Wall clock time and date at job start Sun Mar 7 2021 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 108.57795 * 2 1 4 4 O 1.42105 * 108.57491 * 228.97518 * 2 1 3 5 5 C 1.81402 * 101.92055 * 114.49166 * 2 1 3 6 6 C 1.53000 * 109.46847 * 180.02562 * 5 2 1 7 7 H 1.08996 * 112.85265 * 316.19441 * 6 5 2 8 8 C 1.53783 * 113.69185 * 87.46448 * 6 5 2 9 9 C 1.53778 * 87.08364 * 139.99003 * 8 6 5 10 10 H 1.09006 * 113.68778 * 89.12698 * 9 8 6 11 11 N 1.46500 * 113.61517 * 220.01571 * 9 8 6 12 12 C 1.34771 * 120.00435 * 252.49892 * 11 9 8 13 13 O 1.21283 * 119.99788 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00260 * 180.02562 * 12 11 9 15 15 C 1.50703 * 109.47129 * 180.02562 * 14 12 11 16 16 C 1.38272 * 119.93513 * 89.99936 * 15 14 12 17 17 C 1.38124 * 120.06543 * 180.02562 * 16 15 14 18 18 C 1.38827 * 119.93573 * 359.97438 * 17 16 15 19 19 N 1.40199 * 120.06594 * 179.97438 * 18 17 16 20 20 C 1.36568 * 125.66889 * 310.02632 * 19 18 17 21 21 C 1.34849 * 108.19442 * 179.97438 * 20 19 18 22 22 C 1.40937 * 107.47475 * 359.78711 * 21 20 19 23 23 C 1.34854 * 107.46474 * 0.35393 * 22 21 20 24 24 C 1.50696 * 125.90002 * 179.90660 * 23 22 21 25 25 O 1.42903 * 109.47131 * 149.68726 * 24 23 22 26 26 Si 1.86305 * 109.47185 * 29.69267 * 24 23 22 27 27 C 1.38830 * 119.86594 * 0.25926 * 18 17 16 28 28 C 1.38128 * 119.93127 * 359.46556 * 27 18 17 29 29 C 1.53777 * 87.07938 * 334.56712 * 9 8 6 30 30 H 1.08996 * 109.47313 * 305.51100 * 1 2 3 31 31 H 1.08997 * 109.47321 * 65.51371 * 1 2 3 32 32 H 1.09003 * 109.47055 * 185.51219 * 1 2 3 33 33 H 1.08997 * 109.47614 * 59.99961 * 5 2 1 34 34 H 1.08999 * 109.46779 * 299.99768 * 5 2 1 35 35 H 1.09001 * 113.61385 * 25.43534 * 8 6 5 36 36 H 1.09006 * 113.61267 * 254.54077 * 8 6 5 37 37 H 0.97006 * 119.99498 * 72.49693 * 11 9 8 38 38 H 1.08996 * 109.47356 * 59.99965 * 14 12 11 39 39 H 1.09005 * 109.46856 * 299.99956 * 14 12 11 40 40 H 1.08005 * 119.96829 * 0.02562 * 16 15 14 41 41 H 1.08001 * 120.02962 * 179.97438 * 17 16 15 42 42 H 1.07997 * 125.89821 * 359.95853 * 20 19 18 43 43 H 1.08007 * 126.26310 * 180.02562 * 21 20 19 44 44 H 1.07992 * 126.26994 * 180.22420 * 22 21 20 45 45 H 1.08999 * 109.47358 * 269.69086 * 24 23 22 46 46 H 0.96700 * 114.00311 * 300.00591 * 25 24 23 47 47 H 1.48497 * 110.00233 * 179.97438 * 26 24 23 48 48 H 1.48492 * 109.99800 * 301.31995 * 26 24 23 49 49 H 1.07993 * 120.03272 * 179.74467 * 27 18 17 50 50 H 1.07999 * 119.96167 * 180.27941 * 28 27 18 51 51 H 1.08998 * 113.61306 * 139.98158 * 29 9 8 52 52 H 1.09000 * 113.61495 * 270.88594 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7358 1.6152 6 6 3.7054 -0.8185 1.7984 7 1 4.2206 -1.1761 0.9069 8 6 4.3256 0.4539 2.3995 9 6 5.2297 -0.4732 3.2288 10 1 6.1621 -0.7370 2.7295 11 7 5.4314 -0.0175 4.6065 12 6 6.6207 0.4950 4.9796 13 8 7.5240 0.5793 4.1746 14 6 6.8283 0.9632 6.3969 15 6 8.2321 1.4888 6.5518 16 6 8.4986 2.8250 6.3159 17 6 9.7844 3.3095 6.4566 18 6 10.8096 2.4536 6.8357 19 7 12.1159 2.9424 6.9787 20 6 12.7890 3.6966 6.0604 21 6 14.0123 3.9716 6.5567 22 6 14.0978 3.3707 7.8287 23 6 12.9264 2.7439 8.0598 24 6 12.5708 1.9645 9.2996 25 8 11.1632 2.0521 9.5300 26 14 13.4843 2.6717 10.7611 27 6 10.5399 1.1116 7.0671 28 6 9.2510 0.6341 6.9303 29 6 4.1318 -1.5405 3.0875 30 1 -0.3634 0.5969 0.8365 31 1 -0.3634 0.4259 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 1.7610 -1.7371 1.6664 34 1 1.7610 -0.1172 2.4042 35 1 3.6285 1.0369 3.0014 36 1 4.8691 1.0594 1.6741 37 1 4.7088 -0.0846 5.2502 38 1 6.6747 0.1289 7.0813 39 1 6.1164 1.7564 6.6254 40 1 7.7005 3.4904 6.0214 41 1 9.9919 4.3531 6.2718 42 1 12.4075 4.0170 5.1022 43 1 14.7838 4.5500 6.0702 44 1 14.9468 3.4042 8.4953 45 1 12.8527 0.9201 9.1656 46 1 10.8410 2.9548 9.6582 47 1 13.1418 1.9122 11.9903 48 1 14.9485 2.6157 10.5204 49 1 11.3362 0.4426 7.3581 50 1 9.0398 -0.4089 7.1146 51 1 4.5189 -2.5452 2.9176 52 1 3.3818 -1.5028 3.8775 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13287746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:02:32 Heat of formation + Delta-G solvation = -25.571939 kcal Electronic energy + Delta-G solvation = -34985.193506 eV Core-core repulsion = 30238.736725 eV Total energy + Delta-G solvation = -4746.456781 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.149 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.73046 -41.32527 -40.17046 -39.17318 -37.97645 -37.70708 -37.00320 -34.88923 -34.78096 -32.14090 -31.95834 -31.06747 -30.90190 -30.08651 -27.83006 -26.73826 -26.08106 -24.36715 -23.97129 -22.96267 -21.56734 -21.41132 -20.75155 -20.57799 -19.80097 -19.27750 -18.04640 -17.94325 -17.53131 -17.34979 -17.03860 -16.96915 -16.80505 -16.29877 -16.24385 -16.03313 -15.81676 -15.74719 -15.38840 -15.04825 -14.77021 -14.60867 -14.46764 -14.39262 -14.18966 -14.05391 -13.97978 -13.90886 -13.60516 -13.44571 -13.34088 -13.26422 -13.21827 -13.07963 -13.00863 -12.96411 -12.64020 -12.51103 -12.23761 -12.02988 -12.01796 -12.00115 -11.94469 -11.48302 -11.10900 -10.94067 -10.73574 -10.30677 -10.03314 -9.94554 -9.15979 -9.07506 -4.95872 -0.90843 0.00353 0.38107 1.06577 1.36444 1.63274 1.63610 1.86446 1.91451 1.94556 2.08467 2.19471 2.73153 2.79852 3.11228 3.36129 3.38194 3.45102 3.63207 3.64940 3.66074 3.74649 3.78707 3.90255 3.98375 4.09166 4.10366 4.11881 4.19211 4.23038 4.34213 4.34763 4.40616 4.48794 4.51878 4.54360 4.62313 4.65825 4.73218 4.75972 4.82344 4.86087 4.96702 4.98343 4.98573 5.03893 5.16956 5.21122 5.22532 5.25184 5.36262 5.52762 5.57987 5.81194 5.90510 6.16062 6.48082 6.59036 6.59663 7.30193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.402 3.598 3 O -0.988 6.988 4 O -0.997 6.997 5 C -0.577 4.577 6 C -0.114 4.114 7 H 0.091 0.909 8 C -0.157 4.157 9 C 0.112 3.888 10 H 0.087 0.913 11 N -0.706 5.706 12 C 0.511 3.489 13 O -0.584 6.584 14 C -0.097 4.097 15 C -0.067 4.067 16 C -0.097 4.097 17 C -0.123 4.123 18 C 0.113 3.887 19 N -0.393 5.393 20 C -0.019 4.019 21 C -0.199 4.199 22 C -0.205 4.205 23 C -0.018 4.018 24 C -0.051 4.051 25 O -0.545 6.545 26 Si 0.802 3.198 27 C -0.096 4.096 28 C -0.099 4.099 29 C -0.111 4.111 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.421 0.579 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.146 0.854 41 H 0.136 0.864 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.104 0.896 46 H 0.388 0.612 47 H -0.288 1.288 48 H -0.282 1.282 49 H 0.111 0.889 50 H 0.135 0.865 51 H 0.083 0.917 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.039 -0.499 7.173 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.591 3.409 3 O -0.985 6.985 4 O -0.994 6.994 5 C -0.709 4.709 6 C -0.134 4.134 7 H 0.110 0.890 8 C -0.195 4.195 9 C 0.007 3.993 10 H 0.105 0.895 11 N -0.358 5.358 12 C 0.299 3.701 13 O -0.463 6.463 14 C -0.136 4.136 15 C -0.067 4.067 16 C -0.115 4.115 17 C -0.142 4.142 18 C 0.023 3.977 19 N -0.066 5.066 20 C -0.147 4.147 21 C -0.223 4.223 22 C -0.230 4.230 23 C -0.128 4.128 24 C -0.160 4.160 25 O -0.351 6.351 26 Si 0.706 3.294 27 C -0.116 4.116 28 C -0.118 4.118 29 C -0.150 4.150 30 H 0.174 0.826 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.188 0.812 34 H 0.188 0.812 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.259 0.741 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.154 0.846 42 H 0.192 0.808 43 H 0.171 0.829 44 H 0.167 0.833 45 H 0.122 0.878 46 H 0.236 0.764 47 H -0.215 1.215 48 H -0.209 1.209 49 H 0.129 0.871 50 H 0.153 0.847 51 H 0.102 0.898 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.512 -1.035 6.440 11.533 hybrid contribution -0.166 -0.677 -0.438 0.823 sum -9.678 -1.712 6.002 11.516 Atomic orbital electron populations 1.30128 1.22369 1.13859 1.13083 1.07929 0.79851 0.74511 0.78576 1.93555 1.80780 1.36700 1.87504 1.93551 1.81036 1.67736 1.57078 1.30121 1.03236 1.16365 1.21162 1.22099 0.92383 0.98860 1.00035 0.89026 1.23746 0.99556 0.96659 0.99570 1.22405 0.98080 0.96118 0.82743 0.89509 1.45838 1.14554 1.63078 1.12329 1.21126 0.81967 0.76408 0.90639 1.90755 1.43698 1.56421 1.55464 1.20770 0.94711 1.05010 0.93098 1.19576 0.95280 0.93595 0.98296 1.21088 0.96401 0.95494 0.98541 1.21119 0.91999 0.99694 1.01363 1.17770 0.82729 0.93056 1.04125 1.41551 1.10238 1.40483 1.14341 1.22302 0.94063 1.01637 0.96655 1.21176 0.97598 1.06596 0.96895 1.20958 0.97760 1.04706 0.99546 1.21243 0.92750 1.06913 0.91907 1.25017 0.88709 1.02139 1.00150 1.86487 1.20321 1.34128 1.94135 0.93024 0.76095 0.87859 0.72468 1.20840 0.97629 0.93276 0.99828 1.21000 0.91594 1.00209 0.98976 1.23338 0.97188 0.97937 0.96563 0.82629 0.85538 0.82813 0.81166 0.81200 0.86870 0.92857 0.74069 0.84981 0.84556 0.83632 0.84607 0.80831 0.82865 0.83347 0.87823 0.76356 1.21545 1.20881 0.87123 0.84677 0.89792 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.40 10.62 113.37 1.20 8.61 16 2 S 2.40 -7.85 5.35 -56.49 -0.30 -8.15 16 3 O -0.99 -6.13 18.10 -127.37 -2.30 -8.44 16 4 O -1.00 -7.06 18.10 -127.37 -2.31 -9.37 16 5 C -0.58 6.84 5.65 71.98 0.41 7.25 16 6 C -0.11 0.60 3.65 -10.27 -0.04 0.57 16 7 H 0.09 -0.16 8.13 -2.39 -0.02 -0.18 16 8 C -0.16 0.35 7.43 31.12 0.23 0.58 16 9 C 0.11 -0.27 4.24 45.52 0.19 -0.08 16 10 H 0.09 0.37 7.47 -2.38 -0.02 0.36 16 11 N -0.71 4.04 5.35 -440.05 -2.36 1.68 16 12 C 0.51 0.26 7.82 87.66 0.69 0.94 16 13 O -0.58 -7.06 15.63 -3.04 -0.05 -7.10 16 14 C -0.10 0.60 5.83 29.10 0.17 0.77 16 15 C -0.07 -0.05 4.37 -19.85 -0.09 -0.14 16 16 C -0.10 -0.11 9.69 22.25 0.22 0.11 16 17 C -0.12 -0.39 9.66 22.38 0.22 -0.17 16 18 C 0.11 0.68 4.89 38.08 0.19 0.86 16 19 N -0.39 -2.62 2.87 -333.41 -0.96 -3.58 16 20 C -0.02 -0.12 11.12 83.18 0.93 0.81 16 21 C -0.20 -1.13 10.86 22.15 0.24 -0.89 16 22 C -0.21 -1.17 9.42 22.15 0.21 -0.96 16 23 C -0.02 -0.10 6.02 41.04 0.25 0.15 16 24 C -0.05 -0.12 2.28 71.23 0.16 0.04 16 25 O -0.54 -0.97 9.86 -148.98 -1.47 -2.44 16 26 Si 0.80 -0.41 31.30 68.60 2.15 1.74 16 27 C -0.10 -0.62 7.67 22.39 0.17 -0.45 16 28 C -0.10 -0.34 9.69 22.25 0.22 -0.13 16 29 C -0.11 0.99 7.39 31.12 0.23 1.22 16 30 H 0.16 -2.58 8.14 -2.39 -0.02 -2.60 16 31 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 32 H 0.15 -2.48 8.14 -2.39 -0.02 -2.50 16 33 H 0.17 -3.06 8.14 -2.39 -0.02 -3.08 16 34 H 0.17 -3.16 7.85 -2.39 -0.02 -3.18 16 35 H 0.11 -0.76 7.90 -2.39 -0.02 -0.77 16 36 H 0.05 0.21 8.14 -2.38 -0.02 0.20 16 37 H 0.42 -5.81 8.73 -92.70 -0.81 -6.62 16 38 H 0.13 -1.49 8.08 -2.39 -0.02 -1.51 16 39 H 0.14 -1.65 8.08 -2.38 -0.02 -1.67 16 40 H 0.15 -0.47 8.06 -2.91 -0.02 -0.49 16 41 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.15 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.15 0.51 6.66 -2.91 -0.02 0.49 16 45 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 46 H 0.39 -1.45 8.70 -74.06 -0.64 -2.09 16 47 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 48 H -0.28 -1.16 6.78 99.48 0.67 -0.49 16 49 H 0.11 0.86 7.67 -2.91 -0.02 0.84 16 50 H 0.14 0.05 8.06 -2.91 -0.02 0.03 16 51 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 52 H 0.12 -1.88 8.08 -2.39 -0.02 -1.90 16 Total: 0.00 -40.93 443.23 -2.31 -43.24 By element: Atomic # 1 Polarization: -26.17 SS G_CDS: -0.50 Total: -26.67 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.79 Total: 19.08 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -3.31 Total: -1.90 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -6.13 Total: -27.34 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.15 Total: 1.74 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -0.30 Total: -8.15 kcal Total: -40.93 -2.31 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13287746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.665 kcal (2) G-P(sol) polarization free energy of solvation -40.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds