Wall clock time and date at job start Sun Mar 7 2021 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42109 * 108.58020 * 2 1 4 4 O 1.42097 * 108.58242 * 228.97240 * 2 1 3 5 5 C 1.81402 * 101.92232 * 114.48316 * 2 1 3 6 6 C 1.53001 * 109.47104 * 179.97438 * 5 2 1 7 7 H 1.09000 * 112.85079 * 43.81105 * 6 5 2 8 8 C 1.53781 * 113.61224 * 174.99926 * 6 5 2 9 9 C 1.53781 * 87.08051 * 140.06769 * 8 6 5 10 10 H 1.09003 * 113.61549 * 89.19948 * 9 8 6 11 11 N 1.46500 * 113.61775 * 220.01970 * 9 8 6 12 12 C 1.34774 * 119.99968 * 204.99858 * 11 9 8 13 13 O 1.21690 * 120.00525 * 0.02562 * 12 11 9 14 14 C 1.46428 * 119.99837 * 179.97438 * 12 11 9 15 15 C 1.34804 * 120.00289 * 180.02562 * 14 12 11 16 16 C 1.47208 * 120.00184 * 180.02562 * 15 14 12 17 17 C 1.39838 * 120.17014 * 179.97438 * 16 15 14 18 18 C 1.37892 * 119.82824 * 180.02562 * 17 16 15 19 19 C 1.38399 * 120.16594 * 0.27818 * 18 17 16 20 20 C 1.50705 * 119.82420 * 179.72110 * 19 18 17 21 21 O 1.42895 * 109.47219 * 64.99842 * 20 19 18 22 22 Si 1.86298 * 109.47069 * 185.00122 * 20 19 18 23 23 C 1.38397 * 120.35048 * 359.44592 * 19 18 17 24 24 C 1.37896 * 120.16898 * 0.55203 * 23 19 18 25 25 C 1.53775 * 113.69452 * 272.53508 * 6 5 2 26 26 H 1.08997 * 109.47636 * 305.51328 * 1 2 3 27 27 H 1.09001 * 109.47291 * 65.51884 * 1 2 3 28 28 H 1.09001 * 109.47016 * 185.51038 * 1 2 3 29 29 H 1.08997 * 109.46820 * 60.00480 * 5 2 1 30 30 H 1.08999 * 109.47295 * 300.00312 * 5 2 1 31 31 H 1.09000 * 113.61821 * 25.52322 * 8 6 5 32 32 H 1.09001 * 113.69234 * 254.62217 * 8 6 5 33 33 H 0.96998 * 119.99689 * 24.99581 * 11 9 8 34 34 H 1.08005 * 119.99829 * 0.02562 * 14 12 11 35 35 H 1.08005 * 119.99882 * 359.97438 * 15 14 12 36 36 H 1.08008 * 120.08453 * 0.03932 * 17 16 15 37 37 H 1.08002 * 119.91290 * 179.97438 * 18 17 16 38 38 H 1.08999 * 109.47055 * 305.00122 * 20 19 18 39 39 H 0.96706 * 114.00043 * 59.99714 * 21 20 19 40 40 H 1.48500 * 109.99927 * 180.02562 * 22 20 19 41 41 H 1.48497 * 110.00123 * 301.31694 * 22 20 19 42 42 H 1.07999 * 119.91825 * 180.28304 * 23 19 18 43 43 H 1.07999 * 120.09101 * 179.75017 * 24 23 19 44 44 H 1.09002 * 113.61528 * 105.46148 * 25 6 5 45 45 H 1.08996 * 113.61723 * 334.56361 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.7054 -0.8194 1.7980 7 1 4.2205 0.0879 1.4826 8 6 4.1317 -1.3179 3.1889 9 6 5.2297 -2.1252 2.4765 10 1 6.1620 -1.5754 2.3478 11 7 5.4313 -3.4636 3.0370 12 6 6.6207 -4.0814 2.8952 13 8 7.5274 -3.5273 2.3021 14 6 6.8224 -5.4189 3.4560 15 6 8.0122 -6.0367 3.3147 16 6 8.2148 -7.3816 3.8780 17 6 9.4474 -8.0259 3.7330 18 6 9.6293 -9.2858 4.2630 19 6 8.5939 -9.9150 4.9319 20 6 8.7991 -11.2947 5.5026 21 8 9.7799 -11.2398 6.5404 22 14 7.1905 -11.9234 6.2009 23 6 7.3728 -9.2817 5.0845 24 6 7.1754 -8.0217 4.5602 25 6 4.3256 -2.1081 1.2327 26 1 -0.3634 0.5969 0.8364 27 1 -0.3634 0.4259 -0.9353 28 1 -0.3633 -1.0229 0.0987 29 1 1.7610 -1.7368 1.6665 30 1 1.7609 -0.1170 2.4043 31 1 3.3818 -1.9388 3.6790 32 1 4.5188 -0.5312 3.8364 33 1 4.7088 -3.9051 3.5101 34 1 6.0179 -5.9106 3.9828 35 1 8.8166 -5.5452 2.7875 36 1 10.2550 -7.5378 3.2075 37 1 10.5806 -9.7849 4.1515 38 1 9.1406 -11.9665 4.7151 39 1 9.5419 -10.6591 7.2762 40 1 7.3796 -13.2830 6.7674 41 1 6.6980 -10.9992 7.2537 42 1 6.5711 -9.7773 5.6117 43 1 6.2208 -7.5302 4.6765 44 1 4.8691 -1.9583 0.2998 45 1 3.6287 -2.9449 1.1878 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:00 Heat of formation + Delta-G solvation = -71.030212 kcal Electronic energy + Delta-G solvation = -27052.144899 eV Core-core repulsion = 22936.670330 eV Total energy + Delta-G solvation = -4115.474569 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.122 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.26920 -40.60466 -39.54898 -37.96158 -37.90125 -36.98916 -35.09002 -34.85768 -32.21590 -31.49846 -30.83893 -30.06358 -27.25379 -26.73554 -24.92511 -24.01543 -23.08931 -21.89456 -21.11973 -20.16543 -19.77861 -18.87676 -18.16058 -17.89001 -17.43925 -17.05022 -16.96588 -16.67662 -16.54049 -16.22914 -16.10158 -15.90029 -15.75032 -15.16141 -14.97120 -14.59438 -14.52190 -14.14402 -14.02700 -13.89577 -13.81928 -13.60029 -13.43965 -13.31388 -13.17852 -13.06939 -13.03310 -12.99156 -12.61336 -12.27963 -12.08195 -12.01946 -11.93375 -11.58839 -11.48391 -11.35149 -11.13025 -10.96023 -10.60924 -10.09056 -9.97747 -9.24874 -4.91263 -0.89435 -0.55181 0.39935 0.88399 1.31130 1.59885 1.92882 1.97312 2.19344 2.22154 2.78478 2.80881 3.12641 3.38286 3.40384 3.45521 3.55219 3.66068 3.70095 3.76743 3.81682 3.94808 4.05214 4.10887 4.15736 4.20677 4.22261 4.35435 4.36265 4.45549 4.55038 4.58511 4.73551 4.76213 4.83005 4.85053 4.96619 4.98076 4.99827 5.04589 5.09504 5.17150 5.22411 5.38710 5.48099 5.56791 5.60339 5.90410 6.47057 6.56676 7.23543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.403 3.597 3 O -0.996 6.996 4 O -0.989 6.989 5 C -0.578 4.578 6 C -0.112 4.112 7 H 0.094 0.906 8 C -0.110 4.110 9 C 0.110 3.890 10 H 0.090 0.910 11 N -0.698 5.698 12 C 0.539 3.461 13 O -0.596 6.596 14 C -0.206 4.206 15 C -0.024 4.024 16 C -0.080 4.080 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.089 4.089 21 O -0.550 6.550 22 Si 0.773 3.227 23 C -0.123 4.123 24 C -0.094 4.094 25 C -0.158 4.158 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.155 0.845 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.421 0.579 34 H 0.168 0.832 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.386 0.614 40 H -0.308 1.308 41 H -0.276 1.276 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.054 0.946 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.469 -3.057 5.641 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.993 6.993 4 O -0.986 6.986 5 C -0.709 4.709 6 C -0.132 4.132 7 H 0.112 0.888 8 C -0.149 4.149 9 C 0.004 3.996 10 H 0.108 0.892 11 N -0.349 5.349 12 C 0.329 3.671 13 O -0.479 6.479 14 C -0.226 4.226 15 C -0.044 4.044 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.110 4.110 20 C -0.198 4.198 21 O -0.358 6.358 22 Si 0.678 3.322 23 C -0.140 4.140 24 C -0.111 4.111 25 C -0.196 4.196 26 H 0.172 0.828 27 H 0.145 0.855 28 H 0.173 0.827 29 H 0.187 0.813 30 H 0.189 0.811 31 H 0.143 0.857 32 H 0.104 0.896 33 H 0.260 0.740 34 H 0.186 0.814 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.236 0.764 40 H -0.236 1.236 41 H -0.202 1.202 42 H 0.167 0.833 43 H 0.177 0.823 44 H 0.073 0.927 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.390 -3.012 4.840 10.984 hybrid contribution 0.579 0.365 1.042 1.247 sum -8.811 -2.647 5.882 10.919 Atomic orbital electron populations 1.30127 1.22365 1.13918 1.13034 1.07910 0.79843 0.74410 0.78631 1.93551 1.81028 1.37144 1.87623 1.93556 1.80787 1.67402 1.56846 1.30124 1.03194 1.16439 1.21157 1.22090 0.92423 0.98694 1.00000 0.88805 1.23340 0.97046 0.99546 0.95013 1.22485 0.98366 0.83724 0.95016 0.89220 1.45704 1.14205 1.17755 1.57207 1.18870 0.82356 0.86936 0.78891 1.90820 1.43844 1.68390 1.44865 1.23030 1.00118 0.94244 1.05196 1.22366 0.97226 0.91956 0.92825 1.19118 0.94940 0.93847 1.00137 1.21611 0.96955 0.95012 0.98676 1.21081 0.99281 0.94914 0.97230 1.20535 0.94612 0.96885 0.98931 1.25346 1.04076 0.96619 0.93745 1.86586 1.45364 1.70543 1.33309 0.94013 0.77980 0.75562 0.84607 1.21227 0.96771 0.95484 1.00510 1.21656 0.99298 0.94560 0.95590 1.23754 0.99540 0.98443 0.97886 0.82779 0.85523 0.82659 0.81267 0.81079 0.85717 0.89568 0.74020 0.81446 0.86344 0.84813 0.85376 0.85949 0.76447 1.23629 1.20218 0.83297 0.82310 0.92711 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.35 10.62 113.37 1.20 8.56 16 2 S 2.40 -7.58 5.35 -56.49 -0.30 -7.88 16 3 O -1.00 -7.04 18.10 -127.37 -2.31 -9.35 16 4 O -0.99 -6.41 18.10 -127.37 -2.30 -8.72 16 5 C -0.58 6.72 5.65 71.98 0.41 7.13 16 6 C -0.11 0.56 3.65 -10.27 -0.04 0.52 16 7 H 0.09 -0.16 8.13 -2.39 -0.02 -0.18 16 8 C -0.11 0.93 7.39 31.12 0.23 1.16 16 9 C 0.11 -0.14 4.24 45.52 0.19 0.05 16 10 H 0.09 0.45 7.46 -2.39 -0.02 0.43 16 11 N -0.70 2.37 5.35 -444.27 -2.38 -0.01 16 12 C 0.54 2.06 7.74 86.38 0.67 2.72 16 13 O -0.60 -8.62 15.83 -4.32 -0.07 -8.68 16 14 C -0.21 0.43 9.41 23.62 0.22 0.65 16 15 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 16 C -0.08 0.05 5.87 -20.15 -0.12 -0.06 16 17 C -0.10 -0.04 9.80 22.58 0.22 0.18 16 18 C -0.11 -0.03 9.66 22.23 0.21 0.18 16 19 C -0.11 0.18 5.36 -19.79 -0.11 0.07 16 20 C -0.09 0.17 2.80 71.24 0.20 0.37 16 21 O -0.55 -0.97 12.83 -148.98 -1.91 -2.88 16 22 Si 0.77 -3.17 29.88 68.60 2.05 -1.12 16 23 C -0.12 0.54 8.65 22.23 0.19 0.73 16 24 C -0.09 0.43 9.41 22.58 0.21 0.64 16 25 C -0.16 0.21 7.43 31.12 0.23 0.45 16 26 H 0.15 -2.49 8.14 -2.39 -0.02 -2.51 16 27 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.16 -2.55 8.14 -2.39 -0.02 -2.57 16 29 H 0.17 -3.09 7.85 -2.39 -0.02 -3.11 16 30 H 0.17 -3.07 8.14 -2.39 -0.02 -3.09 16 31 H 0.12 -1.82 8.08 -2.39 -0.02 -1.83 16 32 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.42 -4.90 8.71 -92.71 -0.81 -5.71 16 34 H 0.17 -1.76 6.07 -2.91 -0.02 -1.78 16 35 H 0.12 0.52 7.52 -2.91 -0.02 0.50 16 36 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 37 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 38 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.39 -1.55 8.70 -74.05 -0.64 -2.19 16 40 H -0.31 -1.38 7.11 99.48 0.71 -0.67 16 41 H -0.28 0.41 6.99 99.48 0.70 1.11 16 42 H 0.15 -1.29 4.81 -2.91 -0.01 -1.30 16 43 H 0.16 -1.72 6.17 -2.91 -0.02 -1.74 16 44 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.11 -0.63 7.90 -2.39 -0.02 -0.64 16 Total: 0.00 -39.24 390.99 -3.46 -42.70 By element: Atomic # 1 Polarization: -27.23 SS G_CDS: -0.40 Total: -27.62 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 4.16 Total: 23.56 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -2.38 Total: -0.01 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -6.59 Total: -29.62 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.05 Total: -1.12 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -0.30 Total: -7.88 kcal Total: -39.24 -3.46 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.334 kcal (2) G-P(sol) polarization free energy of solvation -39.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds