Wall clock time and date at job start Sun Mar 7 2021 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42090 * 108.58046 * 2 1 4 4 O 1.42106 * 108.57304 * 228.97451 * 2 1 3 5 5 C 1.81402 * 101.92159 * 114.49077 * 2 1 3 6 6 C 1.52991 * 109.47238 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.84801 * 316.19412 * 6 5 2 8 8 C 1.53781 * 113.61611 * 87.50017 * 6 5 2 9 9 C 1.54049 * 87.08031 * 139.97702 * 8 6 5 10 10 H 1.09000 * 113.61076 * 89.06984 * 9 8 6 11 11 N 1.46494 * 113.69866 * 220.05561 * 9 8 6 12 12 C 1.34779 * 119.99525 * 252.42298 * 11 9 8 13 13 O 1.21514 * 120.00539 * 359.97438 * 12 11 9 14 14 C 1.48175 * 119.99785 * 180.02562 * 12 11 9 15 15 N 1.32717 * 119.72065 * 359.72417 * 14 12 11 16 16 C 1.31521 * 121.64036 * 179.75832 * 15 14 12 17 17 C 1.38554 * 120.90527 * 0.51709 * 16 15 14 18 18 C 1.50701 * 120.32819 * 179.72304 * 17 16 15 19 19 O 1.42895 * 109.47314 * 245.02687 * 18 17 16 20 20 Si 1.86306 * 109.46844 * 5.02760 * 18 17 16 21 21 C 1.38628 * 119.35080 * 359.75176 * 17 16 15 22 22 C 1.38585 * 118.48705 * 359.97438 * 21 17 16 23 23 C 1.53781 * 113.61529 * 184.99823 * 6 5 2 24 24 H 1.09008 * 109.46589 * 305.51561 * 1 2 3 25 25 H 1.08996 * 109.47107 * 65.50666 * 1 2 3 26 26 H 1.08995 * 109.47335 * 185.51323 * 1 2 3 27 27 H 1.08997 * 109.46843 * 59.99324 * 5 2 1 28 28 H 1.09002 * 109.46745 * 299.99847 * 5 2 1 29 29 H 1.09005 * 113.61471 * 254.53285 * 8 6 5 30 30 H 1.08996 * 113.61178 * 25.34627 * 8 6 5 31 31 H 0.97000 * 120.00537 * 72.42383 * 11 9 8 32 32 H 1.08003 * 119.54700 * 180.27233 * 16 15 14 33 33 H 1.09004 * 109.47213 * 125.02581 * 18 17 16 34 34 H 0.96706 * 114.00447 * 179.97438 * 19 18 17 35 35 H 1.48505 * 109.99664 * 178.67928 * 20 18 17 36 36 H 1.48500 * 109.99873 * 299.99630 * 20 18 17 37 37 H 1.08005 * 120.75704 * 180.02562 * 21 17 16 38 38 H 1.08005 * 120.47033 * 179.97438 * 22 21 17 39 39 H 1.09002 * 113.61445 * 334.56787 * 23 6 5 40 40 H 1.09002 * 113.61408 * 105.38518 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3468 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7054 -0.8197 1.7979 7 1 4.2200 -1.1779 0.9062 8 6 4.3248 0.4528 2.3994 9 6 5.2306 -0.4757 3.2304 10 1 6.1624 -0.7391 2.7299 11 7 5.4320 -0.0224 4.6089 12 6 6.6218 0.4883 4.9831 13 8 7.5275 0.5724 4.1774 14 6 6.8258 0.9463 6.3775 15 7 5.8314 0.8561 7.2518 16 6 5.9723 1.2468 8.4997 17 6 7.1700 1.7806 8.9473 18 6 7.3152 2.2299 10.3785 19 8 7.5173 3.6440 10.4156 20 14 5.7694 1.7984 11.3246 21 6 8.2333 1.8979 8.0657 22 6 8.0580 1.4729 6.7583 23 6 4.1316 -1.5419 3.0870 24 1 -0.3633 0.5971 0.8366 25 1 -0.3633 0.4260 -0.9351 26 1 -0.3634 -1.0229 0.0987 27 1 1.7610 -1.7370 1.6664 28 1 1.7611 -0.1172 2.4042 29 1 4.8684 1.0587 1.6744 30 1 3.6270 1.0362 3.0000 31 1 4.7092 -0.0898 5.2522 32 1 5.1418 1.1539 9.1839 33 1 8.1704 1.7286 10.8317 34 1 7.6186 4.0036 11.3076 35 1 5.9124 2.2076 12.7450 36 1 4.5960 2.4757 10.7166 37 1 9.1772 2.3103 8.3905 38 1 8.8648 1.5498 6.0445 39 1 3.3813 -1.5046 3.8768 40 1 4.5178 -2.5469 2.9171 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:02:20 Heat of formation + Delta-G solvation = -63.540958 kcal Electronic energy + Delta-G solvation = -24847.457859 eV Core-core repulsion = 20950.645896 eV Total energy + Delta-G solvation = -3896.811962 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.87188 -40.85730 -39.35356 -38.04095 -37.94827 -36.98346 -35.00412 -33.81527 -33.00467 -31.24741 -30.38119 -27.93499 -26.85191 -25.07113 -24.68045 -23.14449 -21.67916 -21.01308 -19.88455 -19.10933 -18.78412 -18.25574 -17.83910 -17.38615 -17.10955 -16.92247 -16.64002 -16.33414 -16.18095 -16.00443 -15.58309 -15.26061 -14.94221 -14.50070 -14.38404 -14.31053 -14.24607 -14.08675 -14.03667 -13.72671 -13.57781 -13.28061 -13.03910 -12.95057 -12.70020 -12.59846 -12.20566 -12.13803 -12.04720 -11.57220 -11.32156 -11.21502 -11.06938 -10.79291 -10.57685 -10.30017 -10.00687 -5.14757 -1.06701 -0.55282 0.08156 1.04757 1.42047 1.63209 1.70481 1.78204 2.01687 2.59652 2.65767 2.90934 2.94199 3.14279 3.24514 3.28428 3.48703 3.52825 3.61856 3.69386 3.73775 3.74525 3.79300 3.87849 3.94328 4.08530 4.18331 4.21194 4.29972 4.54337 4.57213 4.59087 4.60803 4.63527 4.83952 4.86726 4.97340 4.99064 5.13539 5.36347 5.49378 6.21904 6.34442 6.64231 7.15521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.153 4.153 9 C 0.119 3.881 10 H 0.122 0.878 11 N -0.700 5.700 12 C 0.574 3.426 13 O -0.527 6.527 14 C 0.079 3.921 15 N -0.453 5.453 16 C 0.105 3.895 17 C -0.102 4.102 18 C -0.076 4.076 19 O -0.534 6.534 20 Si 0.684 3.316 21 C -0.052 4.052 22 C -0.107 4.107 23 C -0.129 4.129 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.128 0.872 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.412 0.588 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.384 0.616 35 H -0.256 1.256 36 H -0.250 1.250 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -3.615 7.011 8.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.931 6.931 4 O -0.936 6.936 5 C -0.728 4.728 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.191 4.191 9 C 0.014 3.986 10 H 0.140 0.860 11 N -0.351 5.351 12 C 0.359 3.641 13 O -0.402 6.402 14 C -0.059 4.059 15 N -0.164 5.164 16 C -0.054 4.054 17 C -0.105 4.105 18 C -0.186 4.186 19 O -0.342 6.342 20 Si 0.584 3.416 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.169 4.169 24 H 0.147 0.853 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.155 0.845 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.249 0.751 32 H 0.181 0.819 33 H 0.102 0.898 34 H 0.233 0.767 35 H -0.180 1.180 36 H -0.174 1.174 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.112 0.888 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.942 -3.380 5.259 7.391 hybrid contribution 0.281 1.116 1.719 2.069 sum -3.661 -2.264 6.978 8.199 Atomic orbital electron populations 1.30302 1.26933 1.11579 1.11981 1.07936 0.78276 0.75985 0.77747 1.93622 1.78809 1.34247 1.86384 1.93622 1.79017 1.67089 1.53823 1.30294 1.04812 1.14182 1.23559 1.22068 0.90789 0.99397 0.99978 0.87059 1.23748 0.99267 0.96337 0.99764 1.22620 0.98916 0.95018 0.81997 0.85987 1.45772 1.14439 1.62430 1.12452 1.17887 0.82820 0.77452 0.85917 1.90820 1.42136 1.55071 1.52192 1.21163 0.91147 0.99589 0.93973 1.67524 1.31312 1.14893 1.02667 1.22588 0.95773 0.95049 0.92031 1.20522 0.95124 0.99080 0.95732 1.24734 1.11362 0.84792 0.97719 1.86585 1.94531 1.19538 1.33566 0.95078 0.76527 0.91684 0.78336 1.21541 0.99356 0.94839 0.92087 1.22213 0.98058 0.95618 0.96910 1.23369 0.97847 0.98902 0.96747 0.85339 0.85137 0.85332 0.84490 0.84748 0.89561 0.88753 0.75085 0.81894 0.89824 0.76704 1.18022 1.17425 0.83579 0.82900 0.88800 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.85 10.62 101.05 1.07 3.92 16 2 S 2.42 -3.62 5.35 -107.50 -0.58 -4.19 16 3 O -0.93 -2.47 18.10 -57.83 -1.05 -3.52 16 4 O -0.94 -2.57 18.10 -57.83 -1.05 -3.62 16 5 C -0.60 2.51 5.64 37.15 0.21 2.72 16 6 C -0.10 0.20 3.66 -89.81 -0.33 -0.13 16 7 H 0.11 -0.19 8.13 -51.93 -0.42 -0.62 16 8 C -0.15 0.06 7.44 -25.78 -0.19 -0.13 16 9 C 0.12 -0.03 4.25 -66.98 -0.28 -0.31 16 10 H 0.12 0.12 7.47 -51.93 -0.39 -0.27 16 11 N -0.70 -0.30 5.35 -53.72 -0.29 -0.58 16 12 C 0.57 1.77 7.81 -12.18 -0.10 1.67 16 13 O -0.53 -3.17 15.92 5.35 0.09 -3.08 16 14 C 0.08 0.17 6.75 -83.01 -0.56 -0.39 16 15 N -0.45 -0.57 9.54 -9.80 -0.09 -0.66 16 16 C 0.10 -0.01 9.84 -17.57 -0.17 -0.18 16 17 C -0.10 0.02 5.40 -104.36 -0.56 -0.54 16 18 C -0.08 0.15 2.81 36.01 0.10 0.25 16 19 O -0.53 0.27 12.82 -35.23 -0.45 -0.18 16 20 Si 0.68 -1.90 29.87 -169.99 -5.08 -6.97 16 21 C -0.05 -0.01 9.83 -39.31 -0.39 -0.39 16 22 C -0.11 -0.14 9.63 -39.06 -0.38 -0.52 16 23 C -0.13 0.35 7.39 -25.92 -0.19 0.16 16 24 H 0.13 -0.77 8.14 -51.92 -0.42 -1.19 16 25 H 0.13 -0.52 8.14 -51.93 -0.42 -0.94 16 26 H 0.13 -0.78 8.14 -51.93 -0.42 -1.20 16 27 H 0.14 -0.89 8.14 -51.93 -0.42 -1.31 16 28 H 0.13 -0.84 7.84 -51.92 -0.41 -1.24 16 29 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.09 -0.11 7.90 -51.93 -0.41 -0.52 16 31 H 0.41 -0.52 8.06 -40.82 -0.33 -0.84 16 32 H 0.16 -0.38 4.88 -52.48 -0.26 -0.64 16 33 H 0.08 -0.32 7.96 -51.93 -0.41 -0.73 16 34 H 0.38 -1.71 8.74 45.56 0.40 -1.31 16 35 H -0.26 0.16 7.11 56.52 0.40 0.57 16 36 H -0.25 -0.05 7.05 56.52 0.40 0.35 16 37 H 0.15 -0.23 8.06 -52.48 -0.42 -0.65 16 38 H 0.15 0.13 7.64 -52.48 -0.40 -0.27 16 39 H 0.09 -0.38 8.08 -51.93 -0.42 -0.80 16 40 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 353.89 15.07 5.33 5.33 Total: 0.00 -13.86 353.89 -10.13 -24.00 By element: Atomic # 1 Polarization: -7.43 SS G_CDS: -5.21 Total: -12.64 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.77 Total: 6.12 kcal Atomic # 7 Polarization: -0.87 SS G_CDS: -0.38 Total: -1.25 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -2.46 Total: -10.40 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.08 Total: -6.97 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -0.58 Total: -4.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -13.86 -10.13 -24.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.543 kcal (2) G-P(sol) polarization free energy of solvation -13.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds