Wall clock time and date at job start Sun Mar 7 2021 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57879 * 2 1 4 4 O 1.42097 * 108.57629 * 228.97761 * 2 1 3 5 5 C 1.81391 * 101.92304 * 114.48919 * 2 1 3 6 6 C 1.53001 * 109.47348 * 179.97438 * 5 2 1 7 7 H 1.08997 * 112.84706 * 314.67112 * 6 5 2 8 8 C 1.53781 * 113.61389 * 85.86415 * 6 5 2 9 9 C 1.53957 * 87.01983 * 139.95253 * 8 6 5 10 10 H 1.09000 * 113.53380 * 89.18617 * 9 8 6 11 11 N 1.46496 * 113.74065 * 220.05394 * 9 8 6 12 12 C 1.34779 * 119.99997 * 252.59512 * 11 9 8 13 13 O 1.21592 * 119.99901 * 0.02562 * 12 11 9 14 14 C 1.47556 * 120.00211 * 180.02562 * 12 11 9 15 15 C 1.39840 * 119.99911 * 359.72616 * 14 12 11 16 16 C 1.36560 * 119.99494 * 179.78527 * 15 14 12 17 17 C 1.39814 * 120.00551 * 0.46889 * 16 15 14 18 18 C 1.47562 * 120.00183 * 179.76253 * 17 16 15 19 19 C 1.34977 * 125.27404 * 359.73678 * 18 17 16 20 20 C 1.37804 * 114.70033 * 179.85718 * 19 18 17 21 21 C 1.33739 * 115.08067 * 0.43829 * 20 19 18 22 22 C 1.50697 * 125.12032 * 179.76571 * 21 20 19 23 23 O 1.42898 * 109.47155 * 300.02676 * 22 21 20 24 24 Si 1.86304 * 109.47162 * 180.02562 * 22 21 20 25 25 S 1.75862 * 109.76269 * 359.76280 * 21 20 19 26 26 C 1.39828 * 119.99970 * 359.78462 * 17 16 15 27 27 C 1.36553 * 120.00158 * 359.97438 * 26 17 16 28 28 C 1.53778 * 87.11184 * 334.63815 * 9 8 6 29 29 H 1.08999 * 109.47426 * 65.50794 * 1 2 3 30 30 H 1.08998 * 109.47096 * 185.51167 * 1 2 3 31 31 H 1.09006 * 109.47169 * 305.50874 * 1 2 3 32 32 H 1.09003 * 109.47583 * 300.00163 * 5 2 1 33 33 H 1.09003 * 109.47643 * 59.99714 * 5 2 1 34 34 H 1.09004 * 113.61452 * 254.53383 * 8 6 5 35 35 H 1.09004 * 113.61550 * 25.42919 * 8 6 5 36 36 H 0.97001 * 119.99992 * 72.60211 * 11 9 8 37 37 H 1.08002 * 119.99932 * 0.02562 * 15 14 12 38 38 H 1.08000 * 119.99598 * 180.22856 * 16 15 14 39 39 H 1.08000 * 122.65032 * 0.02562 * 19 18 17 40 40 H 1.08000 * 122.45747 * 180.18040 * 20 19 18 41 41 H 1.09011 * 109.47140 * 60.02477 * 22 21 20 42 42 H 0.96704 * 113.99815 * 180.02562 * 23 22 21 43 43 H 1.48497 * 110.00118 * 298.68138 * 24 22 21 44 44 H 1.48501 * 109.99755 * 60.00140 * 24 22 21 45 45 H 1.08000 * 119.99734 * 179.97438 * 26 17 16 46 46 H 1.07999 * 119.99882 * 179.97438 * 27 26 17 47 47 H 1.09004 * 113.61300 * 270.81669 * 28 9 8 48 48 H 1.08996 * 113.69037 * 139.92110 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7978 7 1 4.2175 -1.2028 0.9152 8 6 4.3301 0.4674 2.3621 9 6 5.2324 -0.4411 3.2171 10 1 6.1629 -0.7199 2.7226 11 7 5.4381 0.0486 4.5823 12 6 6.6297 0.5671 4.9399 13 8 7.5338 0.6289 4.1291 14 6 6.8372 1.0599 6.3152 15 6 5.7957 0.9941 7.2460 16 6 5.9892 1.4461 8.5200 17 6 7.2254 1.9837 8.8910 18 6 7.4327 2.4769 10.2662 19 6 6.5050 2.4655 11.2466 20 6 6.9343 2.9778 12.4516 21 6 8.1980 3.4154 12.4637 22 6 8.8945 4.0209 13.6550 23 8 8.1913 5.1924 14.0733 24 14 10.6394 4.4774 13.1884 25 16 8.9247 3.1778 10.8799 26 6 8.2652 2.0543 7.9588 27 6 8.0734 1.5978 6.6862 28 6 4.1314 -1.5088 3.1049 29 1 -0.3634 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 -0.3634 0.5969 0.8366 32 1 1.7610 -0.1172 2.4042 33 1 1.7610 -1.7370 1.6664 34 1 4.8745 1.0506 1.6194 35 1 3.6356 1.0692 2.9482 36 1 4.7168 -0.0004 5.2290 37 1 4.8396 0.5823 6.9584 38 1 5.1860 1.3920 9.2400 39 1 5.5060 2.0825 11.0990 40 1 6.2957 3.0264 13.3213 41 1 8.9137 3.2980 14.4708 42 1 8.5847 5.6355 14.8375 43 1 11.3908 3.2627 12.7820 44 1 10.6268 5.4624 12.0772 45 1 9.2199 2.4699 8.2453 46 1 8.8764 1.6528 5.9661 47 1 3.3824 -1.4482 3.8945 48 1 4.5142 -2.5192 2.9612 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:02:49 Heat of formation + Delta-G solvation = -49.139448 kcal Electronic energy + Delta-G solvation = -31782.932448 eV Core-core repulsion = 27217.343340 eV Total energy + Delta-G solvation = -4565.589109 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.094 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.63912 -40.46196 -39.50056 -38.85729 -37.97437 -37.41323 -37.00136 -35.15502 -33.58375 -32.37246 -31.17048 -30.53763 -30.00986 -27.36424 -26.76584 -25.13998 -24.19087 -23.74829 -23.10230 -21.73812 -20.86900 -20.19514 -19.80619 -19.04663 -18.59291 -18.31756 -17.89188 -17.46014 -17.11358 -17.01383 -16.80225 -16.29900 -16.23114 -16.07815 -15.98437 -15.64481 -15.49595 -15.03329 -14.76018 -14.64158 -14.52175 -14.35167 -14.16273 -14.04355 -13.90806 -13.60970 -13.50107 -13.45677 -13.28657 -13.22738 -13.15315 -13.06739 -13.00553 -12.70057 -12.62925 -12.38952 -12.18363 -12.04815 -11.94892 -11.84411 -11.52587 -11.19561 -11.01642 -10.88369 -10.36924 -10.27380 -10.15386 -9.73555 -9.11648 -5.27549 -0.98399 -0.90792 0.14927 0.25553 0.31362 0.67390 1.16014 1.45105 1.54281 1.86826 1.88187 1.91481 2.01275 2.74264 2.76915 3.11407 3.30216 3.34601 3.39489 3.43371 3.59493 3.62895 3.67050 3.74902 3.75616 3.81916 4.04731 4.09553 4.11587 4.16853 4.23625 4.32722 4.33507 4.42791 4.47185 4.52246 4.55738 4.70810 4.72601 4.80723 4.83603 4.92052 4.94155 4.98324 5.01610 5.02550 5.13768 5.14696 5.20184 5.23914 5.40192 5.48568 5.65257 6.42017 6.83511 7.08450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.402 3.598 3 O -0.989 6.989 4 O -0.996 6.996 5 C -0.578 4.578 6 C -0.111 4.111 7 H 0.096 0.904 8 C -0.160 4.160 9 C 0.109 3.891 10 H 0.092 0.908 11 N -0.696 5.696 12 C 0.556 3.444 13 O -0.584 6.584 14 C -0.149 4.149 15 C -0.063 4.063 16 C -0.104 4.104 17 C 0.004 3.996 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.103 4.103 21 C -0.186 4.186 22 C -0.034 4.034 23 O -0.559 6.559 24 Si 0.747 3.253 25 S 0.052 5.948 26 C -0.134 4.134 27 C -0.066 4.066 28 C -0.109 4.109 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.419 0.581 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.113 0.887 42 H 0.407 0.593 43 H -0.274 1.274 44 H -0.287 1.287 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -3.201 11.530 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.591 3.409 3 O -0.986 6.986 4 O -0.993 6.993 5 C -0.709 4.709 6 C -0.131 4.131 7 H 0.114 0.886 8 C -0.198 4.198 9 C 0.004 3.996 10 H 0.111 0.889 11 N -0.348 5.348 12 C 0.345 3.655 13 O -0.465 6.465 14 C -0.152 4.152 15 C -0.081 4.081 16 C -0.124 4.124 17 C 0.002 3.998 18 C -0.269 4.269 19 C -0.142 4.142 20 C -0.133 4.133 21 C -0.303 4.303 22 C -0.147 4.147 23 O -0.370 6.370 24 Si 0.652 3.348 25 S 0.319 5.681 26 C -0.152 4.152 27 C -0.085 4.085 28 C -0.148 4.148 29 H 0.144 0.856 30 H 0.173 0.827 31 H 0.173 0.827 32 H 0.188 0.812 33 H 0.190 0.810 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.258 0.742 37 H 0.189 0.811 38 H 0.185 0.815 39 H 0.196 0.804 40 H 0.184 0.816 41 H 0.130 0.870 42 H 0.259 0.741 43 H -0.200 1.200 44 H -0.214 1.214 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.144 0.856 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.125 -2.685 8.544 10.850 hybrid contribution -1.656 -0.408 0.640 1.821 sum -7.781 -3.092 9.184 12.427 Atomic orbital electron populations 1.30129 1.22369 1.13882 1.13058 1.07929 0.79854 0.74509 0.78584 1.93559 1.80784 1.36758 1.87510 1.93550 1.81014 1.67710 1.57040 1.30128 1.03167 1.16482 1.21167 1.22091 0.92443 0.98416 1.00161 0.88620 1.23807 0.99544 0.96875 0.99601 1.22592 0.98646 0.96234 0.82118 0.88940 1.45710 1.13730 1.61636 1.13690 1.18530 0.82660 0.76929 0.87426 1.90789 1.43966 1.57796 1.53977 1.20043 0.96251 1.05139 0.93813 1.21322 0.98615 0.96211 0.91947 1.21234 0.96155 0.97706 0.97276 1.18482 0.94973 0.96766 0.89584 1.23178 0.97074 1.09112 0.97533 1.20751 1.01357 1.00904 0.91146 1.20305 0.94576 0.98499 0.99871 1.24095 0.99517 1.09304 0.97400 1.24000 1.04486 0.90763 0.95494 1.86452 1.55917 1.40183 1.54408 0.94153 0.75671 0.80030 0.84982 1.84508 1.16839 1.60929 1.05864 1.20964 0.99134 1.01793 0.93346 1.20909 0.96921 0.94757 0.95869 1.23345 0.96847 0.98114 0.96520 0.85557 0.82749 0.82670 0.81218 0.80963 0.92636 0.86990 0.74152 0.81080 0.81504 0.80391 0.81586 0.86999 0.74122 1.20008 1.21397 0.85968 0.85679 0.85597 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.18 10.62 113.37 1.20 8.38 16 2 S 2.40 -6.94 5.36 -56.49 -0.30 -7.24 16 3 O -0.99 -6.77 18.10 -127.37 -2.31 -9.07 16 4 O -1.00 -7.26 18.10 -127.37 -2.30 -9.56 16 5 C -0.58 6.69 5.63 71.98 0.41 7.09 16 6 C -0.11 0.55 3.64 -10.27 -0.04 0.51 16 7 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 8 C -0.16 0.13 7.45 31.18 0.23 0.36 16 9 C 0.11 -0.08 4.24 45.58 0.19 0.11 16 10 H 0.09 0.48 7.46 -2.39 -0.02 0.47 16 11 N -0.70 1.37 5.31 -442.90 -2.35 -0.98 16 12 C 0.56 3.67 7.76 86.70 0.67 4.34 16 13 O -0.58 -9.66 15.93 -4.01 -0.06 -9.73 16 14 C -0.15 -0.53 5.88 -20.05 -0.12 -0.65 16 15 C -0.06 0.26 9.48 22.27 0.21 0.47 16 16 C -0.10 0.33 9.48 22.26 0.21 0.54 16 17 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 18 C -0.15 -0.59 6.37 23.98 0.15 -0.43 16 19 C -0.11 0.01 9.64 21.42 0.21 0.22 16 20 C -0.10 -0.11 10.00 21.14 0.21 0.10 16 21 C -0.19 -0.70 5.76 24.66 0.14 -0.56 16 22 C -0.03 0.06 2.95 71.23 0.21 0.27 16 23 O -0.56 1.08 12.83 -148.98 -1.91 -0.84 16 24 Si 0.75 -0.80 30.96 68.60 2.12 1.32 16 25 S 0.05 0.36 19.46 -56.49 -1.10 -0.74 16 26 C -0.13 -0.78 9.54 22.26 0.21 -0.56 16 27 C -0.07 -0.46 9.53 22.26 0.21 -0.25 16 28 C -0.11 0.92 7.40 31.12 0.23 1.15 16 29 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 30 H 0.15 -2.46 8.14 -2.39 -0.02 -2.48 16 31 H 0.15 -2.51 8.14 -2.39 -0.02 -2.53 16 32 H 0.17 -3.10 7.88 -2.39 -0.02 -3.11 16 33 H 0.17 -3.10 8.14 -2.39 -0.02 -3.12 16 34 H 0.05 0.29 8.14 -2.38 -0.02 0.27 16 35 H 0.11 -0.55 7.92 -2.39 -0.02 -0.57 16 36 H 0.42 -4.33 6.74 -92.71 -0.62 -4.95 16 37 H 0.17 -2.23 6.38 -2.91 -0.02 -2.25 16 38 H 0.17 -1.64 6.74 -2.91 -0.02 -1.66 16 39 H 0.18 -1.27 6.88 -2.91 -0.02 -1.29 16 40 H 0.17 -0.49 8.06 -2.91 -0.02 -0.51 16 41 H 0.11 -0.76 7.96 -2.38 -0.02 -0.78 16 42 H 0.41 -5.13 8.74 -74.05 -0.65 -5.78 16 43 H -0.27 -1.23 7.11 99.48 0.71 -0.52 16 44 H -0.29 -2.10 7.11 99.48 0.71 -1.40 16 45 H 0.12 0.71 7.26 -2.91 -0.02 0.69 16 46 H 0.13 1.14 7.64 -2.91 -0.02 1.12 16 47 H 0.13 -1.86 8.08 -2.38 -0.02 -1.88 16 48 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: 0.00 -44.29 426.23 -3.99 -48.29 By element: Atomic # 1 Polarization: -32.22 SS G_CDS: -0.21 Total: -32.43 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 4.43 Total: 20.98 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -2.35 Total: -0.98 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -6.59 Total: -29.20 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: 2.12 Total: 1.32 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.40 Total: -7.98 kcal Total: -44.29 -3.99 -48.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.851 kcal (2) G-P(sol) polarization free energy of solvation -44.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds