Wall clock time and date at job start Sun Mar 7 2021 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 C 1.53001 * 109.47348 * 179.97438 * 5 2 1 7 7 H 1.08997 * 112.84706 * 314.67112 * 6 5 2 8 8 C 1.53781 * 113.61389 * 85.86415 * 6 5 2 9 9 C 1.53957 * 87.01983 * 139.95253 * 8 6 5 10 10 H 1.09000 * 113.53380 * 89.18617 * 9 8 6 11 11 N 1.46496 * 113.74065 * 220.05394 * 9 8 6 12 12 C 1.34779 * 119.99997 * 252.59512 * 11 9 8 13 13 O 1.21592 * 119.99901 * 0.02562 * 12 11 9 14 14 C 1.47556 * 120.00211 * 180.02562 * 12 11 9 15 15 C 1.39840 * 119.99911 * 359.72616 * 14 12 11 16 16 C 1.36560 * 119.99494 * 179.78527 * 15 14 12 17 17 C 1.39814 * 120.00551 * 0.46889 * 16 15 14 18 18 C 1.47562 * 120.00183 * 179.76253 * 17 16 15 19 19 C 1.34977 * 125.27404 * 359.73678 * 18 17 16 20 20 C 1.37804 * 114.70033 * 179.85718 * 19 18 17 21 21 C 1.33739 * 115.08067 * 0.43829 * 20 19 18 22 22 C 1.50697 * 125.12032 * 179.76571 * 21 20 19 23 23 O 1.42898 * 109.47155 * 300.02676 * 22 21 20 24 24 Si 1.86304 * 109.47162 * 180.02562 * 22 21 20 25 25 S 1.75862 * 109.76269 * 359.76280 * 21 20 19 26 26 C 1.39828 * 119.99970 * 359.78462 * 17 16 15 27 27 C 1.36553 * 120.00158 * 359.97438 * 26 17 16 28 28 C 1.53778 * 87.11184 * 334.63815 * 9 8 6 29 29 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 30 30 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 31 31 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 32 32 H 1.09003 * 109.47583 * 300.00163 * 5 2 1 33 33 H 1.09003 * 109.47643 * 59.99714 * 5 2 1 34 34 H 1.09004 * 113.61452 * 254.53383 * 8 6 5 35 35 H 1.09004 * 113.61550 * 25.42919 * 8 6 5 36 36 H 0.97001 * 119.99992 * 72.60211 * 11 9 8 37 37 H 1.08002 * 119.99932 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.99598 * 180.22856 * 16 15 14 39 39 H 1.08000 * 122.65032 * 0.02562 * 19 18 17 40 40 H 1.08000 * 122.45747 * 180.18040 * 20 19 18 41 41 H 1.09011 * 109.47140 * 60.02477 * 22 21 20 42 42 H 0.96704 * 113.99815 * 180.02562 * 23 22 21 43 43 H 1.48497 * 110.00118 * 298.68138 * 24 22 21 44 44 H 1.48501 * 109.99755 * 60.00140 * 24 22 21 45 45 H 1.08000 * 119.99734 * 179.97438 * 26 17 16 46 46 H 1.07999 * 119.99882 * 179.97438 * 27 26 17 47 47 H 1.09004 * 113.61300 * 270.81669 * 28 9 8 48 48 H 1.08996 * 113.69037 * 139.92110 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7978 7 1 4.2175 -1.2028 0.9152 8 6 4.3301 0.4674 2.3621 9 6 5.2324 -0.4411 3.2171 10 1 6.1629 -0.7199 2.7226 11 7 5.4381 0.0486 4.5823 12 6 6.6297 0.5671 4.9399 13 8 7.5338 0.6289 4.1291 14 6 6.8372 1.0599 6.3152 15 6 5.7957 0.9941 7.2460 16 6 5.9892 1.4461 8.5200 17 6 7.2254 1.9837 8.8910 18 6 7.4327 2.4769 10.2662 19 6 6.5050 2.4655 11.2466 20 6 6.9343 2.9778 12.4516 21 6 8.1980 3.4154 12.4637 22 6 8.8945 4.0209 13.6550 23 8 8.1913 5.1924 14.0733 24 14 10.6394 4.4774 13.1884 25 16 8.9247 3.1778 10.8799 26 6 8.2652 2.0543 7.9588 27 6 8.0734 1.5978 6.6862 28 6 4.1314 -1.5088 3.1049 29 1 -0.3634 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 -0.3634 0.5969 0.8366 32 1 1.7610 -0.1172 2.4042 33 1 1.7610 -1.7370 1.6664 34 1 4.8745 1.0506 1.6194 35 1 3.6356 1.0692 2.9482 36 1 4.7168 -0.0004 5.2290 37 1 4.8396 0.5823 6.9584 38 1 5.1860 1.3920 9.2400 39 1 5.5060 2.0825 11.0990 40 1 6.2957 3.0264 13.3213 41 1 8.9137 3.2980 14.4708 42 1 8.5847 5.6355 14.8375 43 1 11.3908 3.2627 12.7820 44 1 10.6268 5.4624 12.0772 45 1 9.2199 2.4699 8.2453 46 1 8.8764 1.6528 5.9661 47 1 3.3824 -1.4482 3.8945 48 1 4.5142 -2.5192 2.9612 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:02:51 Heat of formation + Delta-G solvation = -42.234566 kcal Electronic energy + Delta-G solvation = -31782.633030 eV Core-core repulsion = 27217.343340 eV Total energy + Delta-G solvation = -4565.289691 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.094 amu Computer time = 4.70 seconds Orbital eigenvalues (eV) -41.57451 -40.49887 -39.46063 -38.81025 -37.98697 -37.45814 -37.02064 -35.06195 -33.55858 -32.36239 -31.34060 -30.66685 -30.22202 -27.34329 -26.91940 -25.13753 -24.19037 -23.76067 -23.09445 -21.63712 -20.99227 -20.16131 -19.92832 -19.04018 -18.62440 -18.31170 -17.97592 -17.55573 -17.15969 -17.05632 -16.83131 -16.33518 -16.22277 -16.01504 -15.97547 -15.61315 -15.46652 -15.02581 -14.88659 -14.64783 -14.53052 -14.39505 -14.31805 -14.28254 -14.12705 -13.78000 -13.64823 -13.50000 -13.31001 -13.21661 -13.10739 -13.07358 -12.98819 -12.71447 -12.66452 -12.34172 -12.23174 -12.12122 -12.08448 -11.79438 -11.62216 -11.29673 -10.93140 -10.81544 -10.42535 -10.25117 -10.11530 -9.59196 -9.05883 -5.31640 -1.11038 -0.92002 0.21570 0.28577 0.39394 0.73184 1.11486 1.47087 1.58044 1.66232 1.84448 1.97957 2.03379 2.56115 2.80216 2.88047 3.18116 3.23313 3.25636 3.37311 3.44086 3.55753 3.59683 3.67503 3.70827 3.73021 3.74475 3.76366 3.89958 4.03686 4.11352 4.23291 4.24904 4.25133 4.37351 4.46761 4.49757 4.54010 4.55932 4.56832 4.59902 4.78375 4.83547 4.93714 4.94809 5.03679 5.07611 5.17754 5.22954 5.25382 5.41824 5.43261 5.67505 6.40247 6.46624 7.15489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.112 0.888 8 C -0.153 4.153 9 C 0.122 3.878 10 H 0.122 0.878 11 N -0.717 5.717 12 C 0.561 3.439 13 O -0.531 6.531 14 C -0.137 4.137 15 C -0.078 4.078 16 C -0.109 4.109 17 C 0.014 3.986 18 C -0.145 4.145 19 C -0.118 4.118 20 C -0.099 4.099 21 C -0.174 4.174 22 C -0.034 4.034 23 O -0.543 6.543 24 Si 0.667 3.333 25 S 0.113 5.887 26 C -0.120 4.120 27 C -0.048 4.048 28 C -0.131 4.131 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.385 0.615 43 H -0.238 1.238 44 H -0.235 1.235 45 H 0.129 0.871 46 H 0.142 0.858 47 H 0.092 0.908 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -1.793 8.323 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.599 3.401 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.123 4.123 7 H 0.130 0.870 8 C -0.192 4.192 9 C 0.017 3.983 10 H 0.140 0.860 11 N -0.368 5.368 12 C 0.349 3.651 13 O -0.408 6.408 14 C -0.140 4.140 15 C -0.097 4.097 16 C -0.129 4.129 17 C 0.012 3.988 18 C -0.262 4.262 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.291 4.291 22 C -0.147 4.147 23 O -0.349 6.349 24 Si 0.566 3.434 25 S 0.380 5.620 26 C -0.139 4.139 27 C -0.067 4.067 28 C -0.170 4.170 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.236 0.764 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.103 0.897 42 H 0.233 0.767 43 H -0.162 1.162 44 H -0.158 1.158 45 H 0.147 0.853 46 H 0.160 0.840 47 H 0.110 0.890 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.642 -1.288 5.325 5.719 hybrid contribution -3.014 -0.867 1.629 3.534 sum -4.655 -2.156 6.954 8.641 Atomic orbital electron populations 1.30303 1.26867 1.11602 1.12026 1.07972 0.78325 0.76024 0.77754 1.93627 1.78813 1.34187 1.86365 1.93623 1.79007 1.67082 1.53766 1.30300 1.04806 1.14179 1.23607 1.22079 0.90773 0.99408 0.99993 0.87033 1.23739 0.99246 0.96259 0.99949 1.22554 0.98852 0.94573 0.82309 0.86025 1.45857 1.14350 1.63233 1.13345 1.18244 0.82348 0.77217 0.87334 1.90815 1.42054 1.55412 1.52498 1.20014 0.95714 1.04495 0.93799 1.20945 0.98035 0.97753 0.92921 1.20859 0.96426 0.99098 0.96547 1.18299 0.94217 0.96406 0.89901 1.23097 0.97666 1.08467 0.96981 1.20380 1.00455 1.02125 0.91905 1.19990 0.94756 0.99134 0.99062 1.23739 0.98963 1.08778 0.97602 1.23970 1.05315 0.90039 0.95401 1.86508 1.55423 1.40044 1.52969 0.94895 0.77096 0.84159 0.87205 1.84247 1.14594 1.59487 1.03693 1.20972 0.98696 1.01073 0.93189 1.20946 0.96395 0.93471 0.95858 1.23371 0.97809 0.99141 0.96657 0.85084 0.85316 0.85323 0.84796 0.84493 0.89510 0.88803 0.76358 0.85206 0.84755 0.83494 0.83449 0.89718 0.76678 1.16211 1.15843 0.85332 0.84018 0.88976 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.96 10.62 101.05 1.07 4.03 16 2 S 2.42 -3.86 5.36 -107.50 -0.58 -4.44 16 3 O -0.93 -2.32 18.10 -57.83 -1.05 -3.37 16 4 O -0.94 -2.52 18.10 -57.83 -1.05 -3.56 16 5 C -0.60 2.68 5.63 37.16 0.21 2.89 16 6 C -0.10 0.22 3.64 -89.80 -0.33 -0.10 16 7 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 8 C -0.15 0.11 7.45 -25.83 -0.19 -0.08 16 9 C 0.12 -0.08 4.24 -67.03 -0.28 -0.36 16 10 H 0.12 0.13 7.46 -51.93 -0.39 -0.26 16 11 N -0.72 0.48 5.31 -53.96 -0.29 0.19 16 12 C 0.56 1.47 7.76 -12.46 -0.10 1.37 16 13 O -0.53 -3.44 15.93 5.28 0.08 -3.36 16 14 C -0.14 -0.20 5.88 -104.90 -0.62 -0.81 16 15 C -0.08 0.07 9.48 -39.59 -0.38 -0.30 16 16 C -0.11 0.05 9.48 -39.60 -0.38 -0.33 16 17 C 0.01 0.02 5.88 -104.91 -0.62 -0.60 16 18 C -0.15 -0.27 6.37 -36.94 -0.24 -0.51 16 19 C -0.12 -0.10 9.64 -40.90 -0.39 -0.49 16 20 C -0.10 -0.13 10.00 -41.32 -0.41 -0.54 16 21 C -0.17 -0.33 5.76 -35.89 -0.21 -0.54 16 22 C -0.03 0.02 2.95 36.00 0.11 0.12 16 23 O -0.54 0.20 12.83 -35.23 -0.45 -0.26 16 24 Si 0.67 -0.74 30.96 -169.99 -5.26 -6.00 16 25 S 0.11 0.28 19.46 -107.50 -2.09 -1.82 16 26 C -0.12 -0.21 9.54 -39.60 -0.38 -0.58 16 27 C -0.05 -0.10 9.53 -39.59 -0.38 -0.48 16 28 C -0.13 0.41 7.40 -25.92 -0.19 0.21 16 29 H 0.13 -0.54 8.14 -51.92 -0.42 -0.96 16 30 H 0.13 -0.80 8.14 -51.93 -0.42 -1.22 16 31 H 0.13 -0.80 8.14 -51.92 -0.42 -1.23 16 32 H 0.13 -0.90 7.88 -51.92 -0.41 -1.31 16 33 H 0.14 -0.92 8.14 -51.92 -0.42 -1.34 16 34 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 35 H 0.09 -0.17 7.92 -51.93 -0.41 -0.58 16 36 H 0.40 -1.47 6.74 -40.82 -0.28 -1.74 16 37 H 0.13 -0.55 6.38 -52.49 -0.34 -0.88 16 38 H 0.13 -0.36 6.74 -52.49 -0.35 -0.71 16 39 H 0.15 -0.24 6.88 -52.49 -0.36 -0.60 16 40 H 0.15 -0.02 8.06 -52.49 -0.42 -0.45 16 41 H 0.09 -0.20 7.96 -51.92 -0.41 -0.62 16 42 H 0.39 -2.12 8.74 45.56 0.40 -1.73 16 43 H -0.24 -0.27 7.11 56.52 0.40 0.13 16 44 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 45 H 0.13 0.12 7.26 -52.49 -0.38 -0.26 16 46 H 0.14 0.31 7.64 -52.49 -0.40 -0.09 16 47 H 0.09 -0.44 8.08 -51.93 -0.42 -0.86 16 48 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 LS Contribution 426.23 15.07 6.42 6.42 Total: 0.00 -15.50 426.23 -14.27 -29.77 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: -6.33 Total: -16.48 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -3.69 Total: 2.89 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -0.29 Total: 0.19 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -2.46 Total: -10.55 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.26 Total: -6.00 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.67 Total: -6.25 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -15.50 -14.27 -29.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.464 kcal (2) G-P(sol) polarization free energy of solvation -15.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.71 seconds