Wall clock time and date at job start Sun Mar 7 2021 05:59:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81391 * 1
3 3 O 1.42103 * 108.58330 * 2 1
4 4 O 1.42108 * 108.57870 * 228.97749 * 2 1 3
5 5 C 1.81401 * 101.92359 * 114.49080 * 2 1 3
6 6 C 1.53001 * 109.46994 * 179.97438 * 5 2 1
7 7 H 1.08995 * 112.85159 * 43.80713 * 6 5 2
8 8 C 1.53782 * 113.61104 * 174.99848 * 6 5 2
9 9 C 1.53785 * 87.08124 * 140.06883 * 8 6 5
10 10 H 1.09000 * 113.61609 * 219.94209 * 9 8 6
11 11 N 1.46497 * 113.61607 * 89.11503 * 9 8 6
12 12 C 1.34778 * 119.99887 * 155.00132 * 11 9 8
13 13 O 1.21280 * 120.00225 * 0.02562 * 12 11 9
14 14 C 1.50696 * 119.99910 * 180.02562 * 12 11 9
15 15 N 1.46499 * 109.47322 * 180.02562 * 14 12 11
16 16 C 1.36827 * 125.06297 * 264.97845 * 15 14 12
17 17 C 1.34244 * 109.93942 * 180.02562 * 16 15 14
18 18 C 1.50694 * 126.50184 * 180.02562 * 17 16 15
19 19 O 1.42895 * 109.47069 * 104.96212 * 18 17 16
20 20 Si 1.86299 * 109.47097 * 344.95864 * 18 17 16
21 21 C 1.46489 * 106.99781 * 0.02562 * 17 16 15
22 22 C 1.39593 * 134.04012 * 179.97438 * 21 17 16
23 23 C 1.36663 * 119.76266 * 179.97438 * 22 21 17
24 24 C 1.38783 * 120.53315 * 0.02610 * 23 22 21
25 25 C 1.37791 * 120.66329 * 359.70361 * 24 23 22
26 26 C 1.37695 * 125.06267 * 84.99614 * 15 14 12
27 27 C 1.53780 * 113.69324 * 272.53529 * 6 5 2
28 28 H 1.09006 * 109.46895 * 305.51091 * 1 2 3
29 29 H 1.09001 * 109.47128 * 65.50820 * 1 2 3
30 30 H 1.08993 * 109.47607 * 185.51048 * 1 2 3
31 31 H 1.08998 * 109.47047 * 59.99756 * 5 2 1
32 32 H 1.08991 * 109.47058 * 299.99821 * 5 2 1
33 33 H 1.09006 * 113.61451 * 25.52030 * 8 6 5
34 34 H 1.09002 * 113.61636 * 254.61653 * 8 6 5
35 35 H 0.96995 * 120.00053 * 335.00087 * 11 9 8
36 36 H 1.09000 * 109.47440 * 59.99869 * 14 12 11
37 37 H 1.09005 * 109.47372 * 300.00073 * 14 12 11
38 38 H 1.08001 * 125.03330 * 0.02562 * 16 15 14
39 39 H 1.09002 * 109.47033 * 224.95946 * 18 17 16
40 40 H 0.96705 * 113.99812 * 180.02562 * 19 18 17
41 41 H 1.48501 * 109.99777 * 60.00069 * 20 18 17
42 42 H 1.48504 * 110.00000 * 181.31620 * 20 18 17
43 43 H 1.07997 * 120.11976 * 0.02562 * 22 21 17
44 44 H 1.08004 * 119.73158 * 180.02562 * 23 22 21
45 45 H 1.07996 * 119.67066 * 179.97438 * 24 23 22
46 46 H 1.08001 * 120.11292 * 180.02562 * 25 24 23
47 47 H 1.08993 * 113.61718 * 105.46189 * 27 6 5
48 48 H 1.09004 * 113.61516 * 334.55898 * 27 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 8 2.2668 1.3469 0.0000
4 8 2.2667 -0.8841 -1.0163
5 6 2.1887 -0.7358 1.6152
6 6 3.7055 -0.8196 1.7978
7 1 4.2206 0.0877 1.4825
8 6 4.1318 -1.3183 3.1886
9 6 5.2298 -2.1255 2.4761
10 1 5.3808 -3.1209 2.8939
11 7 6.4822 -1.3858 2.3015
12 6 7.6469 -2.0525 2.1770
13 8 7.6581 -3.2649 2.2091
14 6 8.9353 -1.2916 1.9980
15 7 10.0492 -2.2366 1.8868
16 6 10.8454 -2.6387 2.9243
17 6 11.7690 -3.5071 2.4827
18 6 12.8330 -4.1817 3.3096
19 8 12.4721 -5.5470 3.5281
20 14 12.9906 -3.3109 4.9490
21 6 11.5465 -3.6744 1.0445
22 6 12.1679 -4.4287 0.0477
23 6 11.7082 -4.3643 -1.2376
24 6 10.6284 -3.5544 -1.5605
25 6 9.9968 -2.8059 -0.5912
26 6 10.4510 -2.8523 0.7225
27 6 4.3256 -2.1082 1.2322
28 1 -0.3633 0.5970 0.8366
29 1 -0.3633 0.4260 -0.9352
30 1 -0.3634 -1.0228 0.0987
31 1 1.7610 -1.7370 1.6664
32 1 1.7611 -0.1173 2.4042
33 1 3.3818 -1.9392 3.6787
34 1 4.5188 -0.5307 3.8352
35 1 6.4732 -0.4162 2.2755
36 1 9.0952 -0.6405 2.8574
37 1 8.8785 -0.6892 1.0913
38 1 10.7457 -2.3067 3.9472
39 1 13.7857 -4.1378 2.7818
40 1 13.1130 -6.0437 4.0550
41 1 11.6981 -3.3638 5.6785
42 1 14.0586 -3.9470 5.7614
43 1 13.0084 -5.0614 0.2916
44 1 12.1891 -4.9484 -2.0084
45 1 10.2768 -3.5138 -2.5808
46 1 9.1570 -2.1790 -0.8523
47 1 4.8691 -1.9584 0.2995
48 1 3.6286 -2.9451 1.1874
There are 67 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 67
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_22_16534690_9818708.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 7 2021 05:59:11
Heat of formation + Delta-G solvation = -38.518902 kcal
Electronic energy + Delta-G solvation = -32267.937322 eV
Core-core repulsion = 27804.682878 eV
Total energy + Delta-G solvation = -4463.254444 eV
No. of doubly occupied orbitals = 67
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 379.133 amu
Computer time = 1.41 seconds
Orbital eigenvalues (eV)
-42.55632 -41.29585 -39.57841 -38.10166 -37.97899 -37.71296 -37.01337 -34.88189
-34.14560 -31.65683 -30.97861 -30.30301 -30.16527 -28.85509 -26.77486 -25.85777
-24.26930 -23.68981 -22.78787 -21.84234 -20.57055 -20.40668 -19.81573 -18.68502
-18.48656 -18.14322 -17.70416 -17.66402 -17.18934 -16.98340 -16.79399 -16.44833
-16.36786 -15.92504 -15.80411 -15.38003 -15.27987 -14.88361 -14.83032 -14.75186
-14.43610 -14.17194 -14.11587 -14.02263 -13.92799 -13.57106 -13.53829 -13.29949
-13.13968 -13.02078 -12.92621 -12.74200 -12.58672 -12.53459 -12.41034 -12.22367
-12.10354 -11.88276 -11.73042 -11.36450 -11.21346 -11.02447 -10.56612 -10.34914
-10.20274 -9.17570 -8.64950 -4.90464 -0.91394 0.12266 0.62169 1.30560
1.37010 1.39215 1.61554 1.70579 1.89845 1.97571 2.13578 2.74070
2.91944 3.10319 3.35338 3.41871 3.52827 3.54884 3.61750 3.69254
3.73764 3.79294 3.83642 4.00534 4.06961 4.08530 4.11812 4.19092
4.21528 4.26571 4.37371 4.39528 4.48848 4.55742 4.69724 4.71392
4.77099 4.78397 4.79655 4.89048 4.94830 4.97508 4.98385 5.10841
5.12820 5.49465 5.49925 5.64544 5.71640 5.74239 6.15711 6.21390
6.41944 6.67873 7.08277
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.647 4.647
2 S 2.409 3.591
3 O -0.989 6.989
4 O -0.989 6.989
5 C -0.585 4.585
6 C -0.109 4.109
7 H 0.106 0.894
8 C -0.111 4.111
9 C 0.108 3.892
10 H 0.082 0.918
11 N -0.697 5.697
12 C 0.491 3.509
13 O -0.572 6.572
14 C 0.087 3.913
15 N -0.467 5.467
16 C 0.074 3.926
17 C -0.181 4.181
18 C -0.059 4.059
19 O -0.565 6.565
20 Si 0.783 3.217
21 C -0.117 4.117
22 C -0.086 4.086
23 C -0.152 4.152
24 C -0.107 4.107
25 C -0.136 4.136
26 C 0.090 3.910
27 C -0.160 4.160
28 H 0.154 0.846
29 H 0.127 0.873
30 H 0.151 0.849
31 H 0.161 0.839
32 H 0.171 0.829
33 H 0.116 0.884
34 H 0.097 0.903
35 H 0.421 0.579
36 H 0.168 0.832
37 H 0.145 0.855
38 H 0.195 0.805
39 H 0.079 0.921
40 H 0.389 0.611
41 H -0.290 1.290
42 H -0.285 1.285
43 H 0.123 0.877
44 H 0.139 0.861
45 H 0.145 0.855
46 H 0.130 0.870
47 H 0.059 0.941
48 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.373 7.263 5.237 9.965
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.799 4.799
2 S 2.598 3.402
3 O -0.987 6.987
4 O -0.986 6.986
5 C -0.716 4.716
6 C -0.128 4.128
7 H 0.124 0.876
8 C -0.150 4.150
9 C 0.002 3.998
10 H 0.101 0.899
11 N -0.350 5.350
12 C 0.277 3.723
13 O -0.450 6.450
14 C -0.037 4.037
15 N -0.149 5.149
16 C -0.052 4.052
17 C -0.188 4.188
18 C -0.166 4.166
19 O -0.375 6.375
20 Si 0.686 3.314
21 C -0.121 4.121
22 C -0.105 4.105
23 C -0.171 4.171
24 C -0.127 4.127
25 C -0.156 4.156
26 C -0.015 4.015
27 C -0.199 4.199
28 H 0.172 0.828
29 H 0.145 0.855
30 H 0.169 0.831
31 H 0.179 0.821
32 H 0.189 0.811
33 H 0.135 0.865
34 H 0.115 0.885
35 H 0.259 0.741
36 H 0.186 0.814
37 H 0.163 0.837
38 H 0.211 0.789
39 H 0.097 0.903
40 H 0.239 0.761
41 H -0.217 1.217
42 H -0.212 1.212
43 H 0.141 0.859
44 H 0.157 0.843
45 H 0.163 0.837
46 H 0.148 0.852
47 H 0.078 0.922
48 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -4.593 7.059 5.108 9.850
hybrid contribution -0.437 -1.573 0.159 1.640
sum -5.031 5.486 5.267 9.118
Atomic orbital electron populations
1.30161 1.22969 1.13687 1.13049 1.07763 0.79578 0.74429 0.78427
1.93550 1.80833 1.36739 1.87540 1.93562 1.80698 1.67511 1.56849
1.30179 1.04001 1.16067 1.21380 1.22399 0.92024 0.98803 0.99576
0.87587 1.23301 0.96622 1.00017 0.95024 1.21885 0.83375 0.96983
0.97538 0.89944 1.45527 1.05133 1.11069 1.73308 1.21554 0.86735
0.88313 0.75701 1.90811 1.87384 1.16234 1.50618 1.22014 0.81302
0.90513 1.09899 1.43395 1.26759 1.38985 1.05779 1.21934 0.91317
0.98570 0.93332 1.19764 1.02796 1.04195 0.92060 1.24489 0.97157
0.85605 1.09362 1.86626 1.52270 1.22761 1.75793 0.94221 0.77110
0.88295 0.71764 1.19372 0.98178 1.00456 0.94079 1.20458 0.99705
0.98004 0.92288 1.20928 0.98539 1.01215 0.96454 1.21136 0.95792
0.96095 0.99628 1.20243 1.02035 1.03664 0.89664 1.18413 0.96887
0.97632 0.88615 1.23700 0.99482 0.98722 0.97997 0.82800 0.85452
0.83096 0.82146 0.81101 0.86544 0.88454 0.74124 0.81415 0.83701
0.78872 0.90256 0.76098 1.21721 1.21193 0.85899 0.84275 0.83715
0.85233 0.92186 0.87835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.65 7.30 10.62 113.37 1.20 8.50 16
2 S 2.41 -10.38 5.35 -56.49 -0.30 -10.68 16
3 O -0.99 -4.33 18.10 -127.37 -2.31 -6.64 16
4 O -0.99 -5.59 18.10 -127.37 -2.31 -7.89 16
5 C -0.59 6.97 5.65 71.98 0.41 7.38 16
6 C -0.11 0.81 3.53 -10.27 -0.04 0.77 16
7 H 0.11 -0.81 8.13 -2.39 -0.02 -0.83 16
8 C -0.11 1.05 7.39 31.12 0.23 1.28 16
9 C 0.11 -0.27 4.32 45.52 0.20 -0.07 16
10 H 0.08 0.26 7.46 -2.39 -0.02 0.24 16
11 N -0.70 3.03 5.26 -440.03 -2.32 0.71 16
12 C 0.49 1.07 7.90 87.66 0.69 1.76 16
13 O -0.57 -8.41 16.02 -3.03 -0.05 -8.46 16
14 C 0.09 -0.38 6.48 85.63 0.55 0.17 16
15 N -0.47 -2.28 2.27 -519.99 -1.18 -3.46 16
16 C 0.07 0.37 9.89 83.00 0.82 1.19 16
17 C -0.18 -1.64 5.61 -18.63 -0.10 -1.74 16
18 C -0.06 -0.29 3.05 71.23 0.22 -0.07 16
19 O -0.57 -5.03 12.86 -148.98 -1.92 -6.94 16
20 Si 0.78 -0.42 30.79 68.60 2.11 1.70 16
21 C -0.12 -1.45 6.35 -20.20 -0.13 -1.58 16
22 C -0.09 -0.94 10.05 22.23 0.22 -0.72 16
23 C -0.15 -1.23 9.97 22.03 0.22 -1.01 16
24 C -0.11 -0.77 10.01 22.29 0.22 -0.54 16
25 C -0.14 -1.11 10.00 22.37 0.22 -0.88 16
26 C 0.09 0.92 6.80 39.03 0.27 1.18 16
27 C -0.16 0.31 7.43 31.12 0.23 0.54 16
28 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16
29 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16
30 H 0.15 -2.31 8.14 -2.39 -0.02 -2.33 16
31 H 0.16 -2.62 7.85 -2.39 -0.02 -2.64 16
32 H 0.17 -3.12 8.14 -2.39 -0.02 -3.14 16
33 H 0.12 -1.38 8.10 -2.38 -0.02 -1.40 16
34 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16
35 H 0.42 -4.92 8.70 -92.71 -0.81 -5.73 16
36 H 0.17 -2.26 8.12 -2.39 -0.02 -2.28 16
37 H 0.15 -1.37 8.14 -2.38 -0.02 -1.39 16
38 H 0.19 -0.30 6.30 -2.91 -0.02 -0.31 16
39 H 0.08 0.17 7.96 -2.39 -0.02 0.15 16
40 H 0.39 -0.09 8.74 -74.05 -0.65 -0.73 16
41 H -0.29 -1.47 7.04 99.48 0.70 -0.77 16
42 H -0.29 -0.95 7.11 99.48 0.71 -0.25 16
43 H 0.12 1.07 8.06 -2.91 -0.02 1.04 16
44 H 0.14 0.47 8.06 -2.91 -0.02 0.45 16
45 H 0.15 0.29 8.06 -2.91 -0.02 0.27 16
46 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16
47 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16
48 H 0.10 -0.32 7.90 -2.38 -0.02 -0.34 16
Total: 0.00 -46.56 416.43 -3.25 -49.80
By element:
Atomic # 1 Polarization: -23.87 SS G_CDS: -0.43 Total: -24.30 kcal
Atomic # 6 Polarization: 10.72 SS G_CDS: 5.44 Total: 16.16 kcal
Atomic # 7 Polarization: 0.75 SS G_CDS: -3.50 Total: -2.75 kcal
Atomic # 8 Polarization: -23.36 SS G_CDS: -6.57 Total: -29.93 kcal
Atomic # 14 Polarization: -0.42 SS G_CDS: 2.11 Total: 1.70 kcal
Atomic # 16 Polarization: -10.38 SS G_CDS: -0.30 Total: -10.68 kcal
Total: -46.56 -3.25 -49.80 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_22_16534690_9818708.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.283 kcal
(2) G-P(sol) polarization free energy of solvation -46.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.273 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.519 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.41 seconds