Wall clock time and date at job start Sun Mar 7 2021 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39287 * 121.03005 * 2 1 4 4 C 1.46503 * 134.19802 * 359.94927 * 3 2 1 5 5 C 1.50696 * 126.59757 * 0.26951 * 4 3 2 6 6 O 1.42908 * 109.47258 * 75.02829 * 5 4 3 7 7 Si 1.86291 * 109.47315 * 195.02709 * 5 4 3 8 8 C 1.34174 * 106.80311 * 180.31503 * 4 3 2 9 9 N 1.36950 * 109.95204 * 0.02562 * 8 4 3 10 10 C 1.37155 * 110.11621 * 359.97438 * 9 8 4 11 11 N 1.32820 * 132.97375 * 180.02562 * 10 9 8 12 12 C 1.31307 * 121.89341 * 179.97438 * 11 10 9 13 13 C 1.39754 * 121.03539 * 179.75230 * 2 1 3 14 14 C 1.47659 * 120.45113 * 359.97438 * 13 2 1 15 15 O 1.21584 * 120.00158 * 353.76424 * 14 13 2 16 16 N 1.34774 * 120.00228 * 173.76596 * 14 13 2 17 17 C 1.46500 * 120.00607 * 179.72016 * 16 14 13 18 18 H 1.08999 * 112.84741 * 24.08291 * 17 16 14 19 19 C 1.53781 * 113.61768 * 155.27552 * 17 16 14 20 20 C 1.53771 * 87.07969 * 139.98593 * 19 17 16 21 21 H 1.09004 * 113.61622 * 89.20506 * 20 19 17 22 22 C 1.53006 * 113.61357 * 220.01875 * 20 19 17 23 23 S 1.81395 * 109.47203 * 185.00069 * 22 20 19 24 24 C 1.81403 * 101.91967 * 180.02562 * 23 22 20 25 25 O 1.42101 * 108.58259 * 294.48579 * 23 22 20 26 26 O 1.42098 * 108.57813 * 65.51548 * 23 22 20 27 27 C 1.53777 * 87.08536 * 334.56762 * 20 19 17 28 28 H 1.08991 * 109.46974 * 263.96567 * 1 2 3 29 29 H 1.09003 * 109.47082 * 23.97050 * 1 2 3 30 30 H 1.09001 * 109.46731 * 143.96557 * 1 2 3 31 31 H 1.08999 * 109.47509 * 315.03238 * 5 4 3 32 32 H 0.96689 * 113.99995 * 180.02562 * 6 5 4 33 33 H 1.48505 * 110.00295 * 300.00461 * 7 5 4 34 34 H 1.48504 * 110.00193 * 61.32001 * 7 5 4 35 35 H 1.08002 * 125.02442 * 179.97438 * 8 4 3 36 36 H 0.97001 * 124.94442 * 180.02562 * 9 8 4 37 37 H 1.07997 * 119.30837 * 179.97438 * 12 11 10 38 38 H 0.97009 * 119.99883 * 359.97438 * 16 14 13 39 39 H 1.09002 * 113.61443 * 254.53723 * 19 17 16 40 40 H 1.09001 * 113.61095 * 25.43246 * 19 17 16 41 41 H 1.09001 * 109.47102 * 305.00600 * 22 20 19 42 42 H 1.09005 * 109.46862 * 65.00291 * 22 20 19 43 43 H 1.09003 * 109.47445 * 60.00451 * 24 23 22 44 44 H 1.09006 * 109.47268 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47189 * 299.99719 * 24 23 22 46 46 H 1.08999 * 113.61367 * 270.88804 * 27 20 19 47 47 H 1.09004 * 113.61723 * 139.98031 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8515 2.6102 -0.0009 5 6 0.4526 3.1704 0.0034 6 8 -0.1142 3.0266 1.3074 7 14 0.5050 4.9753 -0.4551 8 6 2.9946 3.3127 -0.0074 9 7 4.0668 2.4607 -0.0113 10 6 3.6348 1.1589 -0.0068 11 7 4.2720 -0.0064 -0.0074 12 6 3.6267 -1.1500 -0.0017 13 6 2.2276 -1.1975 0.0052 14 6 1.5227 -2.4949 0.0114 15 8 0.3128 -2.5290 0.1263 16 7 2.2204 -3.6415 -0.1104 17 6 1.5218 -4.9292 -0.0982 18 1 0.4782 -4.8473 -0.4019 19 6 2.2867 -6.0520 -0.8185 20 6 1.8300 -6.9838 0.3163 21 1 0.8710 -7.4658 0.1263 22 6 2.9091 -7.9676 0.7732 23 16 2.2103 -9.1034 2.0029 24 6 3.6357 -10.1550 2.3943 25 8 1.8659 -8.3585 3.1631 26 8 1.2187 -9.9009 1.3707 27 6 1.7268 -5.7290 1.1992 28 1 -0.3633 -0.1080 1.0219 29 1 -0.3633 0.9391 -0.4175 30 1 -0.3633 -0.8311 -0.6046 31 1 -0.1578 2.6294 -0.7196 32 1 -1.0161 3.3664 1.3839 33 1 1.3342 5.7241 0.5231 34 1 1.0628 5.1361 -1.8220 35 1 3.0596 4.3908 -0.0101 36 1 4.9964 2.7375 -0.0158 37 1 4.1870 -2.0732 -0.0029 38 1 3.1858 -3.6144 -0.2025 39 1 1.8684 -6.3110 -1.7912 40 1 3.3651 -5.8962 -0.8484 41 1 3.2686 -8.5367 -0.0842 42 1 3.7384 -7.4168 1.2172 43 1 4.4433 -9.5396 2.7908 44 1 3.3462 -10.8972 3.1383 45 1 3.9741 -10.6598 1.4895 46 1 2.6521 -5.4849 1.7209 47 1 0.8564 -5.7272 1.8554 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:01:40 Heat of formation + Delta-G solvation = -35.157628 kcal Electronic energy + Delta-G solvation = -32309.173010 eV Core-core repulsion = 27780.638411 eV Total energy + Delta-G solvation = -4528.534599 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.128 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.96273 -41.33526 -39.86408 -38.66135 -37.95668 -37.67979 -36.98559 -35.39987 -34.80619 -32.16413 -31.63073 -30.64895 -29.97687 -28.95731 -26.71399 -26.54162 -25.16226 -24.31544 -23.37766 -21.86010 -20.86042 -20.39322 -19.78731 -19.36078 -18.72175 -18.33165 -17.91580 -17.62113 -17.40114 -17.00277 -16.92814 -16.62112 -16.45786 -16.12751 -15.81760 -15.48015 -15.30877 -15.14673 -14.78175 -14.66613 -14.25689 -14.08600 -14.03087 -13.89741 -13.81419 -13.74414 -13.57791 -13.41757 -13.36325 -13.20457 -13.07691 -12.99366 -12.94945 -12.60318 -12.58889 -11.99020 -11.93596 -11.92309 -11.45609 -11.27204 -11.19587 -11.02758 -10.49201 -10.13760 -10.10423 -9.71368 -9.25948 -4.91776 -0.88906 -0.42508 -0.18111 1.23053 1.33221 1.52065 1.72061 1.75233 1.93185 1.98035 2.05677 2.67607 2.78638 3.13199 3.21035 3.33501 3.40114 3.46350 3.47344 3.59667 3.63657 3.72208 3.79376 3.83899 4.02305 4.05118 4.08927 4.10679 4.18764 4.24666 4.28360 4.36819 4.53620 4.56707 4.67439 4.73184 4.75782 4.78379 4.84803 4.92860 4.99286 5.00395 5.07210 5.08540 5.18365 5.19044 5.35165 5.56415 5.61257 6.06889 6.47383 6.71812 6.97544 7.15710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.066 3.934 3 C -0.169 4.169 4 C -0.158 4.158 5 C -0.057 4.057 6 O -0.564 6.564 7 Si 0.785 3.215 8 C 0.065 3.935 9 N -0.561 5.561 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.185 3.815 13 C -0.241 4.241 14 C 0.571 3.429 15 O -0.565 6.565 16 N -0.700 5.700 17 C 0.114 3.886 18 H 0.098 0.902 19 C -0.112 4.112 20 C -0.111 4.111 21 H 0.097 0.903 22 C -0.579 4.579 23 S 2.404 3.596 24 C -0.644 4.644 25 O -0.989 6.989 26 O -0.995 6.995 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.400 0.600 33 H -0.281 1.281 34 H -0.286 1.286 35 H 0.199 0.801 36 H 0.437 0.563 37 H 0.201 0.799 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.172 0.828 42 H 0.168 0.832 43 H 0.154 0.846 44 H 0.126 0.874 45 H 0.154 0.846 46 H 0.109 0.891 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.222 2.055 -4.183 7.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.058 3.942 3 C -0.176 4.176 4 C -0.165 4.165 5 C -0.166 4.166 6 O -0.374 6.374 7 Si 0.688 3.312 8 C -0.061 4.061 9 N -0.168 5.168 10 C 0.056 3.944 11 N -0.229 5.229 12 C 0.016 3.984 13 C -0.249 4.249 14 C 0.359 3.641 15 O -0.445 6.445 16 N -0.352 5.352 17 C 0.010 3.990 18 H 0.116 0.884 19 C -0.151 4.151 20 C -0.131 4.131 21 H 0.115 0.885 22 C -0.711 4.711 23 S 2.593 3.407 24 C -0.796 4.796 25 O -0.986 6.986 26 O -0.992 6.992 27 C -0.198 4.198 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.251 0.749 33 H -0.207 1.207 34 H -0.213 1.213 35 H 0.216 0.784 36 H 0.278 0.722 37 H 0.218 0.782 38 H 0.254 0.746 39 H 0.107 0.893 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.186 0.814 43 H 0.172 0.828 44 H 0.145 0.855 45 H 0.172 0.828 46 H 0.128 0.872 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.595 2.542 -3.848 8.048 hybrid contribution 0.795 -0.470 0.000 0.924 sum 7.390 2.072 -3.848 8.586 Atomic orbital electron populations 1.21038 0.88755 1.03645 1.03400 1.20140 0.97565 0.89833 0.86706 1.19729 0.93345 0.94185 1.10361 1.20014 0.94903 0.90354 1.11210 1.24429 0.90453 1.12780 0.88901 1.86494 1.35562 1.86497 1.28818 0.93760 0.88715 0.72656 0.76075 1.22007 0.85009 0.96488 1.02635 1.41502 1.10241 1.02007 1.63065 1.18762 0.89579 0.86692 0.99400 1.66535 1.40742 0.96275 1.19354 1.23079 0.89764 0.95278 0.90248 1.20550 0.95491 0.93452 1.15373 1.17988 0.86495 0.84040 0.75582 1.90746 1.15174 1.87540 1.51049 1.45710 1.11289 1.04541 1.73663 1.22537 0.98151 0.80977 0.97383 0.88375 1.23356 1.02574 0.91552 0.97610 1.22093 0.98244 0.93837 0.98923 0.88497 1.30138 1.09817 1.13440 1.17658 1.07876 0.78719 0.77542 0.76523 1.30140 1.19464 1.16218 1.13740 1.93557 1.83368 1.72305 1.49372 1.93549 1.57921 1.70079 1.77662 1.23773 1.03860 0.95096 0.97081 0.90619 0.90180 0.89636 0.90069 0.74883 1.20744 1.21312 0.78437 0.72152 0.78225 0.74579 0.89291 0.85931 0.81063 0.81420 0.82793 0.85534 0.82788 0.87234 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 8.68 71.24 0.62 -0.28 16 2 C 0.07 0.60 5.98 -19.24 -0.12 0.49 16 3 C -0.17 -1.52 6.16 -20.19 -0.12 -1.65 16 4 C -0.16 -0.87 5.61 -18.64 -0.10 -0.97 16 5 C -0.06 0.00 2.07 71.23 0.15 0.14 16 6 O -0.56 -0.48 12.86 -148.98 -1.92 -2.40 16 7 Si 0.79 -3.50 30.80 68.60 2.11 -1.39 16 8 C 0.07 0.14 10.44 82.97 0.87 1.00 16 9 N -0.56 -1.29 6.04 -192.25 -1.16 -2.45 16 10 C 0.29 2.22 8.42 134.02 1.13 3.34 16 11 N -0.52 -3.31 10.37 -191.76 -1.99 -5.30 16 12 C 0.18 0.41 10.67 85.20 0.91 1.32 16 13 C -0.24 -1.47 5.89 -20.00 -0.12 -1.59 16 14 C 0.57 3.53 7.72 86.73 0.67 4.20 16 15 O -0.56 -7.54 13.10 -3.98 -0.05 -7.59 16 16 N -0.70 1.30 5.31 -443.08 -2.35 -1.05 16 17 C 0.11 -0.16 4.24 45.52 0.19 0.04 16 18 H 0.10 0.36 7.47 -2.39 -0.02 0.34 16 19 C -0.11 0.92 7.39 31.12 0.23 1.15 16 20 C -0.11 0.55 3.66 -10.27 -0.04 0.51 16 21 H 0.10 -0.21 8.13 -2.38 -0.02 -0.23 16 22 C -0.58 6.43 5.64 71.98 0.41 6.83 16 23 S 2.40 -6.49 5.35 -56.49 -0.30 -6.79 16 24 C -0.64 6.90 10.62 113.37 1.20 8.10 16 25 O -0.99 -6.95 18.10 -127.37 -2.30 -9.25 16 26 O -0.99 -7.21 18.10 -127.37 -2.31 -9.51 16 27 C -0.16 0.18 7.43 31.12 0.23 0.41 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.36 5.06 -2.39 -0.01 0.34 16 30 H 0.09 0.87 5.96 -2.39 -0.01 0.86 16 31 H 0.08 -0.15 6.03 -2.39 -0.01 -0.17 16 32 H 0.40 -3.83 8.74 -74.06 -0.65 -4.47 16 33 H -0.28 -0.10 7.04 99.48 0.70 0.60 16 34 H -0.29 -0.22 7.11 99.48 0.71 0.49 16 35 H 0.20 -0.66 6.31 -2.91 -0.02 -0.68 16 36 H 0.44 -1.59 8.96 -92.71 -0.83 -2.42 16 37 H 0.20 -1.48 6.43 -2.91 -0.02 -1.50 16 38 H 0.42 -3.79 6.80 -92.70 -0.63 -4.42 16 39 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.12 -1.70 8.08 -2.39 -0.02 -1.72 16 41 H 0.17 -2.99 8.14 -2.39 -0.02 -3.01 16 42 H 0.17 -2.91 7.84 -2.39 -0.02 -2.93 16 43 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 44 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 45 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 46 H 0.11 -0.52 7.90 -2.39 -0.02 -0.54 16 47 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 Total: 0.00 -42.68 395.47 -5.17 -47.86 By element: Atomic # 1 Polarization: -24.17 SS G_CDS: -1.01 Total: -25.18 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.10 Total: 23.05 kcal Atomic # 7 Polarization: -3.30 SS G_CDS: -5.50 Total: -8.80 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -6.58 Total: -28.75 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.11 Total: -1.39 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -0.30 Total: -6.79 kcal Total: -42.68 -5.17 -47.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.699 kcal (2) G-P(sol) polarization free energy of solvation -42.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds