2.2667 -0.8841 -1.0163
5 6 2.1887 -0.7358 1.6152
6 6 3.7055 -0.8196 1.7978
7 1 4.2206 0.0877 1.4825
8 6 4.1318 -1.3183 3.1886
9 6 5.2298 -2.1255 2.4761
10 1 5.3808 -3.1209 2.8939
11 7 6.4822 -1.3858 2.3015
12 6 7.6469 -2.0525 2.1770
13 8 7.6581 -3.2649 2.2091
14 6 8.9353 -1.2916 1.9980
15 7 10.0492 -2.2366 1.8868
16 6 10.8454 -2.6387 2.9243
17 6 11.7690 -3.5071 2.4827
18 6 12.8330 -4.1817 3.3096
19 8 12.4721 -5.5470 3.5281
20 14 12.9906 -3.3109 4.9490
21 6 11.5465 -3.6744 1.0445
22 6 12.1679 -4.4287 0.0477
23 6 11.7082 -4.3643 -1.2376
24 6 10.6284 -3.5544 -1.5605
25 6 9.9968 -2.8059 -0.5912
26 6 10.4510 -2.8523 0.7225
27 6 4.3256 -2.1082 1.2322
28 1 -0.3633 0.5970 0.8366
29 1 -0.3633 0.4260 -0.9352
30 1 -0.3634 -1.0228 0.0987
31 1 1.7610 -1.7370 1.6664
32 1 1.7611 -0.1173 2.4042
33 1 3.3818 -1.9392 3.6787
34 1 4.5188 -0.5307 3.8352
35 1 6.4732 -0.4162 2.2755
36 1 9.0952 -0.6405 2.8574
37 1 8.8785 -0.6892 1.0913
38 1 10.7457 -2.3067 3.9472
39 1 13.7857 -4.1378 2.7818
40 1 13.1130 -6.0437 4.0550
41 1 11.6981 -3.3638 5.6785
42 1 14.0586 -3.9470 5.7614
43 1 13.0084 -5.0614 0.2916
44 1 12.1891 -4.9484 -2.0084
45 1 10.2768 -3.5138 -2.5808
46 1 9.1570 -2.1790 -0.8523
47 1 4.8691 -1.9584 0.2995
48 1 3.6286 -2.9451 1.1874
There are 67 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 67
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_22_16534690_9818708.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:59:12
Heat of formation + Delta-G solvation = -28.853233 kcal
Electronic energy + Delta-G solvation = -32267.518187 eV
Core-core repulsion = 27804.682878 eV
Total energy + Delta-G solvation = -4462.835309 eV
No. of doubly occupied orbitals = 67
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 379.133 amu
Computer time = 4.04 seconds
Orbital eigenvalues (eV)
-42.43439 -41.35490 -39.58711 -38.03877 -37.92594 -37.55065 -37.07529 -34.88664
-34.06058 -31.67384 -31.08704 -30.47258 -30.10660 -28.83448 -26.98046 -25.77665
-24.37199 -23.54939 -22.67765 -21.80100 -20.58634 -20.38055 -19.98220 -18.70116
-18.32784 -18.06567 -17.86494 -17.58097 -17.35032 -17.14878 -16.87247 -16.36611
-16.27326 -15.94090 -15.71718 -15.49838 -15.32624 -14.78203 -14.75221 -14.58203
-14.44465 -14.36813 -14.31799 -14.24750 -13.98137 -13.77507 -13.46446 -13.39915
-13.17510 -13.11589 -13.03683 -12.65063 -12.61380 -12.39136 -12.35514 -12.34839
-12.06962 -11.95782 -11.57770 -11.54967 -11.26355 -11.07675 -10.35946 -10.25066
-10.23751 -8.96063 -8.47029 -4.91285 -1.15303 0.33633 0.84865 1.36466
1.39452 1.43567 1.61385 1.63644 1.78726 2.01807 2.09380 2.49565
2.83092 3.12364 3.14413 3.17078 3.35710 3.43979 3.50302 3.57790
3.67667 3.69839 3.72884 3.77217 3.85098 3.87135 3.92945 4.04359
4.12403 4.19446 4.37446 4.40898 4.46139 4.49716 4.50254 4.53431
4.62903 4.71689 4.75720 4.84814 4.85672 4.89203 4.96337 5.05198
5.31322 5.36775 5.70823 5.86431 5.91502 5.95386 6.16854 6.35024
6.42415 6.65698 7.01781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.659 4.659
2 S 2.417 3.583
3 O -0.940 6.940
4 O -0.933 6.933
5 C -0.602 4.602
6 C -0.106 4.106
7 H 0.105 0.895
8 C -0.129 4.129
9 C 0.119 3.881
10 H 0.109 0.891
11 N -0.714 5.714
12 C 0.493 3.507
13 O -0.508 6.508
14 C 0.092 3.908
15 N -0.466 5.466
16 C 0.072 3.928
17 C -0.151 4.151
18 C -0.037 4.037
19 O -0.535 6.535
20 Si 0.679 3.321
21 C -0.085 4.085
22 C -0.066 4.066
23 C -0.145 4.145
24 C -0.097 4.097
25 C -0.126 4.126
26 C 0.109 3.891
27 C -0.151 4.151
28 H 0.128 0.872
29 H 0.131 0.869
30 H 0.129 0.871
31 H 0.136 0.864
32 H 0.136 0.864
33 H 0.102 0.898
34 H 0.081 0.919
35 H 0.403 0.597
36 H 0.125 0.875
37 H 0.120 0.880
38 H 0.169 0.831
39 H 0.072 0.928
40 H 0.375 0.625
41 H -0.256 1.256
42 H -0.261 1.261
43 H 0.121 0.879
44 H 0.122 0.878
45 H 0.125 0.875
46 H 0.115 0.885
47 H 0.083 0.917
48 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.856 5.507 3.496 7.121
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.808 4.808
2 S 2.599 3.401
3 O -0.937 6.937
4 O -0.931 6.931
5 C -0.731 4.731
6 C -0.125 4.125
7 H 0.123 0.877
8 C -0.168 4.168
9 C 0.014 3.986
10 H 0.127 0.873
11 N -0.367 5.367
12 C 0.277 3.723
13 O -0.381 6.381
14 C -0.034 4.034
15 N -0.150 5.150
16 C -0.053 4.053
17 C -0.159 4.159
18 C -0.147 4.147
19 O -0.341 6.341
20 Si 0.580 3.420
21 C -0.090 4.090
22 C -0.084 4.084
23 C -0.164 4.164
24 C -0.116 4.116
25 C -0.147 4.147
26 C 0.005 3.995
27 C -0.189 4.189
28 H 0.147 0.853
29 H 0.149 0.851
30 H 0.147 0.853
31 H 0.154 0.846
32 H 0.155 0.845
33 H 0.120 0.880
34 H 0.099 0.901
35 H 0.238 0.762
36 H 0.143 0.857
37 H 0.138 0.862
38 H 0.186 0.814
39 H 0.090 0.910
40 H 0.222 0.778
41 H -0.180 1.180
42 H -0.185 1.185
43 H 0.139 0.861
44 H 0.140 0.860
45 H 0.143 0.857
46 H 0.133 0.867
47 H 0.102 0.898
48 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -3.083 5.235 3.426 6.975
hybrid contribution -0.811 -0.969 0.694 1.441
sum -3.894 4.267 4.119 7.095
Atomic orbital electron populations
1.30294 1.26768 1.11677 1.12038 1.07969 0.78375 0.75917 0.77838
1.93616 1.79094 1.34457 1.86511 1.93629 1.78849 1.66841 1.53733
1.30315 1.04974 1.14335 1.23471 1.22366 0.90792 0.99893 0.99486
0.87711 1.23342 0.97825 1.00193 0.95450 1.21824 0.82600 0.97298
0.96898 0.87337 1.45633 1.05915 1.10209 1.74936 1.21070 0.85386
0.88962 0.76908 1.90833 1.86454 1.13512 1.47345 1.21586 0.83912
0.91203 1.06719 1.43161 1.26247 1.38973 1.06575 1.21494 0.92083
0.99350 0.92368 1.19408 1.01309 1.02929 0.92216 1.24019 0.97337
0.86061 1.07317 1.86678 1.51030 1.21434 1.74986 0.95396 0.80639
0.90172 0.75770 1.18938 0.97317 0.99747 0.92962 1.20263 0.99106
0.97389 0.91665 1.20659 0.98353 1.01063 0.96359 1.20822 0.95870
0.96305 0.98630 1.19968 1.01643 1.03370 0.89697 1.18156 0.96647
0.97117 0.87617 1.23641 0.99117 0.97130 0.99041 0.85307 0.85073
0.85257 0.84611 0.84532 0.87958 0.90056 0.76209 0.85740 0.86189
0.81407 0.91043 0.77809 1.18047 1.18541 0.86118 0.85950 0.85693
0.86655 0.89831 0.88132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 47.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.66 3.16 10.62 101.05 1.07 4.24 16
2 S 2.42 -5.36 5.35 -107.50 -0.58 -5.93 16
3 O -0.94 -1.65 18.10 -57.83 -1.05 -2.70 16
4 O -0.93 -1.83 18.10 -57.83 -1.05 -2.88 16
5 C -0.60 2.97 5.65 37.16 0.21 3.18 16
6 C -0.11 0.34 3.53 -89.81 -0.32 0.02 16
7 H 0.10 -0.37 8.13 -51.93 -0.42 -0.79 16
8 C -0.13 0.49 7.39 -25.92 -0.19 0.30 16
9 C 0.12 -0.17 4.32 -67.11 -0.29 -0.46 16
10 H 0.11 0.07 7.46 -51.93 -0.39 -0.32 16
11 N -0.71 1.53 5.26 -53.01 -0.28 1.25 16
12 C 0.49 0.40 7.90 -10.99 -0.09 0.31 16
13 O -0.51 -3.18 16.02 5.56 0.09 -3.09 16
14 C 0.09 -0.17 6.48 -5.20 -0.03 -0.20 16
15 N -0.47 -1.03 2.27 -115.71 -0.26 -1.29 16
16 C 0.07 0.16 9.89 -16.73 -0.17 0.00 16
17 C -0.15 -0.57 5.61 -102.71 -0.58 -1.15 16
18 C -0.04 -0.07 3.05 36.00 0.11 0.04 16
19 O -0.53 -1.90 12.86 -35.23 -0.45 -2.36 16
20 Si 0.68 -0.12 30.79 -169.99 -5.23 -5.35 16
21 C -0.09 -0.44 6.35 -105.14 -0.67 -1.11 16
22 C -0.07 -0.28 10.05 -39.65 -0.40 -0.68 16
23 C -0.15 -0.46 9.97 -39.95 -0.40 -0.86 16
24 C -0.10 -0.28 10.01 -39.54 -0.40 -0.68 16
25 C -0.13 -0.43 10.00 -39.43 -0.39 -0.82 16
26 C 0.11 0.47 6.80 -83.99 -0.57 -0.10 16
27 C -0.15 0.21 7.43 -25.92 -0.19 0.02 16
28 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16
29 H 0.13 -0.59 8.14 -51.92 -0.42 -1.01 16
30 H 0.13 -0.83 8.14 -51.93 -0.42 -1.25 16
31 H 0.14 -0.92 7.85 -51.92 -0.41 -1.33 16
32 H 0.14 -0.98 8.14 -51.93 -0.42 -1.40 16
33 H 0.10 -0.47 8.10 -51.93 -0.42 -0.89 16
34 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16
35 H 0.40 -2.13 8.70 -40.82 -0.36 -2.48 16
36 H 0.12 -0.68 8.12 -51.93 -0.42 -1.10 16
37 H 0.12 -0.49 8.14 -51.93 -0.42 -0.91 16
38 H 0.17 -0.07 6.30 -52.49 -0.33 -0.40 16
39 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16
40 H 0.37 -0.32 8.74 45.56 0.40 0.07 16
41 H -0.26 -0.65 7.04 56.52 0.40 -0.26 16
42 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16
43 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16
44 H 0.12 0.14 8.06 -52.48 -0.42 -0.29 16
45 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16
46 H 0.12 0.17 8.06 -52.49 -0.42 -0.25 16
47 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16
48 H 0.10 -0.20 7.90 -51.93 -0.41 -0.61 16
LS Contribution 416.43 15.07 6.28 6.28
Total: 0.00 -17.71 416.43 -12.84 -30.55
By element:
Atomic # 1 Polarization: -9.52 SS G_CDS: -7.02 Total: -16.54 kcal
Atomic # 6 Polarization: 5.34 SS G_CDS: -3.29 Total: 2.05 kcal
Atomic # 7 Polarization: 0.50 SS G_CDS: -0.54 Total: -0.04 kcal
Atomic # 8 Polarization: -8.56 SS G_CDS: -2.46 Total: -11.02 kcal
Atomic # 14 Polarization: -0.12 SS G_CDS: -5.23 Total: -5.35 kcal
Atomic # 16 Polarization: -5.36 SS G_CDS: -0.58 Total: -5.93 kcal
Total LS contribution 6.28 Total: 6.28 kcal
Total: -17.71 -12.84 -30.55 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534690_9818708.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.701 kcal
(2) G-P(sol) polarization free energy of solvation -17.714 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.554 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.04 seconds