Wall clock time and date at job start Sun Mar 7 2021 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35661 * 116.99798 * 2 1 4 4 C 1.38400 * 120.11926 * 0.02585 * 3 2 1 5 5 C 1.38724 * 120.02993 * 179.97438 * 4 3 2 6 6 O 1.35718 * 119.86351 * 179.97438 * 5 4 3 7 7 C 1.42898 * 116.99920 * 0.02562 * 6 5 4 8 8 C 1.39144 * 120.27588 * 0.02562 * 5 4 3 9 9 C 1.50705 * 119.88311 * 180.02562 * 8 5 4 10 10 O 1.42898 * 109.46966 * 74.99331 * 9 8 5 11 11 Si 1.86299 * 109.47120 * 194.99625 * 9 8 5 12 12 C 1.37588 * 120.24146 * 359.66844 * 8 5 4 13 13 C 1.39821 * 119.95692 * 0.62989 * 12 8 5 14 14 C 1.47301 * 120.13199 * 179.67011 * 13 12 8 15 15 O 1.21629 * 119.99965 * 179.72303 * 14 13 12 16 16 N 1.34773 * 120.00329 * 359.72665 * 14 13 12 17 17 C 1.46501 * 120.00122 * 179.97438 * 16 14 13 18 18 H 1.08993 * 112.90929 * 336.25213 * 17 16 14 19 19 C 1.53962 * 113.66387 * 107.55425 * 17 16 14 20 20 C 1.53782 * 87.11063 * 139.88885 * 19 17 16 21 21 H 1.08997 * 113.61225 * 89.18406 * 20 19 17 22 22 C 1.52998 * 113.68747 * 220.07804 * 20 19 17 23 23 S 1.81404 * 109.47101 * 272.53379 * 22 20 19 24 24 C 1.81404 * 101.92094 * 180.02562 * 23 22 20 25 25 O 1.42101 * 108.58045 * 294.49021 * 23 22 20 26 26 O 1.42105 * 108.57447 * 65.51478 * 23 22 20 27 27 C 1.53781 * 87.08260 * 334.63747 * 20 19 17 28 28 H 1.09002 * 109.47268 * 59.99841 * 1 2 3 29 29 H 1.09006 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47153 * 299.99638 * 1 2 3 31 31 H 1.07999 * 119.98720 * 359.97438 * 4 3 2 32 32 H 1.09001 * 109.47222 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46868 * 299.99768 * 7 6 5 34 34 H 1.09000 * 109.47270 * 59.99394 * 7 6 5 35 35 H 1.09004 * 109.46607 * 314.99911 * 9 8 5 36 36 H 0.96707 * 114.00186 * 60.00536 * 10 9 8 37 37 H 1.48493 * 109.99860 * 58.68160 * 11 9 8 38 38 H 1.48501 * 109.99740 * 179.97438 * 11 9 8 39 39 H 1.07994 * 120.02225 * 180.30379 * 12 8 5 40 40 H 0.97002 * 120.00080 * 0.02562 * 16 14 13 41 41 H 1.08997 * 113.53543 * 25.33559 * 19 17 16 42 42 H 1.08994 * 113.66446 * 254.45762 * 19 17 16 43 43 H 1.08995 * 109.47742 * 32.53801 * 22 20 19 44 44 H 1.09003 * 109.47049 * 152.53819 * 22 20 19 45 45 H 1.09002 * 109.46512 * 60.00455 * 24 23 22 46 46 H 1.08995 * 109.46894 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47205 * 300.00067 * 24 23 22 48 48 H 1.09002 * 113.61445 * 139.98212 * 27 20 19 49 49 H 1.09002 * 113.61408 * 270.79943 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 1.2934 2.3710 0.0005 5 6 1.9251 3.6061 0.0011 6 8 1.1849 4.7437 0.0011 7 6 -0.2361 4.5931 0.0011 8 6 3.3143 3.6835 0.0005 9 6 3.9914 5.0299 0.0017 10 8 3.8942 5.6107 1.3037 11 14 5.7859 4.8231 -0.4538 12 6 4.0723 2.5353 0.0063 13 6 3.4460 1.2852 -0.0005 14 6 4.2538 0.0534 -0.0017 15 8 3.7065 -1.0328 -0.0025 16 7 5.5994 0.1299 -0.0017 17 6 6.4028 -1.0952 -0.0022 18 1 5.8670 -1.9541 0.4017 19 6 7.0973 -1.3781 -1.3469 20 6 8.3223 -1.8245 -0.5315 21 1 8.3122 -2.8832 -0.2725 22 6 9.6562 -1.3714 -1.1284 23 16 10.2282 -2.6010 -2.3333 24 6 11.7903 -1.8726 -2.8992 25 8 10.5164 -3.8100 -1.6444 26 8 9.3174 -2.6239 -3.4238 27 6 7.8085 -0.9103 0.5933 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2148 2.3165 0.0005 32 1 -0.7058 5.5767 0.0006 33 1 -0.5432 4.0438 -0.8890 34 1 -0.5433 4.0437 0.8910 35 1 3.5050 5.6817 -0.7241 36 1 4.3068 5.0834 2.0015 37 1 5.9004 4.1907 -1.7925 38 1 6.4646 6.1439 -0.4568 39 1 5.1504 2.5995 0.0109 40 1 6.0360 0.9962 -0.0006 41 1 7.2723 -0.4827 -1.9432 42 1 6.6350 -2.1839 -1.9170 43 1 9.5244 -0.4101 -1.6249 44 1 10.3948 -1.2713 -0.3330 45 1 12.4658 -1.7580 -2.0514 46 1 12.2477 -2.5259 -3.6421 47 1 11.5960 -0.8964 -3.3435 48 1 7.9205 -1.3384 1.5894 49 1 8.1793 0.1127 0.5281 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12297780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:59:54 Heat of formation + Delta-G solvation = -153.111006 kcal Electronic energy + Delta-G solvation = -34304.220344 eV Core-core repulsion = 29520.510622 eV Total energy + Delta-G solvation = -4783.709722 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.137 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.11501 -40.97181 -40.11336 -39.24824 -38.42451 -37.92189 -36.96759 -36.94792 -34.82280 -32.24767 -31.96291 -30.77461 -29.98867 -29.00238 -28.16691 -26.64371 -26.13361 -25.16280 -23.66615 -22.50877 -21.56890 -20.73452 -19.99719 -19.73801 -18.78416 -18.18914 -17.93984 -17.68243 -17.33465 -17.22275 -16.95280 -16.81679 -16.61256 -16.32879 -16.20633 -16.06297 -15.80947 -15.75105 -15.60921 -15.34465 -14.79372 -14.51005 -14.18598 -14.05291 -13.97508 -13.86672 -13.56387 -13.52324 -13.34619 -13.25695 -13.11362 -12.98872 -12.95213 -12.67905 -12.59215 -12.53744 -12.49518 -12.24870 -12.00426 -11.90407 -11.88950 -11.65193 -11.40172 -11.02843 -10.82844 -10.36699 -10.04277 -9.91115 -9.19162 -5.03868 -0.85156 -0.26176 0.07925 1.32547 1.67554 1.76029 1.97241 2.03302 2.11055 2.13680 2.19777 2.61014 2.82847 3.17227 3.43572 3.46686 3.52595 3.53637 3.63753 3.72813 3.74969 3.84035 3.88365 4.09972 4.13182 4.14658 4.17081 4.22192 4.24333 4.25001 4.25654 4.26920 4.40679 4.50635 4.60729 4.63288 4.64403 4.74702 4.81825 4.83170 4.89987 4.95449 5.01990 5.02609 5.05058 5.14171 5.28432 5.31130 5.63922 6.02134 6.28025 6.60906 6.86702 7.30645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.304 6.304 3 C 0.215 3.785 4 C -0.312 4.312 5 C 0.211 3.789 6 O -0.314 6.314 7 C 0.012 3.988 8 C -0.204 4.204 9 C -0.066 4.066 10 O -0.554 6.554 11 Si 0.781 3.219 12 C 0.011 3.989 13 C -0.226 4.226 14 C 0.562 3.438 15 O -0.568 6.568 16 N -0.704 5.704 17 C 0.113 3.887 18 H 0.092 0.908 19 C -0.162 4.162 20 C -0.112 4.112 21 H 0.094 0.906 22 C -0.577 4.577 23 S 2.402 3.598 24 C -0.643 4.643 25 O -0.996 6.996 26 O -0.990 6.990 27 C -0.110 4.110 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.393 0.607 37 H -0.272 1.272 38 H -0.295 1.295 39 H 0.173 0.827 40 H 0.416 0.584 41 H 0.111 0.889 42 H 0.052 0.948 43 H 0.170 0.830 44 H 0.174 0.826 45 H 0.154 0.846 46 H 0.124 0.876 47 H 0.154 0.846 48 H 0.090 0.910 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.719 7.141 3.415 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.215 6.215 3 C 0.165 3.835 4 C -0.332 4.332 5 C 0.163 3.837 6 O -0.226 6.226 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.174 4.174 10 O -0.362 6.362 11 Si 0.685 3.315 12 C -0.006 4.006 13 C -0.230 4.230 14 C 0.351 3.649 15 O -0.448 6.448 16 N -0.357 5.357 17 C 0.008 3.992 18 H 0.110 0.890 19 C -0.200 4.200 20 C -0.132 4.132 21 H 0.112 0.888 22 C -0.708 4.708 23 S 2.591 3.409 24 C -0.795 4.795 25 O -0.994 6.994 26 O -0.988 6.988 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.130 0.870 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.243 0.757 37 H -0.199 1.199 38 H -0.223 1.223 39 H 0.190 0.810 40 H 0.254 0.746 41 H 0.129 0.871 42 H 0.071 0.929 43 H 0.188 0.812 44 H 0.192 0.808 45 H 0.173 0.827 46 H 0.143 0.857 47 H 0.172 0.828 48 H 0.108 0.892 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.351 6.193 2.240 7.390 hybrid contribution -1.162 0.744 -0.305 1.413 sum 2.189 6.938 1.935 7.528 Atomic orbital electron populations 1.23457 0.76632 1.05698 1.02571 1.86369 1.23115 1.25991 1.86057 1.19032 0.91320 0.84600 0.88500 1.21407 1.01952 0.90854 1.18954 1.18982 0.91139 0.84809 0.88784 1.86141 1.21036 1.28830 1.86565 1.23452 0.76354 1.05791 1.02560 1.19645 0.90794 0.96932 1.13157 1.25159 1.11836 0.91481 0.88965 1.86513 1.82711 1.50205 1.16789 0.94325 0.73167 0.81470 0.82541 1.20877 0.99874 0.88448 0.91448 1.19186 0.90680 0.94022 1.19128 1.18109 0.82920 0.88217 0.75662 1.90829 1.72519 1.30477 1.50962 1.45687 1.04743 1.10248 1.74981 1.22520 0.91167 0.88181 0.97316 0.88984 1.23824 0.96137 1.02763 0.97305 1.22085 0.91313 1.00992 0.98788 0.88773 1.30123 1.06759 1.17281 1.16687 1.07933 0.78357 0.77876 0.76706 1.30133 1.20221 1.15009 1.14151 1.93548 1.85723 1.44638 1.75461 1.93556 1.63359 1.87702 1.54155 1.23376 0.91277 1.02086 0.98108 0.91229 0.86966 0.90974 0.82216 0.86335 0.91370 0.91246 0.88651 0.75729 1.19859 1.22301 0.81027 0.74555 0.87099 0.92885 0.81169 0.80806 0.82735 0.85701 0.82765 0.89163 0.85192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -2.73 8.56 -68.81 -0.59 -3.32 16 3 C 0.21 1.33 6.70 22.82 0.15 1.48 16 4 C -0.31 -0.64 8.01 22.42 0.18 -0.46 16 5 C 0.21 0.56 6.67 22.60 0.15 0.71 16 6 O -0.31 -0.89 9.80 -90.40 -0.89 -1.77 16 7 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 8 C -0.20 0.01 5.27 -19.80 -0.10 -0.10 16 9 C -0.07 0.07 2.37 71.24 0.17 0.24 16 10 O -0.55 0.08 12.88 -148.98 -1.92 -1.84 16 11 Si 0.78 -4.84 29.91 68.60 2.05 -2.78 16 12 C 0.01 -0.03 8.14 22.50 0.18 0.15 16 13 C -0.23 -0.92 5.89 -20.00 -0.12 -1.04 16 14 C 0.56 3.92 7.76 86.63 0.67 4.59 16 15 O -0.57 -9.54 14.75 16.84 0.25 -9.29 16 16 N -0.70 1.40 5.31 -443.12 -2.35 -0.95 16 17 C 0.11 -0.14 4.25 45.58 0.19 0.06 16 18 H 0.09 0.45 7.46 -2.39 -0.02 0.43 16 19 C -0.16 0.16 7.44 31.18 0.23 0.40 16 20 C -0.11 0.60 3.65 -10.27 -0.04 0.56 16 21 H 0.09 -0.20 8.13 -2.39 -0.02 -0.22 16 22 C -0.58 6.90 5.64 71.98 0.41 7.31 16 23 S 2.40 -7.32 5.35 -56.49 -0.30 -7.62 16 24 C -0.64 7.19 10.62 113.37 1.20 8.39 16 25 O -1.00 -7.06 18.10 -127.37 -2.30 -9.36 16 26 O -0.99 -6.82 18.10 -127.37 -2.31 -9.13 16 27 C -0.11 1.02 7.39 31.12 0.23 1.25 16 28 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 29 H 0.11 -0.24 8.14 -2.38 -0.02 -0.26 16 30 H 0.07 -0.27 7.66 -2.39 -0.02 -0.29 16 31 H 0.16 -0.40 4.50 -2.91 -0.01 -0.42 16 32 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16 33 H 0.07 -0.43 7.65 -2.38 -0.02 -0.45 16 34 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 35 H 0.10 0.23 7.82 -2.38 -0.02 0.21 16 36 H 0.39 -3.60 8.70 -74.05 -0.64 -4.25 16 37 H -0.27 0.68 7.11 99.48 0.71 1.39 16 38 H -0.30 -0.46 7.11 99.48 0.71 0.25 16 39 H 0.17 -1.94 3.44 -2.91 -0.01 -1.95 16 40 H 0.42 -4.39 6.74 -92.71 -0.63 -5.01 16 41 H 0.11 -0.56 7.90 -2.39 -0.02 -0.58 16 42 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.17 -3.17 7.85 -2.39 -0.02 -3.19 16 44 H 0.17 -3.25 8.14 -2.39 -0.02 -3.27 16 45 H 0.15 -2.48 8.14 -2.39 -0.02 -2.50 16 46 H 0.12 -1.14 8.14 -2.39 -0.02 -1.16 16 47 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 48 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.13 -2.12 8.08 -2.39 -0.02 -2.14 16 Total: 0.00 -45.63 412.73 -2.84 -48.47 By element: Atomic # 1 Polarization: -27.88 SS G_CDS: -0.22 Total: -28.10 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 5.74 Total: 25.71 kcal Atomic # 7 Polarization: 1.40 SS G_CDS: -2.35 Total: -0.95 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -7.76 Total: -34.71 kcal Atomic # 14 Polarization: -4.84 SS G_CDS: 2.05 Total: -2.78 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -0.30 Total: -7.62 kcal Total: -45.63 -2.84 -48.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12297780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.640 kcal (2) G-P(sol) polarization free energy of solvation -45.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds