Wall clock time and date at job start Sun Mar 7 2021 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37871 * 126.45813 * 2 1 4 4 C 1.46683 * 126.23314 * 359.97438 * 3 2 1 5 5 O 1.21696 * 119.99692 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99715 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99525 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.91148 * 23.75262 * 7 6 4 9 9 C 1.53786 * 113.61370 * 155.00031 * 7 6 4 10 10 C 1.53781 * 87.17350 * 140.02367 * 9 7 6 11 11 H 1.08999 * 113.61567 * 89.07405 * 10 9 7 12 12 C 1.52991 * 113.61529 * 219.97788 * 10 9 7 13 13 S 1.81402 * 109.47238 * 184.99823 * 12 10 9 14 14 C 1.81407 * 101.92159 * 179.97438 * 13 12 10 15 15 O 1.42090 * 108.58085 * 294.48796 * 13 12 10 16 16 O 1.42106 * 108.57713 * 65.51675 * 13 12 10 17 17 C 1.53781 * 87.08070 * 334.52830 * 10 9 7 18 18 N 1.37649 * 107.53195 * 180.25846 * 3 2 1 19 19 C 1.35529 * 108.64892 * 359.62103 * 18 3 2 20 20 C 1.50695 * 125.57090 * 180.18265 * 19 18 3 21 21 O 1.42897 * 109.46837 * 65.25299 * 20 19 18 22 22 Si 1.86299 * 109.47526 * 185.25289 * 20 19 18 23 23 C 1.35455 * 108.86984 * 0.38281 * 19 18 3 24 24 H 1.09007 * 109.46427 * 90.00266 * 1 2 3 25 25 H 1.08992 * 109.47274 * 210.00220 * 1 2 3 26 26 H 1.09000 * 109.46876 * 330.00917 * 1 2 3 27 27 H 0.97000 * 119.99938 * 359.97438 * 6 4 3 28 28 H 1.09002 * 113.61357 * 25.43283 * 9 7 6 29 29 H 1.09002 * 113.61608 * 254.61445 * 9 7 6 30 30 H 1.08997 * 109.47550 * 304.99814 * 12 10 9 31 31 H 1.09002 * 109.47334 * 65.00084 * 12 10 9 32 32 H 1.09008 * 109.46589 * 60.00638 * 14 13 12 33 33 H 1.08996 * 109.47107 * 179.97438 * 14 13 12 34 34 H 1.08995 * 109.47335 * 300.00400 * 14 13 12 35 35 H 1.09005 * 113.61471 * 139.98321 * 17 10 9 36 36 H 1.08996 * 113.61178 * 270.79663 * 17 10 9 37 37 H 0.97001 * 125.67594 * 179.73911 * 18 3 2 38 38 H 1.09000 * 109.47057 * 305.25506 * 20 19 18 39 39 H 0.96700 * 114.00423 * 60.00040 * 21 20 19 40 40 H 1.48498 * 109.99560 * 58.68359 * 22 20 19 41 41 H 1.48503 * 110.00035 * 180.02562 * 22 20 19 42 42 H 1.08000 * 126.07236 * 179.74864 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5093 -0.0005 5 8 0.7027 2.7766 -0.0006 6 7 2.8038 3.4999 -0.0010 7 6 2.3679 4.8985 -0.0021 8 1 1.3642 5.0304 0.4020 9 6 3.4037 5.8670 0.5930 10 6 3.0222 6.8450 -0.5307 11 1 2.1970 7.5081 -0.2710 12 6 4.2183 7.5886 -1.1283 13 16 3.6300 8.8117 -2.3319 14 6 5.1838 9.5568 -2.8989 15 8 3.0331 8.1233 -3.4222 16 8 2.8795 9.8015 -1.6416 17 6 2.5907 5.6154 -1.3473 18 7 3.6284 0.6624 -0.0059 19 6 3.6218 -0.6928 -0.0010 20 6 4.8434 -1.5753 -0.0010 21 8 5.5628 -1.3927 1.2200 22 14 4.3222 -3.3574 -0.1541 23 6 2.3380 -1.1248 -0.0006 24 1 -0.3632 0.0000 -1.0278 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 3.7501 3.2867 -0.0006 28 1 4.4294 5.5042 0.5266 29 1 3.1450 6.2247 1.5896 30 1 4.7653 8.0953 -0.3333 31 1 4.8769 6.8768 -1.6260 32 1 5.8143 8.7873 -3.3445 33 1 4.9686 10.3248 -3.6418 34 1 5.7021 10.0056 -2.0515 35 1 1.6744 5.7693 -1.9172 36 1 3.3938 5.1847 -1.9453 37 1 4.4191 1.2243 -0.0109 38 1 5.4831 -1.3103 -0.8428 39 1 5.0538 -1.6101 2.0129 40 1 3.5456 -3.5537 -1.4045 41 1 5.5179 -4.2380 -0.1546 42 1 2.0136 -2.1549 -0.0011 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:03:22 Heat of formation + Delta-G solvation = -76.188861 kcal Electronic energy + Delta-G solvation = -25807.211520 eV Core-core repulsion = 21882.539625 eV Total energy + Delta-G solvation = -3924.671895 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.61804 -41.00119 -39.37743 -37.99078 -37.67926 -37.01953 -35.16142 -33.48699 -31.86156 -30.90736 -30.10152 -28.21287 -27.00916 -26.78945 -24.27003 -22.32045 -21.55052 -21.23339 -20.23819 -19.80858 -19.45398 -18.04549 -17.89526 -17.43349 -17.02968 -16.82199 -16.63834 -16.29960 -16.19494 -15.88990 -15.36967 -15.15540 -14.91757 -14.44002 -14.36430 -14.08475 -13.96250 -13.92927 -13.65982 -13.61752 -13.54233 -13.50812 -13.23413 -13.08049 -13.02134 -12.97526 -12.66199 -12.21089 -12.06379 -11.99085 -11.96634 -11.53750 -11.18971 -11.02692 -10.65077 -10.23421 -9.82818 -9.20875 -4.91053 -0.92538 0.28205 1.23316 1.51785 1.72656 1.89520 1.91363 2.01342 2.21898 2.22261 2.75213 3.09401 3.32137 3.40176 3.47652 3.57306 3.60005 3.68280 3.80108 4.02789 4.07680 4.12925 4.15255 4.22000 4.31008 4.42197 4.50882 4.65794 4.69550 4.71461 4.76647 4.81201 4.88672 4.90704 4.96327 4.99331 5.10423 5.16224 5.34177 5.45120 5.62853 5.84317 6.30301 6.47200 6.68256 7.05457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.087 4.087 3 C -0.071 4.071 4 C 0.586 3.414 5 O -0.564 6.564 6 N -0.706 5.706 7 C 0.113 3.887 8 H 0.098 0.902 9 C -0.112 4.112 10 C -0.110 4.110 11 H 0.098 0.902 12 C -0.580 4.580 13 S 2.407 3.593 14 C -0.643 4.643 15 O -0.989 6.989 16 O -0.994 6.994 17 C -0.158 4.158 18 N -0.512 5.512 19 C 0.034 3.966 20 C -0.052 4.052 21 O -0.553 6.553 22 Si 0.801 3.199 23 C -0.207 4.207 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.410 0.590 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.428 0.572 38 H 0.117 0.883 39 H 0.399 0.601 40 H -0.288 1.288 41 H -0.294 1.294 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 -2.141 3.711 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.184 4.184 4 C 0.375 3.625 5 O -0.443 6.443 6 N -0.357 5.357 7 C 0.008 3.992 8 H 0.116 0.884 9 C -0.151 4.151 10 C -0.130 4.130 11 H 0.116 0.884 12 C -0.711 4.711 13 S 2.596 3.404 14 C -0.795 4.795 15 O -0.986 6.986 16 O -0.991 6.991 17 C -0.197 4.197 18 N -0.110 5.110 19 C -0.085 4.085 20 C -0.162 4.162 21 O -0.361 6.361 22 Si 0.705 3.295 23 C -0.231 4.231 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.247 0.753 28 H 0.138 0.862 29 H 0.108 0.892 30 H 0.189 0.811 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.145 0.855 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.268 0.732 38 H 0.135 0.865 39 H 0.250 0.750 40 H -0.215 1.215 41 H -0.222 1.222 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.254 -2.098 2.562 8.894 hybrid contribution 1.292 0.839 -0.402 1.592 sum 9.546 -1.260 2.160 9.868 Atomic orbital electron populations 1.20341 0.89315 1.03057 1.02114 1.20185 0.96279 0.91436 1.01661 1.20128 0.84579 0.93040 1.20667 1.17301 0.85719 0.83887 0.75626 1.90824 1.17769 1.83806 1.51915 1.45703 1.09549 1.05523 1.74893 1.22593 1.00219 0.78865 0.97487 0.88370 1.23341 1.00154 0.93188 0.98381 1.22080 0.96780 0.95659 0.98457 0.88364 1.30134 1.08036 1.16092 1.16831 1.07798 0.79111 0.76906 0.76537 1.30134 1.20479 1.14717 1.14169 1.93555 1.75997 1.75015 1.54009 1.93553 1.70059 1.60131 1.75406 1.23801 1.02875 0.95954 0.97088 1.41790 1.06711 1.06745 1.55742 1.21305 0.97061 0.83376 1.06723 1.24998 0.91572 1.09009 0.90601 1.86472 1.42599 1.91193 1.15840 0.92974 0.79577 0.71187 0.85754 1.20846 0.90824 0.99517 1.11940 0.91871 0.89813 0.92100 0.75286 0.86196 0.89229 0.81078 0.81591 0.82847 0.85482 0.82800 0.92356 0.87493 0.73238 0.86532 0.75030 1.21486 1.22151 0.81427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 9.83 71.24 0.70 0.23 16 2 C -0.09 -0.41 6.21 -19.56 -0.12 -0.53 16 3 C -0.07 -0.25 7.06 40.35 0.28 0.03 16 4 C 0.59 3.59 7.79 86.45 0.67 4.26 16 5 O -0.56 -8.15 14.40 -4.34 -0.06 -8.21 16 6 N -0.71 1.25 5.36 -443.56 -2.38 -1.12 16 7 C 0.11 -0.12 4.25 45.61 0.19 0.08 16 8 H 0.10 0.41 7.46 -2.39 -0.02 0.40 16 9 C -0.11 0.90 7.39 31.12 0.23 1.13 16 10 C -0.11 0.54 3.66 -10.27 -0.04 0.50 16 11 H 0.10 -0.22 8.13 -2.39 -0.02 -0.24 16 12 C -0.58 6.54 5.64 71.98 0.41 6.94 16 13 S 2.41 -7.46 5.35 -56.49 -0.30 -7.76 16 14 C -0.64 7.13 10.62 113.37 1.20 8.33 16 15 O -0.99 -6.56 18.10 -127.37 -2.30 -8.86 16 16 O -0.99 -6.88 18.10 -127.37 -2.30 -9.19 16 17 C -0.16 0.16 7.44 31.21 0.23 0.39 16 18 N -0.51 1.45 5.99 -171.93 -1.03 0.42 16 19 C 0.03 -0.09 6.46 41.34 0.27 0.18 16 20 C -0.05 0.27 3.08 71.23 0.22 0.49 16 21 O -0.55 2.93 12.88 -148.98 -1.92 1.01 16 22 Si 0.80 -4.33 30.56 68.60 2.10 -2.23 16 23 C -0.21 0.06 9.27 22.01 0.20 0.26 16 24 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.08 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.06 0.58 6.48 -2.39 -0.02 0.56 16 27 H 0.41 -3.65 7.86 -92.71 -0.73 -4.38 16 28 H 0.12 -1.63 8.08 -2.39 -0.02 -1.65 16 29 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.17 -3.01 8.14 -2.39 -0.02 -3.03 16 31 H 0.17 -2.89 7.84 -2.39 -0.02 -2.91 16 32 H 0.15 -2.42 8.14 -2.39 -0.02 -2.44 16 33 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 34 H 0.15 -2.43 8.14 -2.39 -0.02 -2.44 16 35 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 36 H 0.11 -0.48 7.89 -2.39 -0.02 -0.50 16 37 H 0.43 -3.66 8.19 -92.71 -0.76 -4.42 16 38 H 0.12 -0.64 7.96 -2.39 -0.02 -0.66 16 39 H 0.40 -4.89 8.70 -74.06 -0.64 -5.53 16 40 H -0.29 -0.20 7.11 99.48 0.71 0.51 16 41 H -0.29 -0.45 7.11 99.48 0.71 0.25 16 42 H 0.17 -0.81 6.19 -2.91 -0.02 -0.82 16 Total: 0.00 -37.49 363.56 -4.77 -42.26 By element: Atomic # 1 Polarization: -27.60 SS G_CDS: -1.02 Total: -28.62 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 4.46 Total: 22.30 kcal Atomic # 7 Polarization: 2.70 SS G_CDS: -3.41 Total: -0.71 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -6.59 Total: -25.24 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: 2.10 Total: -2.23 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -0.30 Total: -7.76 kcal Total: -37.49 -4.77 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.929 kcal (2) G-P(sol) polarization free energy of solvation -37.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds