Wall clock time and date at job start Sun Mar 7 2021 06:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39287 * 121.03005 * 2 1 4 4 C 1.46503 * 134.19802 * 359.94927 * 3 2 1 5 5 C 1.50696 * 126.59757 * 0.26951 * 4 3 2 6 6 O 1.42908 * 109.47258 * 75.02829 * 5 4 3 7 7 Si 1.86291 * 109.47315 * 195.02709 * 5 4 3 8 8 C 1.34174 * 106.80311 * 180.31503 * 4 3 2 9 9 N 1.36950 * 109.95204 * 0.02562 * 8 4 3 10 10 C 1.37155 * 110.11621 * 359.97438 * 9 8 4 11 11 N 1.32820 * 132.97375 * 180.02562 * 10 9 8 12 12 C 1.31307 * 121.89341 * 179.97438 * 11 10 9 13 13 C 1.39754 * 121.03539 * 179.75230 * 2 1 3 14 14 C 1.47659 * 120.45113 * 359.97438 * 13 2 1 15 15 O 1.21584 * 120.00158 * 353.76424 * 14 13 2 16 16 N 1.34774 * 120.00228 * 173.76596 * 14 13 2 17 17 C 1.46500 * 120.00607 * 179.72016 * 16 14 13 18 18 H 1.08999 * 112.84741 * 24.08291 * 17 16 14 19 19 C 1.53781 * 113.61768 * 155.27552 * 17 16 14 20 20 C 1.53771 * 87.07969 * 139.98593 * 19 17 16 21 21 H 1.09004 * 113.61622 * 89.20506 * 20 19 17 22 22 C 1.53006 * 113.61357 * 220.01875 * 20 19 17 23 23 S 1.81395 * 109.47203 * 185.00069 * 22 20 19 24 24 C 1.81403 * 101.91967 * 180.02562 * 23 22 20 25 25 O 1.42101 * 108.58259 * 294.48579 * 23 22 20 26 26 O 1.42098 * 108.57813 * 65.51548 * 23 22 20 27 27 C 1.53777 * 87.08536 * 334.56762 * 20 19 17 28 28 H 1.08991 * 109.46974 * 263.96567 * 1 2 3 29 29 H 1.09003 * 109.47082 * 23.97050 * 1 2 3 30 30 H 1.09001 * 109.46731 * 143.96557 * 1 2 3 31 31 H 1.08999 * 109.47509 * 315.03238 * 5 4 3 32 32 H 0.96689 * 113.99995 * 180.02562 * 6 5 4 33 33 H 1.48505 * 110.00295 * 300.00461 * 7 5 4 34 34 H 1.48504 * 110.00193 * 61.32001 * 7 5 4 35 35 H 1.08002 * 125.02442 * 179.97438 * 8 4 3 36 36 H 0.97001 * 124.94442 * 180.02562 * 9 8 4 37 37 H 1.07997 * 119.30837 * 179.97438 * 12 11 10 38 38 H 0.97009 * 119.99883 * 359.97438 * 16 14 13 39 39 H 1.09002 * 113.61443 * 254.53723 * 19 17 16 40 40 H 1.09001 * 113.61095 * 25.43246 * 19 17 16 41 41 H 1.09001 * 109.47102 * 305.00600 * 22 20 19 42 42 H 1.09005 * 109.46862 * 65.00291 * 22 20 19 43 43 H 1.09003 * 109.47445 * 60.00451 * 24 23 22 44 44 H 1.09006 * 109.47268 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47189 * 299.99719 * 24 23 22 46 46 H 1.08999 * 113.61367 * 270.88804 * 27 20 19 47 47 H 1.09004 * 113.61723 * 139.98031 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6102 -0.0009 5 6 0.4526 3.1704 0.0034 6 8 -0.1142 3.0266 1.3074 7 14 0.5050 4.9753 -0.4551 8 6 2.9946 3.3127 -0.0074 9 7 4.0668 2.4607 -0.0113 10 6 3.6348 1.1589 -0.0068 11 7 4.2720 -0.0064 -0.0074 12 6 3.6267 -1.1500 -0.0017 13 6 2.2276 -1.1975 0.0052 14 6 1.5227 -2.4949 0.0114 15 8 0.3128 -2.5290 0.1263 16 7 2.2204 -3.6415 -0.1104 17 6 1.5218 -4.9292 -0.0982 18 1 0.4782 -4.8473 -0.4019 19 6 2.2867 -6.0520 -0.8185 20 6 1.8300 -6.9838 0.3163 21 1 0.8710 -7.4658 0.1263 22 6 2.9091 -7.9676 0.7732 23 16 2.2103 -9.1034 2.0029 24 6 3.6357 -10.1550 2.3943 25 8 1.8659 -8.3585 3.1631 26 8 1.2187 -9.9009 1.3707 27 6 1.7268 -5.7290 1.1992 28 1 -0.3633 -0.1080 1.0219 29 1 -0.3633 0.9391 -0.4175 30 1 -0.3633 -0.8311 -0.6046 31 1 -0.1578 2.6294 -0.7196 32 1 -1.0161 3.3664 1.3839 33 1 1.3342 5.7241 0.5231 34 1 1.0628 5.1361 -1.8220 35 1 3.0596 4.3908 -0.0101 36 1 4.9964 2.7375 -0.0158 37 1 4.1870 -2.0732 -0.0029 38 1 3.1858 -3.6144 -0.2025 39 1 1.8684 -6.3110 -1.7912 40 1 3.3651 -5.8962 -0.8484 41 1 3.2686 -8.5367 -0.0842 42 1 3.7384 -7.4168 1.2172 43 1 4.4433 -9.5396 2.7908 44 1 3.3462 -10.8972 3.1383 45 1 3.9741 -10.6598 1.4895 46 1 2.6521 -5.4849 1.7209 47 1 0.8564 -5.7272 1.8554 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:41 Heat of formation + Delta-G solvation = -24.802936 kcal Electronic energy + Delta-G solvation = -32308.723997 eV Core-core repulsion = 27780.638411 eV Total energy + Delta-G solvation = -4528.085586 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.128 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -42.85467 -41.29299 -39.86512 -38.54309 -37.96088 -37.70426 -36.99561 -35.31206 -34.68277 -32.08858 -31.67968 -30.81185 -30.16986 -28.79871 -26.87068 -26.52151 -25.10228 -24.23908 -23.35002 -21.75038 -20.96152 -20.34437 -19.89968 -19.24914 -18.64881 -18.38100 -17.97618 -17.64340 -17.43152 -17.12068 -16.89975 -16.53949 -16.38408 -16.21044 -15.73347 -15.45387 -15.27550 -15.14384 -14.82290 -14.71387 -14.38346 -14.26750 -14.17675 -13.92791 -13.84560 -13.68710 -13.60778 -13.55741 -13.24137 -13.23541 -13.05032 -12.96298 -12.88529 -12.67178 -12.61193 -12.15672 -12.05770 -11.95451 -11.56552 -11.26356 -11.10317 -10.99962 -10.32743 -10.16047 -10.05140 -9.59612 -9.14994 -5.07884 -1.08137 -0.23461 -0.06606 1.21610 1.31247 1.57554 1.60812 1.69012 1.88184 1.91362 2.08800 2.59011 2.83053 2.90869 3.20950 3.25284 3.28039 3.36400 3.47815 3.52001 3.62087 3.68978 3.73301 3.76725 3.78662 3.81691 3.93395 4.05179 4.07633 4.09604 4.26807 4.29343 4.37155 4.54777 4.58309 4.60895 4.62617 4.64381 4.78004 4.83296 4.97136 4.99338 5.05046 5.11643 5.19373 5.35077 5.46637 5.56394 5.75707 6.07449 6.46873 6.66901 6.83752 7.24298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.087 3.913 3 C -0.148 4.148 4 C -0.132 4.132 5 C -0.041 4.041 6 O -0.543 6.543 7 Si 0.686 3.314 8 C 0.063 3.937 9 N -0.569 5.569 10 C 0.309 3.691 11 N -0.504 5.504 12 C 0.181 3.819 13 C -0.235 4.235 14 C 0.574 3.426 15 O -0.527 6.527 16 N -0.719 5.719 17 C 0.124 3.876 18 H 0.122 0.878 19 C -0.131 4.131 20 C -0.103 4.103 21 H 0.111 0.889 22 C -0.600 4.600 23 S 2.418 3.582 24 C -0.659 4.659 25 O -0.933 6.933 26 O -0.938 6.938 27 C -0.153 4.153 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.381 0.619 33 H -0.251 1.251 34 H -0.255 1.255 35 H 0.177 0.823 36 H 0.426 0.574 37 H 0.162 0.838 38 H 0.399 0.601 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.128 0.872 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.475 2.046 -3.220 5.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 C -0.154 4.154 4 C -0.139 4.139 5 C -0.152 4.152 6 O -0.349 6.349 7 Si 0.587 3.413 8 C -0.063 4.063 9 N -0.175 5.175 10 C 0.076 3.924 11 N -0.217 5.217 12 C 0.012 3.988 13 C -0.242 4.242 14 C 0.362 3.638 15 O -0.404 6.404 16 N -0.370 5.370 17 C 0.020 3.980 18 H 0.140 0.860 19 C -0.170 4.170 20 C -0.123 4.123 21 H 0.129 0.871 22 C -0.729 4.729 23 S 2.600 3.400 24 C -0.808 4.808 25 O -0.930 6.930 26 O -0.935 6.935 27 C -0.192 4.192 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.228 0.772 33 H -0.176 1.176 34 H -0.179 1.179 35 H 0.194 0.806 36 H 0.264 0.736 37 H 0.179 0.821 38 H 0.235 0.765 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.874 2.565 -2.909 5.481 hybrid contribution 1.588 -0.443 -0.306 1.676 sum 5.462 2.122 -3.214 6.683 Atomic orbital electron populations 1.21175 0.88694 1.03567 1.04412 1.19919 0.97240 0.89071 0.85911 1.19447 0.92814 0.93390 1.09796 1.19545 0.93196 0.90654 1.10504 1.24087 0.91430 1.10748 0.88891 1.86547 1.33858 1.85939 1.28571 0.94941 0.90411 0.76186 0.79799 1.21619 0.85354 0.95605 1.03729 1.41458 1.09485 1.02732 1.63788 1.18464 0.89303 0.85831 0.98832 1.66433 1.40516 0.95950 1.18760 1.22496 0.90114 0.94390 0.91776 1.20425 0.94745 0.93768 1.15273 1.17886 0.86861 0.83266 0.75810 1.90761 1.13550 1.87025 1.49093 1.45850 1.10561 1.05421 1.75173 1.22498 0.98581 0.80530 0.96436 0.85977 1.23381 1.01241 0.94198 0.98220 1.22076 0.97689 0.93708 0.98789 0.87089 1.30301 1.10141 1.14572 1.17868 1.07962 0.77854 0.77315 0.76912 1.30307 1.21317 1.16778 1.12422 1.93626 1.81476 1.71047 1.46868 1.93622 1.54293 1.68631 1.76975 1.23709 1.04287 0.93860 0.97320 0.89310 0.91372 0.88441 0.90606 0.77156 1.17581 1.17901 0.80591 0.73551 0.82065 0.76525 0.89806 0.88947 0.84516 0.84771 0.85328 0.85111 0.85331 0.88821 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.33 8.68 36.01 0.31 -0.02 16 2 C 0.09 0.32 5.98 -103.66 -0.62 -0.30 16 3 C -0.15 -0.57 6.16 -105.12 -0.65 -1.21 16 4 C -0.13 -0.31 5.61 -102.73 -0.58 -0.88 16 5 C -0.04 0.01 2.07 36.00 0.07 0.08 16 6 O -0.54 -0.06 12.86 -35.23 -0.45 -0.52 16 7 Si 0.69 -1.41 30.80 -169.99 -5.24 -6.64 16 8 C 0.06 0.06 10.44 -16.70 -0.17 -0.11 16 9 N -0.57 -0.59 6.04 -12.12 -0.07 -0.66 16 10 C 0.31 1.09 8.42 -155.71 -1.31 -0.22 16 11 N -0.50 -1.64 10.37 -11.96 -0.12 -1.76 16 12 C 0.18 0.23 10.67 -17.12 -0.18 0.05 16 13 C -0.23 -0.60 5.89 -104.83 -0.62 -1.22 16 14 C 0.57 1.40 7.72 -12.42 -0.10 1.31 16 15 O -0.53 -2.80 13.10 5.29 0.07 -2.73 16 16 N -0.72 0.59 5.31 -54.02 -0.29 0.30 16 17 C 0.12 -0.12 4.24 -67.12 -0.28 -0.40 16 18 H 0.12 0.07 7.47 -51.93 -0.39 -0.32 16 19 C -0.13 0.42 7.39 -25.92 -0.19 0.23 16 20 C -0.10 0.23 3.66 -89.81 -0.33 -0.09 16 21 H 0.11 -0.21 8.13 -51.93 -0.42 -0.64 16 22 C -0.60 2.66 5.64 37.16 0.21 2.87 16 23 S 2.42 -3.83 5.35 -107.50 -0.58 -4.41 16 24 C -0.66 2.91 10.62 101.05 1.07 3.98 16 25 O -0.93 -2.36 18.10 -57.83 -1.05 -3.40 16 26 O -0.94 -2.50 18.10 -57.83 -1.05 -3.55 16 27 C -0.15 0.14 7.43 -25.92 -0.19 -0.05 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.08 5.06 -51.93 -0.26 -0.18 16 30 H 0.10 0.35 5.96 -51.93 -0.31 0.04 16 31 H 0.08 -0.10 6.03 -51.93 -0.31 -0.41 16 32 H 0.38 -1.86 8.74 45.56 0.40 -1.46 16 33 H -0.25 -0.09 7.04 56.52 0.40 0.30 16 34 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 35 H 0.18 -0.25 6.31 -52.49 -0.33 -0.59 16 36 H 0.43 -0.75 8.96 -40.82 -0.37 -1.12 16 37 H 0.16 -0.43 6.43 -52.49 -0.34 -0.77 16 38 H 0.40 -1.43 6.80 -40.82 -0.28 -1.71 16 39 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 40 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 41 H 0.14 -0.91 8.14 -51.92 -0.42 -1.33 16 42 H 0.13 -0.88 7.84 -51.92 -0.41 -1.29 16 43 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 44 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 45 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 46 H 0.09 -0.18 7.90 -51.93 -0.41 -0.59 16 47 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 LS Contribution 395.47 15.07 5.96 5.96 Total: 0.00 -16.23 395.47 -12.37 -28.60 By element: Atomic # 1 Polarization: -9.18 SS G_CDS: -6.01 Total: -15.19 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -3.55 Total: 4.00 kcal Atomic # 7 Polarization: -1.64 SS G_CDS: -0.48 Total: -2.12 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -2.48 Total: -10.19 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.24 Total: -6.64 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -0.58 Total: -4.41 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -16.23 -12.37 -28.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.796 kcal (2) G-P(sol) polarization free energy of solvation -16.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds